Wall clock time and date at job start Mon Mar 30 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81401 * 109.47071 * 2 1 4 4 C 1.81399 * 102.99807 * 184.37840 * 3 2 1 5 5 C 1.53000 * 115.55219 * 326.60047 * 4 3 2 6 6 N 1.46894 * 109.47212 * 279.78770 * 5 4 3 7 7 C 1.46901 * 110.99815 * 183.74196 * 6 5 4 8 8 C 1.53006 * 109.46798 * 175.96332 * 7 6 5 9 9 C 1.50698 * 115.55162 * 282.53809 * 8 7 6 10 10 H 1.07997 * 119.99824 * 143.69590 * 9 8 7 11 11 C 1.37875 * 119.99915 * 323.70688 * 9 8 7 12 12 N 1.31516 * 120.00044 * 338.47367 * 11 9 8 13 13 Si 1.86803 * 119.99831 * 158.48142 * 11 9 8 14 14 H 1.48494 * 109.47473 * 59.99486 * 13 11 9 15 15 H 1.48508 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46938 * 299.99241 * 13 11 9 17 17 C 1.52999 * 117.49667 * 136.83607 * 8 7 6 18 18 C 1.53002 * 117.49826 * 68.21133 * 8 7 6 19 19 C 1.53001 * 117.50005 * 180.93208 * 4 3 2 20 20 C 1.53004 * 60.03372 * 252.47434 * 19 4 3 21 21 H 1.09010 * 109.46721 * 300.00230 * 1 2 3 22 22 H 1.08995 * 109.46833 * 59.99848 * 1 2 3 23 23 H 1.08989 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46998 * 240.00012 * 2 1 3 25 25 H 1.08998 * 109.47194 * 119.99779 * 2 1 3 26 26 H 1.09001 * 109.46714 * 39.79449 * 5 4 3 27 27 H 1.09005 * 109.46916 * 159.78690 * 5 4 3 28 28 H 1.00894 * 111.00672 * 307.70165 * 6 5 4 29 29 H 1.09001 * 109.47397 * 295.96439 * 7 6 5 30 30 H 1.09001 * 109.46952 * 55.96785 * 7 6 5 31 31 H 0.97000 * 119.99555 * 185.02572 * 12 11 9 32 32 H 1.09005 * 117.50170 * 359.97438 * 17 8 7 33 33 H 1.09002 * 117.50051 * 145.02022 * 17 8 7 34 34 H 1.08992 * 117.49816 * 214.97531 * 18 8 7 35 35 H 1.09000 * 117.49938 * 359.97438 * 18 8 7 36 36 H 1.09003 * 117.49922 * 359.97438 * 19 4 3 37 37 H 1.09000 * 117.50421 * 144.97806 * 19 4 3 38 38 H 1.09003 * 117.49811 * 107.49751 * 20 19 4 39 39 H 1.08996 * 117.50072 * 252.52145 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9322 1.5075 -0.1349 5 6 4.5103 0.2696 0.5538 6 7 4.6463 0.5288 1.9933 7 6 5.2815 -0.6069 2.6750 8 6 5.4973 -0.2607 4.1496 9 6 6.6650 0.6465 4.4402 10 1 6.5927 1.3853 5.2245 11 6 7.8256 0.5333 3.7045 12 7 8.0934 -0.5852 3.0666 13 14 9.0178 1.9686 3.6141 14 1 9.4906 2.3063 4.9806 15 1 10.1790 1.5950 2.7672 16 1 8.3317 3.1454 3.0228 17 6 5.1644 -1.3377 5.1841 18 6 4.2547 -0.1170 5.0307 19 6 4.7877 2.7760 -0.1422 20 6 4.6015 1.9724 -1.4308 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0275 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8423 -0.5776 0.3986 27 1 5.4891 0.0426 0.1313 28 1 5.1574 1.3826 2.1603 29 1 4.6378 -1.4832 2.5979 30 1 6.2428 -0.8199 2.2073 31 1 8.9424 -0.6915 2.6096 32 1 4.7912 -2.2927 4.8142 33 1 5.7901 -1.3903 6.0751 34 1 4.2820 0.6334 5.8207 35 1 3.2835 -0.2687 4.5597 36 1 4.2704 3.7324 -0.0663 37 1 5.7621 2.7288 0.3440 38 1 3.9616 2.4001 -2.2026 39 1 5.4532 1.3961 -1.7921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691841292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:51 Heat of formation + Delta-G solvation = 32.118946 kcal Electronic energy + Delta-G solvation = -17331.265258 eV Core-core repulsion = 14786.933372 eV Total energy + Delta-G solvation = -2544.331886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.29495 -38.24131 -34.90030 -34.22564 -33.59988 -28.68925 -27.50451 -25.22159 -23.95239 -23.31798 -22.82500 -21.60401 -20.89037 -18.25844 -17.53368 -16.75118 -16.62738 -15.94712 -15.75541 -15.57783 -15.29222 -15.23470 -14.48955 -14.09996 -13.51601 -13.48194 -13.17306 -12.95239 -12.79472 -12.57289 -12.55284 -12.36408 -12.29670 -12.26570 -12.03314 -11.79110 -11.20324 -11.06295 -11.02066 -10.77861 -10.52576 -10.06049 -9.06159 -8.42601 -8.11658 -6.14988 0.82493 1.38579 1.42574 1.49485 1.64734 2.39378 2.62894 2.93792 3.37779 3.68093 3.77988 3.83376 4.06134 4.11444 4.13552 4.32077 4.49774 4.56050 4.60329 4.66247 4.68000 4.73173 4.82016 4.89879 4.91618 4.97432 5.01678 5.07159 5.14684 5.16802 5.23420 5.28306 5.56749 5.60809 5.96198 6.37432 6.46709 6.59781 6.85136 7.41492 8.86441 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.006973 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.954725 B = 4014.501808 C = 4932.227798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 S -0.216 6.216 4 C -0.109 4.109 5 C 0.099 3.901 6 N -0.670 5.670 7 C 0.101 3.899 8 C 0.031 3.969 9 C -0.512 4.512 10 H 0.048 0.952 11 C 0.038 3.962 12 N -0.893 5.893 13 Si 0.937 3.063 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.267 1.267 17 C -0.206 4.206 18 C -0.175 4.175 19 C -0.148 4.148 20 C -0.136 4.136 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.022 0.978 28 H 0.337 0.663 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 2.384 -10.076 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.236 4.236 3 S 0.015 5.985 4 C -0.220 4.220 5 C -0.032 4.032 6 N -0.300 5.300 7 C -0.028 4.028 8 C 0.030 3.970 9 C -0.549 4.549 10 H 0.067 0.933 11 C -0.163 4.163 12 N -0.530 5.530 13 Si 0.763 3.237 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.245 4.245 18 C -0.212 4.212 19 C -0.187 4.187 20 C -0.177 4.177 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.155 0.845 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.907 3.021 -10.014 15.112 hybrid contribution 2.601 -0.626 0.116 2.678 sum -8.305 2.396 -9.898 13.141 Atomic orbital electron populations 1.21493 0.90896 1.03518 1.02888 1.23372 1.00842 0.94707 1.04723 1.86114 1.01449 1.13936 1.97041 1.23373 0.93620 0.99580 1.05417 1.21516 0.97968 0.94969 0.88792 1.60486 1.56035 1.05776 1.07739 1.21355 0.96552 0.90912 0.94009 1.19002 0.92747 0.96339 0.88905 1.20680 0.98338 1.17682 1.18182 0.93340 1.25508 0.98912 0.96991 0.94915 1.70039 1.23209 1.24610 1.35119 0.85938 0.78454 0.81114 0.78202 1.20182 1.21044 1.19161 1.22945 1.04780 0.93065 1.03679 1.22658 0.95053 0.99765 1.03754 1.22932 0.99879 0.94453 1.01431 1.23467 1.02199 1.01810 0.90258 0.92399 0.91229 0.89496 0.89608 0.90999 0.91066 0.96015 0.84533 0.95014 0.92616 0.92801 0.90940 0.91644 0.91148 0.89894 0.87465 0.89219 0.86206 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.92 71.98 0.71 -1.73 16 2 C -0.09 -2.12 5.30 71.98 0.38 -1.74 16 3 S -0.22 -6.07 21.83 -56.49 -1.23 -7.30 16 4 C -0.11 -3.20 2.40 -10.77 -0.03 -3.22 16 5 C 0.10 3.38 5.44 86.30 0.47 3.85 16 6 N -0.67 -27.20 6.54 -513.88 -3.36 -30.57 16 7 C 0.10 4.65 5.33 86.30 0.46 5.11 16 8 C 0.03 1.52 1.84 -52.93 -0.10 1.42 16 9 C -0.51 -27.49 8.79 25.60 0.23 -27.27 16 10 H 0.05 2.65 7.90 -2.91 -0.02 2.63 16 11 C 0.04 2.01 5.06 84.65 0.43 2.44 16 12 N -0.89 -48.64 11.14 21.45 0.24 -48.40 16 13 Si 0.94 41.64 29.59 68.60 2.03 43.67 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 C -0.21 -9.58 9.88 30.60 0.30 -9.28 16 18 C -0.17 -7.75 9.95 30.60 0.30 -7.44 16 19 C -0.15 -4.12 9.51 30.60 0.29 -3.82 16 20 C -0.14 -3.25 9.95 30.62 0.30 -2.95 16 21 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 2.00 7.31 -2.39 -0.02 1.98 16 26 H 0.07 2.34 6.00 -2.39 -0.01 2.33 16 27 H 0.02 0.79 7.93 -2.38 -0.02 0.77 16 28 H 0.34 14.76 7.86 -89.70 -0.71 14.06 16 29 H 0.03 1.42 7.98 -2.39 -0.02 1.40 16 30 H 0.06 2.89 5.46 -2.39 -0.01 2.88 16 31 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 32 H 0.07 3.15 8.10 -2.38 -0.02 3.13 16 33 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.09 2.75 8.00 -2.39 -0.02 2.73 16 38 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 39 H 0.10 2.34 8.08 -2.39 -0.02 2.32 16 Total: -1.00 -55.58 330.03 1.74 -53.85 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.31 Total: 33.40 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 3.76 Total: -44.64 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.12 Total: -78.97 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -1.23 Total: -7.30 kcal Total: -55.58 1.74 -53.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691841292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.965 kcal (2) G-P(sol) polarization free energy of solvation -55.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds