Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00261 * 2 1 4 4 C 1.52996 * 109.47135 * 124.99977 * 3 2 1 5 5 H 1.08998 * 110.64501 * 303.29838 * 4 3 2 6 6 C 1.54593 * 110.72480 * 66.45736 * 4 3 2 7 7 C 1.53998 * 105.14036 * 140.49233 * 6 4 3 8 8 N 1.47898 * 107.05928 * 1.22245 * 7 6 4 9 9 C 1.46898 * 111.00293 * 214.16011 * 8 7 6 10 10 C 1.52993 * 109.47463 * 175.70980 * 9 8 7 11 11 C 1.52998 * 109.47251 * 174.85328 * 10 9 8 12 12 S 1.81001 * 109.47164 * 180.02562 * 11 10 9 13 13 C 1.76201 * 100.00190 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99788 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99970 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47213 * 90.00092 * 17 15 13 19 19 H 1.48503 * 109.46975 * 210.00017 * 17 15 13 20 20 H 1.48495 * 109.47261 * 330.00018 * 17 15 13 21 21 C 1.48540 * 105.81777 * 334.67020 * 8 7 6 22 22 H 1.07998 * 119.99851 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.00033 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.00033 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.46728 * 4.99762 * 3 2 1 26 26 H 1.09000 * 109.46787 * 245.00448 * 3 2 1 27 27 H 1.09005 * 110.31061 * 21.57733 * 6 4 3 28 28 H 1.08998 * 110.30873 * 259.40953 * 6 4 3 29 29 H 1.09000 * 109.91194 * 241.87130 * 7 6 4 30 30 H 1.09003 * 109.91575 * 120.58178 * 7 6 4 31 31 H 1.09000 * 109.47323 * 55.70319 * 9 8 7 32 32 H 1.09009 * 109.46577 * 295.70952 * 9 8 7 33 33 H 1.09002 * 109.47032 * 54.85848 * 10 9 8 34 34 H 1.08998 * 109.47419 * 294.86129 * 10 9 8 35 35 H 1.08999 * 109.47281 * 299.99984 * 11 10 9 36 36 H 1.08997 * 109.46966 * 60.00652 * 11 10 9 37 37 H 0.96999 * 120.00270 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.66025 * 157.64211 * 21 8 7 39 39 H 1.08996 * 110.66743 * 280.76626 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.5030 1.1785 2.1203 6 6 4.1461 0.2733 1.0015 7 6 5.4351 0.9534 1.4989 8 7 5.0606 2.3076 1.9610 9 6 6.1361 3.2716 1.6926 10 6 5.6721 4.6757 2.0850 11 6 6.8332 5.6593 1.9268 12 16 6.2844 7.3203 2.3917 13 6 7.7742 8.2216 2.1216 14 1 8.6582 7.7106 1.7700 15 6 7.8118 9.5882 2.3618 16 7 8.9249 10.2613 2.1604 17 14 6.2829 10.4719 2.9707 18 1 6.2643 10.4629 4.4556 19 1 6.2955 11.8750 2.4843 20 1 5.0736 9.7805 2.4563 21 6 3.8276 2.6640 1.2133 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1315 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 4.2431 0.0016 -0.0497 28 1 3.9280 -0.6094 1.6026 29 1 6.1553 1.0252 0.6838 30 1 5.8607 0.3836 2.3249 31 1 6.3834 3.2540 0.6312 32 1 7.0175 3.0040 2.2755 33 1 5.3386 4.6713 3.1228 34 1 4.8478 4.9795 1.4398 35 1 7.6574 5.3555 2.5721 36 1 7.1667 5.6638 0.8891 37 1 8.9513 11.2162 2.3286 38 1 3.2659 3.4337 1.7425 39 1 4.0716 2.9907 0.2024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599526874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = -20.792356 kcal Electronic energy + Delta-G solvation = -16200.647452 eV Core-core repulsion = 13654.021160 eV Total energy + Delta-G solvation = -2546.626292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26793 -36.70351 -34.81429 -34.68843 -31.90781 -30.19140 -28.01662 -27.33572 -25.66314 -22.81453 -21.93922 -21.22062 -20.14458 -19.60189 -17.22982 -17.13081 -16.89988 -16.51886 -15.91595 -15.46451 -14.97366 -14.92750 -14.51649 -14.30825 -14.16177 -13.60071 -13.45773 -13.18271 -13.11663 -12.97791 -12.70264 -12.46176 -12.29869 -11.99044 -11.74014 -11.62546 -11.55400 -11.52699 -11.34920 -11.17217 -10.57925 -10.16327 -9.38383 -9.00567 -8.52916 -6.24458 1.11573 1.31801 1.45304 1.47305 1.73056 2.24285 2.67246 2.85070 3.02941 3.61649 3.71892 3.95447 3.99929 4.17406 4.21573 4.29743 4.34140 4.38593 4.43974 4.56553 4.64923 4.67503 4.74875 4.79983 4.84528 4.95524 5.01386 5.08524 5.10030 5.18358 5.23774 5.28185 5.41060 5.68794 5.80034 5.93771 5.97857 6.06957 6.08988 6.91065 8.60287 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.003419 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.327983 B = 8186.635476 C = 8755.927338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.084 4.084 4 C -0.079 4.079 5 H 0.078 0.922 6 C -0.119 4.119 7 C 0.031 3.969 8 N -0.529 5.529 9 C 0.060 3.940 10 C -0.084 4.084 11 C -0.069 4.069 12 S -0.220 6.220 13 C -0.523 4.523 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.923 5.923 17 Si 0.927 3.073 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.229 1.229 21 C 0.034 3.966 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.116 0.884 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.277 0.723 38 H 0.076 0.924 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 -21.958 -3.753 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.174 4.174 3 C -0.121 4.121 4 C -0.099 4.099 5 H 0.097 0.903 6 C -0.157 4.157 7 C -0.097 4.097 8 N -0.253 5.253 9 C -0.070 4.070 10 C -0.123 4.123 11 C -0.218 4.218 12 S 0.008 5.992 13 C -0.670 4.670 14 H 0.068 0.932 15 C -0.168 4.168 16 N -0.561 5.561 17 Si 0.748 3.252 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.152 1.152 21 C -0.094 4.094 22 H 0.124 0.876 23 H 0.114 0.886 24 H 0.134 0.866 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.869 -21.403 -2.827 26.793 hybrid contribution 1.677 0.492 -1.077 2.053 sum -14.192 -20.910 -3.904 25.572 Atomic orbital electron populations 1.24015 0.96099 1.02370 1.01268 1.23001 0.96095 0.98525 0.99770 1.20738 0.97812 0.95872 0.97687 1.21976 0.95225 0.93720 0.98931 0.90342 1.22465 0.92995 0.98355 1.01888 1.22944 0.97852 0.89622 0.99242 1.64763 1.04210 1.02284 1.54057 1.22177 0.94650 0.90989 0.99136 1.21213 0.96031 0.92281 1.02812 1.23071 1.01474 0.94379 1.02867 1.83841 1.20746 1.05508 1.89106 1.22342 0.96505 0.96552 1.51640 0.93173 1.25798 0.99792 0.97228 0.93957 1.70035 1.28476 1.09468 1.48089 0.85697 0.80535 0.79077 0.79933 1.18584 1.18650 1.15232 1.23348 0.91366 0.98161 0.96501 0.87648 0.88594 0.86643 0.91371 0.90818 0.90485 0.90044 0.93649 0.90106 0.94355 0.90461 0.91015 0.91350 0.91604 0.91705 0.91365 0.90573 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.47 14.32 67.78 0.97 -1.50 16 2 C -0.16 -2.00 9.15 25.65 0.23 -1.76 16 3 C -0.08 -1.17 5.07 29.85 0.15 -1.02 16 4 C -0.08 -1.28 3.07 -9.59 -0.03 -1.31 16 5 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.12 -1.71 5.92 31.47 0.19 -1.52 16 7 C 0.03 0.56 6.70 86.45 0.58 1.14 16 8 N -0.53 -12.07 5.35 -883.00 -4.73 -16.80 16 9 C 0.06 1.53 4.84 86.30 0.42 1.95 16 10 C -0.08 -2.58 4.90 30.59 0.15 -2.43 16 11 C -0.07 -2.69 5.67 71.98 0.41 -2.28 16 12 S -0.22 -10.79 19.41 -56.49 -1.10 -11.88 16 13 C -0.52 -31.33 10.04 67.95 0.68 -30.65 16 14 H 0.05 3.26 8.03 -2.91 -0.02 3.24 16 15 C 0.04 2.19 5.50 84.86 0.47 2.66 16 16 N -0.92 -57.41 13.97 21.65 0.30 -57.11 16 17 Si 0.93 44.61 27.74 68.60 1.90 46.52 16 18 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.23 -10.61 6.74 99.48 0.67 -9.94 16 21 C 0.03 0.70 4.81 86.65 0.42 1.11 16 22 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 23 H 0.10 1.16 7.84 -2.91 -0.02 1.14 16 24 H 0.12 1.27 7.87 -2.91 -0.02 1.24 16 25 H 0.07 0.98 7.79 -2.39 -0.02 0.96 16 26 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 27 H 0.08 0.97 7.80 -2.38 -0.02 0.95 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.81 7.67 -2.39 -0.02 0.79 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 0.95 7.97 -2.39 -0.02 0.93 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.05 7.18 -2.39 -0.02 2.04 16 35 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 36 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 37 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.08 1.68 7.77 -2.39 -0.02 1.66 16 39 H 0.05 0.94 7.93 -2.39 -0.02 0.92 16 Total: -1.00 -65.48 326.71 1.95 -63.53 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.94 Total: 11.34 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 4.63 Total: -35.60 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -4.42 Total: -73.90 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.52 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.10 Total: -11.88 kcal Total: -65.48 1.95 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.739 kcal (2) G-P(sol) polarization free energy of solvation -65.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds