Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00656 * 2 1 4 4 N 1.46898 * 109.47458 * 124.99854 * 3 2 1 5 5 C 1.46908 * 110.99606 * 69.80016 * 4 3 2 6 6 C 1.50706 * 109.46880 * 71.51765 * 5 4 3 7 7 H 1.08001 * 119.99646 * 5.01830 * 6 5 4 8 8 C 1.37871 * 119.99726 * 185.02449 * 6 5 4 9 9 N 1.31515 * 120.00042 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99925 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46902 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47014 * 119.99880 * 10 8 6 13 13 H 1.48500 * 109.47028 * 239.99894 * 10 8 6 14 14 C 1.46897 * 111.00003 * 305.85195 * 4 3 2 15 15 C 1.52996 * 109.47002 * 278.64285 * 14 4 3 16 16 C 1.53002 * 110.30738 * 186.49730 * 15 14 4 17 17 C 1.53715 * 110.34320 * 308.66931 * 15 14 4 18 18 C 1.52936 * 112.48900 * 116.04629 * 17 15 14 19 19 C 1.55155 * 108.96484 * 30.10203 * 18 17 15 20 20 S 1.83399 * 110.34202 * 64.32563 * 15 14 4 21 21 H 1.07992 * 120.00467 * 179.97438 * 1 2 3 22 22 H 1.08002 * 119.99807 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.99807 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46831 * 5.00228 * 3 2 1 25 25 H 1.08996 * 109.47569 * 245.00594 * 3 2 1 26 26 H 1.08996 * 109.46711 * 191.51509 * 5 4 3 27 27 H 1.08993 * 109.47196 * 311.51740 * 5 4 3 28 28 H 0.97008 * 119.99774 * 180.02562 * 9 8 6 29 29 H 1.08995 * 109.47703 * 38.64646 * 14 4 3 30 30 H 1.09002 * 109.46909 * 158.64484 * 14 4 3 31 31 H 1.09005 * 109.46737 * 64.95507 * 16 15 14 32 32 H 1.08992 * 109.47296 * 184.95739 * 16 15 14 33 33 H 1.08998 * 109.46993 * 304.96044 * 16 15 14 34 34 H 1.08994 * 108.88555 * 236.83979 * 17 15 14 35 35 H 1.08995 * 108.88452 * 355.25506 * 17 15 14 36 36 H 1.08998 * 109.60366 * 150.03251 * 18 17 15 37 37 H 1.09007 * 109.60410 * 270.16926 * 18 17 15 38 38 H 1.09001 * 111.12943 * 76.46926 * 19 18 17 39 39 H 1.09003 * 111.12884 * 200.60630 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9964 1.3318 1.1345 5 6 4.0988 0.3822 0.9321 6 6 5.0161 0.8998 -0.1458 7 1 4.8478 1.8765 -0.5749 8 6 6.0699 0.1264 -0.5842 9 7 6.2750 -1.0628 -0.0613 10 14 7.2065 0.7677 -1.9208 11 1 6.7634 2.1217 -2.3397 12 1 8.5944 0.8403 -1.3975 13 1 7.1649 -0.1495 -3.0879 14 6 2.2964 1.0643 2.3980 15 6 1.6274 2.3484 2.8922 16 6 1.0296 2.1338 4.2841 17 6 2.6415 3.5032 2.9185 18 6 2.2772 4.6240 1.9439 19 6 0.7341 4.6781 1.7917 20 16 0.3266 2.8833 1.7153 21 1 -0.5400 -0.9352 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3587 2.1316 0.0896 25 1 2.6213 1.4025 -0.9314 26 1 4.6572 0.2704 1.8615 27 1 3.6950 -0.5847 0.6321 28 1 7.0167 -1.6067 -0.3694 29 1 1.5381 0.2978 2.2381 30 1 3.0121 0.7173 3.1433 31 1 1.8306 1.9405 4.9977 32 1 0.4818 3.0265 4.5858 33 1 0.3506 1.2815 4.2605 34 1 2.6835 3.9130 3.9277 35 1 3.6257 3.1145 2.6573 36 1 2.6402 5.5766 2.3297 37 1 2.7337 4.4278 0.9736 38 1 0.2700 5.1484 2.6586 39 1 0.4476 5.1869 0.8712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600162335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = 5.458859 kcal Electronic energy + Delta-G solvation = -17962.465189 eV Core-core repulsion = 15416.977234 eV Total energy + Delta-G solvation = -2545.487954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61316 -37.04973 -34.91611 -33.74310 -32.81096 -29.21867 -27.69089 -27.32892 -25.59179 -23.28706 -22.60232 -21.07098 -20.09567 -18.37165 -17.16504 -16.85690 -16.73844 -16.24271 -15.76688 -15.25874 -15.08756 -14.56288 -14.43030 -14.08381 -13.99507 -13.43992 -13.29771 -13.19719 -12.71333 -12.67744 -12.47529 -12.34526 -12.25826 -12.12071 -12.05130 -11.78930 -11.49747 -11.35451 -11.16140 -10.61364 -10.54608 -10.17411 -8.94058 -8.17504 -8.10041 -6.26185 1.02919 1.39667 1.40267 1.43630 1.53811 1.56053 2.41058 3.14903 3.39128 3.75897 3.88025 4.08240 4.17041 4.23715 4.28999 4.42202 4.49755 4.57707 4.72855 4.74612 4.78643 4.86062 4.93256 5.02382 5.04854 5.16089 5.24563 5.26165 5.28060 5.37620 5.46866 5.52044 5.69138 5.81141 5.90461 6.15362 6.44585 6.72402 6.91911 7.43189 8.93190 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.006937 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.603203 B = 4035.435614 C = 4342.149229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.187 4.187 3 C 0.065 3.935 4 N -0.514 5.514 5 C 0.206 3.794 6 C -0.510 4.510 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.937 5.937 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.069 3.931 15 C 0.009 3.991 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.060 4.060 20 S -0.316 6.316 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.070 0.930 24 H 0.130 0.870 25 H 0.047 0.953 26 H -0.004 1.004 27 H -0.032 1.032 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 10.756 6.410 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.207 4.207 3 C -0.065 4.065 4 N -0.236 5.236 5 C 0.079 3.921 6 C -0.549 4.549 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.578 5.578 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.208 1.208 14 C -0.061 4.061 15 C -0.101 4.101 16 C -0.184 4.184 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.208 4.208 20 S -0.086 6.086 21 H 0.118 0.882 22 H 0.128 0.872 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.066 0.934 26 H 0.014 0.986 27 H -0.015 1.015 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.522 10.512 5.823 17.355 hybrid contribution 1.552 -0.896 -0.232 1.807 sum -10.970 9.616 5.591 15.623 Atomic orbital electron populations 1.23871 0.94878 1.02105 1.00128 1.23529 0.97175 0.99462 1.00554 1.22161 0.94768 0.96001 0.93524 1.62209 1.09425 1.50749 1.01168 1.19429 0.88605 0.89133 0.94916 1.21458 1.11091 1.02371 1.19940 0.92151 1.25867 0.99515 0.95036 0.99322 1.70100 1.31474 1.11583 1.44635 0.85404 0.78417 0.78633 0.78602 1.18703 1.20409 1.20785 1.22057 0.96494 0.94825 0.92734 1.23264 0.93667 0.97467 0.95719 1.21960 1.00881 1.02941 0.92591 1.21943 0.99321 0.93437 1.00299 1.22231 0.93862 0.99005 1.00249 1.24429 0.97811 0.92217 1.06322 1.87679 1.48402 1.10231 1.62260 0.88188 0.87185 0.91181 0.85259 0.93419 0.98568 1.01475 0.92929 0.94909 0.91879 0.91002 0.90350 0.92378 0.90202 0.91632 0.88720 0.92317 0.87729 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 13.86 67.79 0.94 -4.57 16 2 C -0.19 -7.33 7.21 25.65 0.18 -7.15 16 3 C 0.06 2.65 5.20 85.56 0.45 3.09 16 4 N -0.51 -22.08 3.51 -905.38 -3.18 -25.26 16 5 C 0.21 11.04 4.61 85.56 0.39 11.44 16 6 C -0.51 -29.21 8.38 25.60 0.21 -28.99 16 7 H 0.06 3.42 7.70 -2.91 -0.02 3.40 16 8 C 0.00 0.00 5.46 84.65 0.46 0.46 16 9 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 10 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 11 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 C 0.07 2.51 4.05 86.30 0.35 2.86 16 15 C 0.01 0.25 1.00 -10.55 -0.01 0.24 16 16 C -0.12 -2.76 8.37 71.98 0.60 -2.16 16 17 C -0.11 -2.97 5.37 30.81 0.17 -2.81 16 18 C -0.11 -2.68 6.34 31.31 0.20 -2.48 16 19 C -0.06 -1.22 7.53 72.72 0.55 -0.67 16 20 S -0.32 -8.58 16.77 -56.49 -0.95 -9.53 16 21 H 0.10 2.84 8.06 -2.91 -0.02 2.81 16 22 H 0.11 3.30 6.76 -2.91 -0.02 3.28 16 23 H 0.07 3.14 6.95 -2.91 -0.02 3.12 16 24 H 0.13 4.73 4.06 -17.76 -0.07 4.65 16 25 H 0.05 2.21 7.17 -2.39 -0.02 2.20 16 26 H 0.00 -0.22 7.65 -2.39 -0.02 -0.23 16 27 H -0.03 -1.93 6.50 -2.39 -0.02 -1.94 16 28 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 29 H 0.03 1.24 6.22 -2.39 -0.01 1.23 16 30 H 0.06 2.39 7.55 -2.39 -0.02 2.37 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.73 7.62 -2.39 -0.02 1.72 16 35 H 0.06 2.23 7.10 -2.39 -0.02 2.21 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -63.96 310.46 3.61 -60.35 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.94 Total: 15.07 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 4.49 Total: -30.75 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.90 Total: -82.25 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -0.95 Total: -9.53 kcal Total: -63.96 3.61 -60.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600162335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.806 kcal (2) G-P(sol) polarization free energy of solvation -63.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds