Wall clock time and date at job start Mon Mar 30 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81401 * 109.47071 * 2 1 4 4 C 1.81399 * 102.99807 * 184.37840 * 3 2 1 5 5 C 1.53000 * 115.55219 * 326.60047 * 4 3 2 6 6 N 1.46894 * 109.47212 * 279.78770 * 5 4 3 7 7 C 1.46901 * 110.99815 * 183.74196 * 6 5 4 8 8 C 1.53006 * 109.46798 * 175.96332 * 7 6 5 9 9 C 1.50698 * 115.55162 * 282.53809 * 8 7 6 10 10 H 1.07997 * 119.99824 * 143.69590 * 9 8 7 11 11 C 1.37875 * 119.99915 * 323.70688 * 9 8 7 12 12 N 1.31516 * 120.00044 * 338.47367 * 11 9 8 13 13 Si 1.86803 * 119.99831 * 158.48142 * 11 9 8 14 14 H 1.48494 * 109.47473 * 59.99486 * 13 11 9 15 15 H 1.48508 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46938 * 299.99241 * 13 11 9 17 17 C 1.52999 * 117.49667 * 136.83607 * 8 7 6 18 18 C 1.53002 * 117.49826 * 68.21133 * 8 7 6 19 19 C 1.53001 * 117.50005 * 180.93208 * 4 3 2 20 20 C 1.53004 * 60.03372 * 252.47434 * 19 4 3 21 21 H 1.09010 * 109.46721 * 300.00230 * 1 2 3 22 22 H 1.08995 * 109.46833 * 59.99848 * 1 2 3 23 23 H 1.08989 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46998 * 240.00012 * 2 1 3 25 25 H 1.08998 * 109.47194 * 119.99779 * 2 1 3 26 26 H 1.09001 * 109.46714 * 39.79449 * 5 4 3 27 27 H 1.09005 * 109.46916 * 159.78690 * 5 4 3 28 28 H 1.00894 * 111.00672 * 307.70165 * 6 5 4 29 29 H 1.09001 * 109.47397 * 295.96439 * 7 6 5 30 30 H 1.09001 * 109.46952 * 55.96785 * 7 6 5 31 31 H 0.97000 * 119.99555 * 185.02572 * 12 11 9 32 32 H 1.09005 * 117.50170 * 359.97438 * 17 8 7 33 33 H 1.09002 * 117.50051 * 145.02022 * 17 8 7 34 34 H 1.08992 * 117.49816 * 214.97531 * 18 8 7 35 35 H 1.09000 * 117.49938 * 359.97438 * 18 8 7 36 36 H 1.09003 * 117.49922 * 359.97438 * 19 4 3 37 37 H 1.09000 * 117.50421 * 144.97806 * 19 4 3 38 38 H 1.09003 * 117.49811 * 107.49751 * 20 19 4 39 39 H 1.08996 * 117.50072 * 252.52145 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9322 1.5075 -0.1349 5 6 4.5103 0.2696 0.5538 6 7 4.6463 0.5288 1.9933 7 6 5.2815 -0.6069 2.6750 8 6 5.4973 -0.2607 4.1496 9 6 6.6650 0.6465 4.4402 10 1 6.5927 1.3853 5.2245 11 6 7.8256 0.5333 3.7045 12 7 8.0934 -0.5852 3.0666 13 14 9.0178 1.9686 3.6141 14 1 9.4906 2.3063 4.9806 15 1 10.1790 1.5950 2.7672 16 1 8.3317 3.1454 3.0228 17 6 5.1644 -1.3377 5.1841 18 6 4.2547 -0.1170 5.0307 19 6 4.7877 2.7760 -0.1422 20 6 4.6015 1.9724 -1.4308 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0275 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8423 -0.5776 0.3986 27 1 5.4891 0.0426 0.1313 28 1 5.1574 1.3826 2.1603 29 1 4.6378 -1.4832 2.5979 30 1 6.2428 -0.8199 2.2073 31 1 8.9424 -0.6915 2.6096 32 1 4.7912 -2.2927 4.8142 33 1 5.7901 -1.3903 6.0751 34 1 4.2820 0.6334 5.8207 35 1 3.2835 -0.2687 4.5597 36 1 4.2704 3.7324 -0.0663 37 1 5.7621 2.7288 0.3440 38 1 3.9616 2.4001 -2.2026 39 1 5.4532 1.3961 -1.7921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691841292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:51 Heat of formation + Delta-G solvation = 45.130147 kcal Electronic energy + Delta-G solvation = -17330.701050 eV Core-core repulsion = 14786.933372 eV Total energy + Delta-G solvation = -2543.767678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.86261 -36.59510 -33.38667 -32.61488 -32.20244 -27.13620 -25.53273 -23.83109 -22.76036 -22.16991 -20.99734 -20.30581 -18.99566 -16.59993 -15.99504 -15.54905 -14.78034 -14.70385 -14.48045 -14.04782 -13.73560 -13.68362 -13.03660 -12.65019 -12.33912 -11.79504 -11.57051 -11.48160 -11.39258 -11.33964 -11.13494 -10.91323 -10.80240 -10.58373 -10.40055 -10.16834 -10.03411 -9.63240 -9.15883 -9.11167 -8.62075 -8.15338 -7.35613 -7.26094 -6.11740 -4.08162 1.93024 2.76062 3.22674 3.29357 3.33553 3.79327 4.32029 4.71289 4.90125 4.97217 4.99789 5.03008 5.07601 5.41124 5.42666 5.71257 5.72335 5.75165 5.80228 5.86836 5.97414 6.01324 6.07749 6.10976 6.21594 6.23434 6.51708 6.67303 6.86520 6.93053 7.00094 7.15284 7.45949 7.55443 7.93636 8.07285 8.36011 8.47314 8.86654 9.46074 10.88460 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.006973 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.954725 B = 4014.501808 C = 4932.227798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 S -0.199 6.199 4 C -0.096 4.096 5 C 0.094 3.906 6 N -0.674 5.674 7 C 0.087 3.913 8 C 0.056 3.944 9 C -0.492 4.492 10 H 0.061 0.939 11 C 0.072 3.928 12 N -0.871 5.871 13 Si 0.881 3.119 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.273 1.273 17 C -0.204 4.204 18 C -0.194 4.194 19 C -0.141 4.141 20 C -0.161 4.161 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.346 0.654 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.262 0.738 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 1.912 -8.972 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.242 4.242 3 S 0.032 5.968 4 C -0.206 4.206 5 C -0.037 4.037 6 N -0.306 5.306 7 C -0.041 4.041 8 C 0.056 3.944 9 C -0.529 4.529 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.508 5.508 13 Si 0.708 3.292 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.243 4.243 18 C -0.232 4.232 19 C -0.180 4.180 20 C -0.203 4.203 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.165 0.835 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.088 2.548 -8.909 13.698 hybrid contribution 2.380 -0.435 -0.249 2.433 sum -7.708 2.113 -9.158 12.155 Atomic orbital electron populations 1.21490 0.92767 1.02230 1.02772 1.23324 0.99322 0.96395 1.05168 1.86082 1.01831 1.11964 1.96910 1.23456 0.93224 1.00341 1.03622 1.21532 0.98249 0.93408 0.90530 1.60499 1.57129 1.07137 1.05848 1.21631 0.97697 0.90043 0.94759 1.18849 0.92173 0.95680 0.87746 1.20524 0.97179 1.17275 1.17901 0.92118 1.24956 0.97566 0.95251 0.95311 1.69939 1.22814 1.23355 1.34697 0.86820 0.80262 0.83670 0.78407 1.20122 1.21363 1.19892 1.22950 1.04586 0.92354 1.04382 1.22712 0.95290 1.00540 1.04643 1.22931 1.00625 0.94287 1.00195 1.23400 1.02522 1.03424 0.90920 0.91744 0.92143 0.91415 0.90627 0.89180 0.91605 0.94970 0.83483 0.95149 0.90072 0.92807 0.92109 0.90717 0.91203 0.91114 0.88241 0.87799 0.88088 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.92 37.16 0.37 -1.04 16 2 C -0.09 -1.21 5.30 37.16 0.20 -1.01 16 3 S -0.20 -2.94 21.83 -107.50 -2.35 -5.29 16 4 C -0.10 -1.46 2.40 -90.58 -0.22 -1.68 16 5 C 0.09 1.64 5.44 -3.83 -0.02 1.62 16 6 N -0.67 -13.74 6.54 -113.78 -0.74 -14.48 16 7 C 0.09 2.00 5.33 -3.82 -0.02 1.98 16 8 C 0.06 1.39 1.84 -155.66 -0.29 1.10 16 9 C -0.49 -13.11 8.79 -34.44 -0.30 -13.42 16 10 H 0.06 1.64 7.90 -52.49 -0.41 1.23 16 11 C 0.07 1.90 5.06 -17.82 -0.09 1.81 16 12 N -0.87 -23.58 11.14 55.43 0.62 -22.96 16 13 Si 0.88 20.27 29.59 -169.99 -5.03 15.24 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 C -0.20 -4.78 9.88 -26.73 -0.26 -5.04 16 18 C -0.19 -4.38 9.95 -26.73 -0.27 -4.65 16 19 C -0.14 -2.05 9.51 -26.73 -0.25 -2.30 16 20 C -0.16 -2.10 9.95 -26.69 -0.27 -2.36 16 21 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.60 8.14 -51.94 -0.42 0.18 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.30 7.31 -51.93 -0.38 0.92 16 26 H 0.07 1.11 6.00 -51.93 -0.31 0.79 16 27 H 0.03 0.59 7.93 -51.93 -0.41 0.18 16 28 H 0.35 7.54 7.86 -39.30 -0.31 7.24 16 29 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 30 H 0.08 2.07 5.46 -51.93 -0.28 1.79 16 31 H 0.26 6.80 8.32 -40.82 -0.34 6.47 16 32 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.10 1.61 8.00 -51.93 -0.42 1.19 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -26.62 330.03 -10.67 -37.29 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.72 Total: 10.21 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -1.42 Total: -24.99 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.13 Total: -37.44 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.35 Total: -5.29 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.62 -10.67 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691841292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.424 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds