Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 110.99946 * 2 1 4 4 C 1.53007 * 109.46617 * 298.40625 * 3 2 1 5 5 C 1.50695 * 115.55065 * 306.04913 * 4 3 2 6 6 H 1.07996 * 119.99997 * 144.54638 * 5 4 3 7 7 C 1.37882 * 120.00002 * 324.54936 * 5 4 3 8 8 N 1.31510 * 120.00097 * 3.12299 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 183.11727 * 7 5 4 10 10 H 1.48503 * 109.46954 * 59.99924 * 9 7 5 11 11 H 1.48501 * 109.47260 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47565 * 300.00148 * 9 7 5 13 13 C 1.53002 * 117.49723 * 160.38608 * 4 3 2 14 14 C 1.52999 * 117.49910 * 91.72477 * 4 3 2 15 15 C 1.46898 * 111.00160 * 123.95087 * 2 1 3 16 16 H 1.09003 * 109.31186 * 293.98796 * 15 2 1 17 17 C 1.52566 * 109.49489 * 53.66904 * 15 2 1 18 18 C 1.52579 * 110.84370 * 190.70227 * 17 15 2 19 19 C 1.53096 * 109.95649 * 289.37082 * 18 17 15 20 20 S 1.81751 * 108.84247 * 63.02322 * 19 18 17 21 21 C 1.53102 * 109.39128 * 174.23760 * 15 2 1 22 22 H 1.08996 * 109.47503 * 297.75197 * 1 2 3 23 23 H 1.09004 * 109.47261 * 57.76207 * 1 2 3 24 24 H 1.09008 * 109.46762 * 177.75155 * 1 2 3 25 25 H 1.09000 * 109.47054 * 58.39866 * 3 2 1 26 26 H 1.09000 * 109.47312 * 178.40937 * 3 2 1 27 27 H 0.97001 * 120.00164 * 185.02780 * 8 7 5 28 28 H 1.08998 * 117.49595 * 359.97438 * 13 4 3 29 29 H 1.08997 * 117.50312 * 145.01917 * 13 4 3 30 30 H 1.08997 * 117.49792 * 214.97862 * 14 4 3 31 31 H 1.09003 * 117.50064 * 359.97438 * 14 4 3 32 32 H 1.09003 * 109.12814 * 70.36941 * 17 15 2 33 33 H 1.09001 * 109.17050 * 311.06309 * 17 15 2 34 34 H 1.08993 * 109.38980 * 169.22018 * 18 17 15 35 35 H 1.09006 * 109.30990 * 49.46642 * 18 17 15 36 36 H 1.09004 * 109.57643 * 303.21957 * 19 18 17 37 37 H 1.08998 * 109.57750 * 182.82990 * 19 18 17 38 38 H 1.09005 * 109.57605 * 57.02032 * 21 15 2 39 39 H 1.08998 * 109.57372 * 296.76203 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.5374 2.0935 -1.2689 5 6 1.8568 1.3949 -2.5654 6 1 1.1660 1.4513 -3.3936 7 6 3.0310 0.6836 -2.6942 8 7 3.8430 0.5633 -1.6668 9 14 3.4681 -0.1094 -4.3280 10 1 3.5664 0.9381 -5.3761 11 1 4.7718 -0.8099 -4.2052 12 1 2.4140 -1.0863 -4.7020 13 6 1.5731 3.6231 -1.2633 14 6 0.2319 2.8880 -1.1975 15 6 1.9954 -0.7659 1.1376 16 1 1.7342 -0.2579 2.0660 17 6 1.3825 -2.1630 1.1381 18 6 1.6972 -2.8934 2.4402 19 6 3.1826 -3.2611 2.4873 20 16 4.1660 -1.7326 2.4823 21 6 3.5190 -0.8636 1.0231 22 1 -0.3634 0.4785 0.9094 23 1 -0.3634 0.5482 -0.8693 24 1 -0.3633 -1.0270 -0.0403 25 1 1.6229 1.9037 0.8753 26 1 3.0847 1.3426 0.0285 27 1 4.7020 0.1261 -1.7760 28 1 1.9223 4.1150 -0.3555 29 1 1.8270 4.1241 -2.1974 30 1 -0.3958 2.9057 -2.0884 31 1 -0.3010 2.8961 -0.2467 32 1 1.7877 -2.7312 0.3008 33 1 0.3015 -2.0796 1.0255 34 1 1.0975 -3.8017 2.4997 35 1 1.4578 -2.2458 3.2837 36 1 3.4378 -3.8623 1.6146 37 1 3.3904 -3.8261 3.3959 38 1 3.9467 0.1379 0.9751 39 1 3.7828 -1.4169 0.1218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689515528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = 34.293538 kcal Electronic energy + Delta-G solvation = -18271.572332 eV Core-core repulsion = 15727.334743 eV Total energy + Delta-G solvation = -2544.237589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.33633 -36.29856 -33.71871 -32.02480 -29.88663 -27.69247 -25.81541 -25.19126 -23.58314 -21.51115 -21.12795 -19.43165 -18.82431 -16.58749 -15.99247 -15.18147 -14.74131 -14.44753 -13.98567 -13.95214 -13.25541 -13.20047 -12.99761 -12.78557 -12.45951 -11.76778 -11.45051 -11.35457 -11.21218 -11.07521 -10.90761 -10.81428 -10.50684 -10.43182 -10.36256 -10.11440 -9.90323 -9.31535 -9.25143 -8.79671 -8.56993 -8.05396 -7.33564 -7.09814 -5.83889 -3.92303 2.19458 2.95090 3.35892 3.40433 3.43867 4.47160 4.74060 4.91850 5.08599 5.21691 5.25965 5.42814 5.59755 5.63937 5.74302 5.87579 5.98356 6.01585 6.08142 6.16923 6.24257 6.29894 6.35688 6.40415 6.55895 6.63986 6.68576 6.74711 6.82355 6.88301 6.95306 7.22538 7.34440 7.64148 8.05228 8.21682 8.28224 8.57244 9.01848 9.68194 11.12796 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.008440 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.569230 B = 3316.804414 C = 3925.038028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.489 5.489 3 C 0.104 3.896 4 C 0.065 3.935 5 C -0.474 4.474 6 H 0.052 0.948 7 C 0.089 3.911 8 N -0.869 5.869 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.279 1.279 13 C -0.210 4.210 14 C -0.219 4.219 15 C 0.093 3.907 16 H 0.030 0.970 17 C -0.128 4.128 18 C -0.117 4.117 19 C -0.078 4.078 20 S -0.304 6.304 21 C -0.040 4.040 22 H 0.001 0.999 23 H 0.080 0.920 24 H 0.052 0.948 25 H -0.021 1.021 26 H 0.123 0.877 27 H 0.256 0.744 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -5.502 7.130 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.212 5.212 3 C -0.022 4.022 4 C 0.065 3.935 5 C -0.511 4.511 6 H 0.070 0.930 7 C -0.114 4.114 8 N -0.507 5.507 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.249 4.249 14 C -0.256 4.256 15 C -0.017 4.017 16 H 0.048 0.952 17 C -0.166 4.166 18 C -0.157 4.157 19 C -0.226 4.226 20 S -0.078 6.078 21 C -0.188 4.188 22 H 0.019 0.981 23 H 0.098 0.902 24 H 0.071 0.929 25 H -0.004 1.004 26 H 0.141 0.859 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.706 -5.577 7.480 9.485 hybrid contribution -1.037 -0.260 -1.001 1.465 sum -2.743 -5.837 6.479 9.142 Atomic orbital electron populations 1.22472 0.89579 1.00214 0.99984 1.61703 1.05261 1.15199 1.39031 1.21930 1.03330 0.84794 0.92188 1.18979 0.91874 0.87326 0.95354 1.20260 1.04758 1.30272 0.95784 0.93003 1.24712 0.96546 0.94508 0.95640 1.69791 1.09153 1.43436 1.28295 0.86735 0.77474 0.79481 0.84541 1.20800 1.21452 1.20484 1.23014 1.01391 1.00503 0.99966 1.22960 0.91693 1.11439 0.99544 1.21615 0.93412 0.93915 0.92794 0.95212 1.21703 1.01781 0.96062 0.97037 1.21718 0.94330 1.00518 0.99095 1.23353 0.97157 0.97009 1.05065 1.86715 1.55360 1.22706 1.43069 1.23563 0.96907 1.03627 0.94723 0.98097 0.90174 0.92921 1.00353 0.85936 0.93385 0.92003 0.90485 0.90915 0.91936 0.91215 0.90855 0.91371 0.91158 0.90185 0.88686 0.86481 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 8.64 60.06 0.52 1.02 16 2 N -0.49 -10.18 4.04 -235.08 -0.95 -11.13 16 3 C 0.10 2.37 3.71 -3.82 -0.01 2.36 16 4 C 0.07 1.56 1.30 -155.66 -0.20 1.35 16 5 C -0.47 -12.37 8.74 -34.44 -0.30 -12.67 16 6 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 7 C 0.09 2.29 5.30 -17.82 -0.09 2.19 16 8 N -0.87 -22.03 8.95 55.43 0.50 -21.53 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.21 -4.70 9.96 -26.69 -0.27 -4.97 16 14 C -0.22 -4.70 8.24 -26.69 -0.22 -4.92 16 15 C 0.09 1.70 1.80 -67.88 -0.12 1.57 16 16 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 17 C -0.13 -1.98 4.82 -27.17 -0.13 -2.11 16 18 C -0.12 -1.50 5.76 -26.90 -0.15 -1.65 16 19 C -0.08 -1.02 6.45 37.21 0.24 -0.78 16 20 S -0.30 -5.01 22.33 -107.50 -2.40 -7.41 16 21 C -0.04 -0.76 4.82 37.21 0.18 -0.58 16 22 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 23 H 0.08 1.64 5.97 -51.93 -0.31 1.33 16 24 H 0.05 0.89 5.88 -51.92 -0.31 0.59 16 25 H -0.02 -0.48 8.09 -51.93 -0.42 -0.90 16 26 H 0.12 3.00 3.86 -51.93 -0.20 2.80 16 27 H 0.26 6.37 8.32 -40.82 -0.34 6.03 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.07 1.09 5.64 -51.93 -0.29 0.80 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.12 2.44 6.04 -51.93 -0.31 2.13 16 39 H 0.10 1.99 7.91 -51.93 -0.41 1.58 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -25.38 304.56 -10.29 -35.67 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.44 Total: 3.31 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -0.57 Total: -19.19 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: -0.45 Total: -32.66 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -2.40 Total: -7.41 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.38 -10.29 -35.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689515528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.968 kcal (2) G-P(sol) polarization free energy of solvation -25.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds