Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00261 * 2 1 4 4 C 1.52996 * 109.47135 * 124.99977 * 3 2 1 5 5 H 1.08998 * 110.64501 * 303.29838 * 4 3 2 6 6 C 1.54593 * 110.72480 * 66.45736 * 4 3 2 7 7 C 1.53998 * 105.14036 * 140.49233 * 6 4 3 8 8 N 1.47898 * 107.05928 * 1.22245 * 7 6 4 9 9 C 1.46898 * 111.00293 * 214.16011 * 8 7 6 10 10 C 1.52993 * 109.47463 * 175.70980 * 9 8 7 11 11 C 1.52998 * 109.47251 * 174.85328 * 10 9 8 12 12 S 1.81001 * 109.47164 * 180.02562 * 11 10 9 13 13 C 1.76201 * 100.00190 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99788 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99970 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47213 * 90.00092 * 17 15 13 19 19 H 1.48503 * 109.46975 * 210.00017 * 17 15 13 20 20 H 1.48495 * 109.47261 * 330.00018 * 17 15 13 21 21 C 1.48540 * 105.81777 * 334.67020 * 8 7 6 22 22 H 1.07998 * 119.99851 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.00033 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.00033 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.46728 * 4.99762 * 3 2 1 26 26 H 1.09000 * 109.46787 * 245.00448 * 3 2 1 27 27 H 1.09005 * 110.31061 * 21.57733 * 6 4 3 28 28 H 1.08998 * 110.30873 * 259.40953 * 6 4 3 29 29 H 1.09000 * 109.91194 * 241.87130 * 7 6 4 30 30 H 1.09003 * 109.91575 * 120.58178 * 7 6 4 31 31 H 1.09000 * 109.47323 * 55.70319 * 9 8 7 32 32 H 1.09009 * 109.46577 * 295.70952 * 9 8 7 33 33 H 1.09002 * 109.47032 * 54.85848 * 10 9 8 34 34 H 1.08998 * 109.47419 * 294.86129 * 10 9 8 35 35 H 1.08999 * 109.47281 * 299.99984 * 11 10 9 36 36 H 1.08997 * 109.46966 * 60.00652 * 11 10 9 37 37 H 0.96999 * 120.00270 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.66025 * 157.64211 * 21 8 7 39 39 H 1.08996 * 110.66743 * 280.76626 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.5030 1.1785 2.1203 6 6 4.1461 0.2733 1.0015 7 6 5.4351 0.9534 1.4989 8 7 5.0606 2.3076 1.9610 9 6 6.1361 3.2716 1.6926 10 6 5.6721 4.6757 2.0850 11 6 6.8332 5.6593 1.9268 12 16 6.2844 7.3203 2.3917 13 6 7.7742 8.2216 2.1216 14 1 8.6582 7.7106 1.7700 15 6 7.8118 9.5882 2.3618 16 7 8.9249 10.2613 2.1604 17 14 6.2829 10.4719 2.9707 18 1 6.2643 10.4629 4.4556 19 1 6.2955 11.8750 2.4843 20 1 5.0736 9.7805 2.4563 21 6 3.8276 2.6640 1.2133 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1315 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 4.2431 0.0016 -0.0497 28 1 3.9280 -0.6094 1.6026 29 1 6.1553 1.0252 0.6838 30 1 5.8607 0.3836 2.3249 31 1 6.3834 3.2540 0.6312 32 1 7.0175 3.0040 2.2755 33 1 5.3386 4.6713 3.1228 34 1 4.8478 4.9795 1.4398 35 1 7.6574 5.3555 2.5721 36 1 7.1667 5.6638 0.8891 37 1 8.9513 11.2162 2.3286 38 1 3.2659 3.4337 1.7425 39 1 4.0716 2.9907 0.2024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599526874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = -2.728399 kcal Electronic energy + Delta-G solvation = -16199.864140 eV Core-core repulsion = 13654.021160 eV Total energy + Delta-G solvation = -2545.842980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42926 -35.88307 -33.79125 -32.42606 -30.98191 -29.36898 -26.50329 -25.70641 -24.57374 -21.72501 -21.15080 -20.26661 -19.52708 -17.44853 -16.45572 -15.92317 -15.39782 -14.96316 -14.76047 -14.23993 -13.91136 -13.81093 -13.26087 -13.19873 -12.86789 -12.63040 -12.19983 -11.90184 -11.79904 -11.60329 -11.37253 -11.04865 -11.00173 -10.94375 -10.85302 -10.66878 -10.41244 -10.10462 -9.75341 -9.60469 -8.99244 -8.54566 -8.45327 -6.92601 -6.27144 -3.99169 1.99590 3.02089 3.31460 3.46622 3.57562 3.96994 4.32245 4.33053 4.48859 4.72441 4.82251 4.83540 4.88939 5.11586 5.13025 5.19684 5.25065 5.28823 5.42313 5.54097 5.55392 5.60888 5.62309 5.67178 5.71331 5.79509 5.87017 5.94365 6.06002 6.09977 6.23994 6.34145 6.48746 6.49804 6.65229 6.85829 7.03874 7.96725 8.45638 9.18844 10.82416 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.003419 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.327983 B = 8186.635476 C = 8755.927338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.087 4.087 4 C -0.087 4.087 5 H 0.083 0.917 6 C -0.125 4.125 7 C 0.034 3.966 8 N -0.517 5.517 9 C 0.052 3.948 10 C -0.098 4.098 11 C -0.081 4.081 12 S -0.216 6.216 13 C -0.502 4.502 14 H 0.088 0.912 15 C 0.091 3.909 16 N -0.883 5.883 17 Si 0.862 3.138 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.238 1.238 21 C 0.038 3.962 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 -20.654 -3.758 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.167 4.167 3 C -0.125 4.125 4 C -0.106 4.106 5 H 0.102 0.898 6 C -0.163 4.163 7 C -0.094 4.094 8 N -0.241 5.241 9 C -0.078 4.078 10 C -0.137 4.137 11 C -0.230 4.230 12 S 0.012 5.988 13 C -0.649 4.649 14 H 0.106 0.894 15 C -0.117 4.117 16 N -0.520 5.520 17 Si 0.687 3.313 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.162 1.162 21 C -0.090 4.090 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.125 0.875 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.008 -20.084 -2.826 24.649 hybrid contribution 1.038 0.189 -1.047 1.486 sum -12.970 -19.896 -3.873 24.064 Atomic orbital electron populations 1.23861 0.96009 1.01792 1.01864 1.22951 0.95928 0.98529 0.99263 1.20787 0.98054 0.95486 0.98169 1.22054 0.95117 0.94741 0.98677 0.89828 1.22480 0.94341 0.98421 1.01082 1.22865 0.96848 0.90732 0.98958 1.64787 1.04314 1.01628 1.53359 1.22348 0.94202 0.92268 0.98975 1.21344 0.97680 0.91775 1.02910 1.23012 1.00007 0.96828 1.03201 1.84146 1.23093 1.02745 1.88830 1.22130 0.95465 0.95636 1.51682 0.89441 1.24802 0.96470 0.96455 0.93988 1.69937 1.26190 1.08717 1.47110 0.86660 0.84529 0.79859 0.80237 1.19348 1.20140 1.16178 1.23313 0.91585 0.97174 0.96949 0.88690 0.88575 0.87504 0.91134 0.90963 0.91505 0.91193 0.93848 0.90487 0.94753 0.90549 0.90610 0.91688 0.91373 0.91629 0.91993 0.89700 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 14.32 29.01 0.42 -0.99 16 2 C -0.15 -1.11 9.15 -36.03 -0.33 -1.44 16 3 C -0.09 -0.69 5.07 -27.89 -0.14 -0.83 16 4 C -0.09 -0.78 3.07 -88.76 -0.27 -1.05 16 5 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.13 -1.05 5.92 -25.37 -0.15 -1.20 16 7 C 0.03 0.34 6.70 -2.75 -0.02 0.33 16 8 N -0.52 -6.33 5.35 -230.45 -1.23 -7.56 16 9 C 0.05 0.69 4.84 -3.83 -0.02 0.67 16 10 C -0.10 -1.56 4.90 -26.74 -0.13 -1.69 16 11 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 12 S -0.22 -5.35 19.41 -107.50 -2.09 -7.43 16 13 C -0.50 -14.74 10.04 30.94 0.31 -14.43 16 14 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 15 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 16 N -0.88 -27.03 13.97 55.49 0.78 -26.25 16 17 Si 0.86 21.77 27.74 -169.99 -4.71 17.05 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 21 C 0.04 0.41 4.81 -1.89 -0.01 0.40 16 22 H 0.09 0.58 8.06 -52.49 -0.42 0.15 16 23 H 0.10 0.66 7.84 -52.48 -0.41 0.24 16 24 H 0.11 0.72 7.87 -52.48 -0.41 0.31 16 25 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 26 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 27 H 0.07 0.51 7.80 -51.93 -0.41 0.11 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.43 7.67 -51.93 -0.40 0.04 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 32 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.02 7.18 -51.93 -0.37 0.65 16 35 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 36 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 37 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.08 0.98 7.77 -51.93 -0.40 0.58 16 39 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -30.66 326.71 -9.58 -40.24 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.01 Total: -1.93 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.23 Total: -19.04 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.46 Total: -33.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.09 Total: -7.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.66 -9.58 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.513 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds