Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47190 * 2 1 4 4 C 1.52994 * 109.47065 * 239.99638 * 2 1 3 5 5 C 1.50699 * 109.46938 * 174.89305 * 4 2 1 6 6 H 1.08001 * 120.00498 * 355.14243 * 5 4 2 7 7 C 1.37882 * 120.00050 * 175.14931 * 5 4 2 8 8 N 1.31515 * 120.00077 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00118 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47305 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47190 * 59.99950 * 9 7 5 12 12 H 1.48495 * 109.47227 * 299.99959 * 9 7 5 13 13 N 1.46899 * 109.46742 * 119.99606 * 2 1 3 14 14 C 1.45465 * 111.00285 * 296.04032 * 13 2 1 15 15 C 1.50820 * 113.29673 * 220.61942 * 14 13 2 16 16 C 1.50716 * 114.97682 * 273.04960 * 15 14 13 17 17 H 1.09004 * 114.64353 * 194.16387 * 16 15 14 18 18 C 1.55970 * 99.96301 * 317.55876 * 16 15 14 19 19 C 1.51911 * 111.98496 * 88.25063 * 18 16 15 20 20 C 1.50320 * 113.34785 * 0.97402 * 19 18 16 21 21 H 1.09002 * 107.45922 * 134.63139 * 20 19 18 22 22 C 1.51003 * 120.64574 * 257.62827 * 20 19 18 23 23 S 1.83605 * 107.02865 * 65.43059 * 16 15 14 24 24 H 1.08999 * 109.47340 * 293.35023 * 1 2 3 25 25 H 1.09002 * 109.46676 * 53.34660 * 1 2 3 26 26 H 1.08992 * 109.47534 * 173.34226 * 1 2 3 27 27 H 1.08990 * 109.47839 * 54.88642 * 4 2 1 28 28 H 1.09008 * 109.46958 * 294.88492 * 4 2 1 29 29 H 0.97000 * 120.00038 * 0.02562 * 8 7 5 30 30 H 1.09008 * 108.71704 * 341.60332 * 14 13 2 31 31 H 1.09000 * 108.71846 * 99.62895 * 14 13 2 32 32 H 1.09000 * 108.37886 * 34.47212 * 15 14 13 33 33 H 1.09001 * 108.38149 * 151.79759 * 15 14 13 34 34 H 1.08997 * 108.98956 * 208.92196 * 18 16 15 35 35 H 1.09006 * 108.98534 * 327.71788 * 18 16 15 36 36 H 1.08999 * 108.71459 * 121.98184 * 19 18 16 37 37 H 1.08991 * 108.72195 * 240.11690 * 19 18 16 38 38 H 1.09002 * 108.68996 * 302.92108 * 22 20 19 39 39 H 1.08999 * 108.68708 * 184.96510 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5417 -0.6127 -1.3140 6 1 4.0720 -0.0169 -0.5859 7 6 4.2386 -1.2739 -2.3030 8 7 3.5930 -1.9997 -3.1895 9 14 6.1000 -1.1387 -2.3839 10 1 6.6050 -1.9371 -3.5296 11 1 6.6891 -1.6561 -1.1227 12 1 6.4856 0.2840 -2.5632 13 7 2.0196 -0.6924 1.1995 14 6 1.6313 0.0192 2.4073 15 6 2.7191 0.0605 3.4511 16 6 2.7527 -1.1239 4.3825 17 1 3.3673 -0.9853 5.2721 18 6 1.2271 -1.2931 4.6590 19 6 0.5591 -2.1911 3.6318 20 6 1.5123 -2.7299 2.6019 21 1 1.3010 -3.7928 2.4850 22 6 1.5661 -2.1328 1.2160 23 16 3.1792 -2.5937 3.3681 24 1 -0.3634 0.4073 0.9435 25 1 -0.3633 0.6135 -0.8245 26 1 -0.3634 -1.0206 -0.1191 27 1 1.6039 -0.2633 -2.1368 28 1 1.7534 -1.7721 -1.2044 29 1 2.6264 -2.0697 -3.1478 30 1 1.3638 1.0416 2.1402 31 1 0.7550 -0.4686 2.8343 32 1 3.6811 0.1253 2.9426 33 1 2.5870 0.9618 4.0497 34 1 1.0921 -1.7263 5.6501 35 1 0.7511 -0.3128 4.6333 36 1 0.0938 -3.0295 4.1502 37 1 -0.2179 -1.6217 3.1220 38 1 0.5724 -2.1913 0.7717 39 1 2.2527 -2.7222 0.6082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599552796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = 1.176047 kcal Electronic energy + Delta-G solvation = -18373.110796 eV Core-core repulsion = 15827.437125 eV Total energy + Delta-G solvation = -2545.673671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94489 -37.67146 -35.02722 -34.18217 -32.16578 -29.16833 -28.41665 -27.49648 -25.03289 -24.04813 -22.18917 -21.44829 -19.80971 -18.84854 -17.90713 -17.25704 -16.93123 -15.67938 -15.50728 -15.41627 -15.12911 -14.88954 -14.69775 -14.02800 -13.81126 -13.46062 -13.13055 -13.05283 -12.94937 -12.69499 -12.54315 -12.39886 -12.32773 -11.98692 -11.96451 -11.69098 -11.63942 -11.25050 -10.97519 -10.59396 -10.57920 -10.45574 -8.77396 -8.55320 -8.47494 -6.19629 0.99262 1.43518 1.50784 1.60444 1.78514 2.60749 2.96758 3.28827 3.37622 3.61513 3.87099 4.01795 4.06017 4.19078 4.20215 4.21925 4.37745 4.43694 4.48474 4.53733 4.66377 4.71026 4.84904 4.89934 4.99614 5.00924 5.03911 5.09415 5.12663 5.15335 5.18185 5.25620 5.46544 5.54682 6.12919 6.32059 6.34736 6.57547 6.76884 7.55818 8.85692 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.007682 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.576429 B = 3643.811707 C = 4111.280794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 H 0.061 0.939 4 C 0.021 3.979 5 C -0.569 4.569 6 H 0.043 0.957 7 C -0.045 4.045 8 N -0.949 5.949 9 Si 1.109 2.891 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.526 5.526 14 C 0.030 3.970 15 C -0.115 4.115 16 C -0.020 4.020 17 H 0.143 0.857 18 C -0.118 4.118 19 C -0.112 4.112 20 C -0.021 4.021 21 H 0.099 0.901 22 C 0.082 3.918 23 S -0.358 6.358 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.050 0.950 27 H -0.015 1.015 28 H -0.008 1.008 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 3.160 18.424 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.004 4.004 3 H 0.079 0.921 4 C -0.017 4.017 5 C -0.608 4.608 6 H 0.062 0.938 7 C -0.241 4.241 8 N -0.589 5.589 9 Si 0.933 3.067 10 H -0.211 1.211 11 H -0.206 1.206 12 H -0.195 1.195 13 N -0.250 5.250 14 C -0.097 4.097 15 C -0.154 4.154 16 C -0.148 4.148 17 H 0.161 0.839 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.150 4.150 21 H 0.117 0.883 22 C -0.046 4.046 23 S -0.131 6.131 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.003 0.997 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.990 2.006 17.449 18.557 hybrid contribution -2.836 0.780 0.163 2.946 sum -8.826 2.786 17.611 19.895 Atomic orbital electron populations 1.22444 0.96826 1.01607 1.02436 1.21540 0.92088 0.96622 0.90111 0.92086 1.19207 0.95826 0.94130 0.92502 1.22220 0.93285 1.31506 1.13747 0.93842 1.27114 1.10541 0.93412 0.92989 1.70929 1.09551 1.40998 1.37437 0.83014 0.70457 0.77104 0.76149 1.21112 1.20632 1.19474 1.62100 1.61174 1.00355 1.01410 1.21970 0.98232 0.98682 0.90849 1.21127 1.00031 0.97866 0.96392 1.24017 0.99373 0.92689 0.98720 0.83914 1.22563 0.91791 1.01374 0.99968 1.21253 0.97795 1.01033 0.94907 1.22867 0.92060 1.03853 0.96173 0.88268 1.22189 0.98149 0.90131 0.94134 1.88325 1.25143 1.43073 1.56520 0.90802 0.92402 0.93083 0.99697 0.98942 0.93901 0.91703 0.89863 0.93993 0.88892 0.89282 0.88472 0.88473 0.89425 0.93268 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.47 8.65 71.98 0.62 -4.85 16 2 C 0.10 4.25 2.09 44.91 0.09 4.35 16 3 H 0.06 2.57 7.97 -2.39 -0.02 2.55 16 4 C 0.02 1.08 3.62 29.85 0.11 1.18 16 5 C -0.57 -33.71 8.84 25.60 0.23 -33.49 16 6 H 0.04 2.61 7.75 -2.91 -0.02 2.59 16 7 C -0.05 -2.74 5.46 84.66 0.46 -2.28 16 8 N -0.95 -61.40 13.65 21.45 0.29 -61.11 16 9 Si 1.11 54.63 29.90 68.60 2.05 56.68 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.53 -19.71 4.19 -871.35 -3.65 -23.36 16 14 C 0.03 0.83 3.55 85.87 0.30 1.13 16 15 C -0.11 -2.91 4.47 29.14 0.13 -2.78 16 16 C -0.02 -0.45 4.90 30.88 0.15 -0.30 16 17 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 18 C -0.12 -1.90 5.28 31.26 0.16 -1.74 16 19 C -0.11 -2.09 5.06 29.37 0.15 -1.94 16 20 C -0.02 -0.59 2.86 29.08 0.08 -0.50 16 21 H 0.10 2.70 8.12 -2.42 -0.02 2.68 16 22 C 0.08 2.99 4.03 84.84 0.34 3.33 16 23 S -0.36 -11.72 21.80 -56.49 -1.23 -12.95 16 24 H 0.07 1.85 6.93 -2.39 -0.02 1.84 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.61 6.33 -2.39 -0.02 1.60 16 27 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 28 H -0.01 -0.43 6.33 -2.38 -0.02 -0.44 16 29 H 0.25 16.38 7.19 -92.71 -0.67 15.71 16 30 H 0.06 1.71 7.14 -2.38 -0.02 1.69 16 31 H 0.08 1.87 2.55 -2.39 -0.01 1.86 16 32 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.26 6.64 -2.38 -0.02 1.24 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.50 6.61 -2.39 -0.02 1.49 16 38 H 0.05 1.69 5.69 -2.39 -0.01 1.67 16 39 H 0.04 1.76 7.57 -2.39 -0.02 1.75 16 Total: -1.00 -72.13 293.40 1.42 -70.71 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.12 Total: 7.92 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.84 Total: -37.89 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.36 Total: -84.47 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 2.05 Total: 56.68 kcal Atomic # 16 Polarization: -11.72 SS G_CDS: -1.23 Total: -12.95 kcal Total: -72.13 1.42 -70.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599552796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.888 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds