Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 110.99946 * 2 1 4 4 C 1.53007 * 109.46617 * 298.40625 * 3 2 1 5 5 C 1.50695 * 115.55065 * 306.04913 * 4 3 2 6 6 H 1.07996 * 119.99997 * 144.54638 * 5 4 3 7 7 C 1.37882 * 120.00002 * 324.54936 * 5 4 3 8 8 N 1.31510 * 120.00097 * 3.12299 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 183.11727 * 7 5 4 10 10 H 1.48503 * 109.46954 * 59.99924 * 9 7 5 11 11 H 1.48501 * 109.47260 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47565 * 300.00148 * 9 7 5 13 13 C 1.53002 * 117.49723 * 160.38608 * 4 3 2 14 14 C 1.52999 * 117.49910 * 91.72477 * 4 3 2 15 15 C 1.46898 * 111.00160 * 123.95087 * 2 1 3 16 16 H 1.09003 * 109.31186 * 293.98796 * 15 2 1 17 17 C 1.52566 * 109.49489 * 53.66904 * 15 2 1 18 18 C 1.52579 * 110.84370 * 190.70227 * 17 15 2 19 19 C 1.53096 * 109.95649 * 289.37082 * 18 17 15 20 20 S 1.81751 * 108.84247 * 63.02322 * 19 18 17 21 21 C 1.53102 * 109.39128 * 174.23760 * 15 2 1 22 22 H 1.08996 * 109.47503 * 297.75197 * 1 2 3 23 23 H 1.09004 * 109.47261 * 57.76207 * 1 2 3 24 24 H 1.09008 * 109.46762 * 177.75155 * 1 2 3 25 25 H 1.09000 * 109.47054 * 58.39866 * 3 2 1 26 26 H 1.09000 * 109.47312 * 178.40937 * 3 2 1 27 27 H 0.97001 * 120.00164 * 185.02780 * 8 7 5 28 28 H 1.08998 * 117.49595 * 359.97438 * 13 4 3 29 29 H 1.08997 * 117.50312 * 145.01917 * 13 4 3 30 30 H 1.08997 * 117.49792 * 214.97862 * 14 4 3 31 31 H 1.09003 * 117.50064 * 359.97438 * 14 4 3 32 32 H 1.09003 * 109.12814 * 70.36941 * 17 15 2 33 33 H 1.09001 * 109.17050 * 311.06309 * 17 15 2 34 34 H 1.08993 * 109.38980 * 169.22018 * 18 17 15 35 35 H 1.09006 * 109.30990 * 49.46642 * 18 17 15 36 36 H 1.09004 * 109.57643 * 303.21957 * 19 18 17 37 37 H 1.08998 * 109.57750 * 182.82990 * 19 18 17 38 38 H 1.09005 * 109.57605 * 57.02032 * 21 15 2 39 39 H 1.08998 * 109.57372 * 296.76203 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.5374 2.0935 -1.2689 5 6 1.8568 1.3949 -2.5654 6 1 1.1660 1.4513 -3.3936 7 6 3.0310 0.6836 -2.6942 8 7 3.8430 0.5633 -1.6668 9 14 3.4681 -0.1094 -4.3280 10 1 3.5664 0.9381 -5.3761 11 1 4.7718 -0.8099 -4.2052 12 1 2.4140 -1.0863 -4.7020 13 6 1.5731 3.6231 -1.2633 14 6 0.2319 2.8880 -1.1975 15 6 1.9954 -0.7659 1.1376 16 1 1.7342 -0.2579 2.0660 17 6 1.3825 -2.1630 1.1381 18 6 1.6972 -2.8934 2.4402 19 6 3.1826 -3.2611 2.4873 20 16 4.1660 -1.7326 2.4823 21 6 3.5190 -0.8636 1.0231 22 1 -0.3634 0.4785 0.9094 23 1 -0.3634 0.5482 -0.8693 24 1 -0.3633 -1.0270 -0.0403 25 1 1.6229 1.9037 0.8753 26 1 3.0847 1.3426 0.0285 27 1 4.7020 0.1261 -1.7760 28 1 1.9223 4.1150 -0.3555 29 1 1.8270 4.1241 -2.1974 30 1 -0.3958 2.9057 -2.0884 31 1 -0.3010 2.8961 -0.2467 32 1 1.7877 -2.7312 0.3008 33 1 0.3015 -2.0796 1.0255 34 1 1.0975 -3.8017 2.4997 35 1 1.4578 -2.2458 3.2837 36 1 3.4378 -3.8623 1.6146 37 1 3.3904 -3.8261 3.3959 38 1 3.9467 0.1379 0.9751 39 1 3.7828 -1.4169 0.1218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689515528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = 22.237244 kcal Electronic energy + Delta-G solvation = -18272.095132 eV Core-core repulsion = 15727.334743 eV Total energy + Delta-G solvation = -2544.760389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90214 -37.89115 -35.07944 -33.98731 -31.31018 -29.13526 -27.52797 -26.89130 -25.10787 -22.92645 -22.72522 -20.85303 -20.68037 -18.13828 -17.66154 -16.62200 -16.50245 -15.90655 -15.71420 -15.29343 -14.80173 -14.79344 -14.33001 -14.09585 -14.00667 -13.23808 -13.10508 -13.04448 -12.84701 -12.77781 -12.46930 -12.32024 -12.21473 -11.99822 -11.79719 -11.64773 -11.59390 -11.06264 -10.67561 -10.54645 -10.41586 -9.92579 -8.71659 -8.63702 -7.78483 -5.92898 0.92902 1.47576 1.50134 1.54722 1.65219 2.53867 3.14239 3.41714 3.75607 3.79270 3.93544 4.04693 4.13018 4.35371 4.37653 4.52043 4.56337 4.63400 4.68117 4.75036 4.78641 4.83861 4.88589 4.94672 5.01868 5.03255 5.10054 5.16726 5.23093 5.30995 5.41445 5.48137 5.56725 5.73844 6.13362 6.47889 6.64578 6.75232 7.04485 7.67719 9.13651 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.008440 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.569230 B = 3316.804414 C = 3925.038028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.507 5.507 3 C 0.116 3.884 4 C 0.041 3.959 5 C -0.493 4.493 6 H 0.037 0.963 7 C 0.057 3.943 8 N -0.871 5.871 9 Si 0.936 3.064 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.281 1.281 13 C -0.213 4.213 14 C -0.197 4.197 15 C 0.096 3.904 16 H 0.026 0.974 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.069 4.069 20 S -0.321 6.321 21 C -0.029 4.029 22 H 0.011 0.989 23 H 0.061 0.939 24 H 0.073 0.927 25 H -0.024 1.024 26 H 0.102 0.898 27 H 0.252 0.748 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -6.971 8.210 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.230 5.230 3 C -0.011 4.011 4 C 0.040 3.960 5 C -0.530 4.530 6 H 0.055 0.945 7 C -0.145 4.145 8 N -0.508 5.508 9 Si 0.764 3.236 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.207 1.207 13 C -0.251 4.251 14 C -0.234 4.234 15 C -0.014 4.014 16 H 0.044 0.956 17 C -0.161 4.161 18 C -0.149 4.149 19 C -0.217 4.217 20 S -0.095 6.095 21 C -0.178 4.178 22 H 0.029 0.971 23 H 0.080 0.920 24 H 0.091 0.909 25 H -0.006 1.006 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.627 -7.045 8.564 11.396 hybrid contribution -0.745 0.177 -1.316 1.523 sum -3.372 -6.868 7.248 10.539 Atomic orbital electron populations 1.22421 0.88439 1.01358 0.99557 1.61634 1.06440 1.14297 1.40677 1.21652 1.02041 0.85950 0.91477 1.19063 0.93994 0.87923 0.95036 1.20366 1.04890 1.31299 0.96456 0.94477 1.25183 0.96647 0.95026 0.97691 1.69929 1.08875 1.43197 1.28763 0.86011 0.76997 0.78566 0.82054 1.21004 1.21341 1.20715 1.23022 1.02246 0.99684 1.00167 1.22901 0.90967 1.09233 1.00318 1.21660 0.92972 0.95247 0.91540 0.95604 1.21671 1.01915 0.94153 0.98317 1.21682 0.94315 1.01575 0.97288 1.23514 0.96696 0.94806 1.06662 1.86732 1.56649 1.24904 1.41231 1.23224 0.97469 1.02116 0.94959 0.97091 0.92010 0.90885 1.00571 0.88086 0.93750 0.90941 0.91135 0.90857 0.90344 0.92467 0.89928 0.88031 0.90943 0.89820 0.85852 0.89347 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 8.64 127.69 1.10 2.22 16 2 N -0.51 -21.00 4.04 -897.66 -3.63 -24.63 16 3 C 0.12 5.32 3.71 86.30 0.32 5.64 16 4 C 0.04 1.94 1.30 -52.93 -0.07 1.87 16 5 C -0.49 -26.05 8.74 25.60 0.22 -25.83 16 6 H 0.04 2.02 7.81 -2.91 -0.02 1.99 16 7 C 0.06 2.96 5.30 84.66 0.45 3.40 16 8 N -0.87 -44.98 8.95 21.45 0.19 -44.79 16 9 Si 0.94 42.84 29.54 68.60 2.03 44.86 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C -0.21 -9.46 9.96 30.62 0.30 -9.16 16 14 C -0.20 -8.29 8.24 30.62 0.25 -8.04 16 15 C 0.10 3.43 1.80 44.81 0.08 3.51 16 16 H 0.03 0.95 8.06 -2.39 -0.02 0.93 16 17 C -0.12 -3.52 4.82 30.31 0.15 -3.38 16 18 C -0.11 -2.40 5.76 30.49 0.18 -2.22 16 19 C -0.07 -1.60 6.45 72.01 0.46 -1.13 16 20 S -0.32 -10.24 22.33 -56.49 -1.26 -11.50 16 21 C -0.03 -1.12 4.82 72.02 0.35 -0.77 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.06 2.48 5.97 -2.39 -0.01 2.47 16 24 H 0.07 2.33 5.88 -2.38 -0.01 2.32 16 25 H -0.02 -1.06 8.09 -2.39 -0.02 -1.08 16 26 H 0.10 5.09 3.86 -2.39 -0.01 5.08 16 27 H 0.25 12.85 8.32 -92.71 -0.77 12.08 16 28 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.08 2.21 5.64 -2.39 -0.01 2.20 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.61 8.06 -2.38 -0.02 1.60 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.09 3.85 6.04 -2.39 -0.01 3.83 16 39 H 0.07 3.02 7.91 -2.39 -0.02 3.00 16 Total: -1.00 -54.34 304.56 2.14 -52.21 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.01 Total: 17.73 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 3.80 Total: -33.88 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -3.44 Total: -69.42 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -10.24 SS G_CDS: -1.26 Total: -11.50 kcal Total: -54.34 2.14 -52.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689515528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -54.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds