Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.50697 * 109.88114 * 58.97106 * 3 2 1 5 5 O 1.20825 * 119.99723 * 2.87013 * 4 3 2 6 6 O 1.34222 * 120.00339 * 182.86814 * 4 3 2 7 7 C 1.54317 * 110.02493 * 297.85010 * 3 2 1 8 8 C 1.55138 * 103.02074 * 262.80470 * 7 3 2 9 9 C 1.54912 * 101.65341 * 324.34435 * 8 7 3 10 10 N 1.47448 * 109.88558 * 180.02562 * 3 2 1 11 11 C 1.46908 * 110.99362 * 242.82350 * 10 3 2 12 12 H 1.08994 * 109.47407 * 303.84926 * 11 10 3 13 13 C 1.52997 * 109.47031 * 63.85642 * 11 10 3 14 14 C 1.53009 * 109.46735 * 183.85021 * 11 10 3 15 15 C 1.50702 * 109.46635 * 77.65976 * 14 11 10 16 16 H 1.07995 * 120.00392 * 5.73416 * 15 14 11 17 17 C 1.37882 * 119.99531 * 185.73103 * 15 14 11 18 18 N 1.31513 * 119.99917 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99941 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47199 * 90.00501 * 19 17 15 21 21 H 1.48502 * 109.47102 * 210.00092 * 19 17 15 22 22 H 1.48498 * 109.47427 * 329.99879 * 19 17 15 23 23 H 1.09004 * 109.47110 * 60.00182 * 1 2 3 24 24 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47318 * 299.99505 * 1 2 3 26 26 H 1.09008 * 109.47294 * 240.00051 * 2 1 3 27 27 H 1.08995 * 109.47526 * 120.00225 * 2 1 3 28 28 H 0.96698 * 117.00448 * 184.90480 * 6 4 3 29 29 H 1.08998 * 110.70842 * 21.18596 * 7 3 2 30 30 H 1.09000 * 110.70581 * 144.24747 * 7 3 2 31 31 H 1.08996 * 110.99489 * 82.43606 * 8 7 3 32 32 H 1.09008 * 110.99253 * 206.25625 * 8 7 3 33 33 H 1.09001 * 110.37564 * 278.24626 * 9 8 7 34 34 H 1.09002 * 110.37500 * 155.90039 * 9 8 7 35 35 H 1.09001 * 109.47101 * 320.24613 * 13 11 10 36 36 H 1.08999 * 109.47216 * 80.24643 * 13 11 10 37 37 H 1.08997 * 109.47060 * 200.25072 * 13 11 10 38 38 H 1.08994 * 109.47099 * 197.65881 * 14 11 10 39 39 H 1.09004 * 109.47088 * 317.66669 * 14 11 10 40 40 H 0.96994 * 120.00312 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5220 2.1691 1.2144 5 8 0.8564 1.5799 2.0327 6 8 1.8001 3.4708 1.3870 7 6 1.5775 2.1665 -1.2819 8 6 2.8107 2.0461 -2.2155 9 6 3.9799 2.1692 -1.2069 10 7 3.5144 1.4532 -0.0006 11 6 4.0367 2.0832 1.2194 12 1 3.6252 3.0881 1.3142 13 6 3.6325 1.2496 2.4370 14 6 5.5626 2.1624 1.1393 15 6 5.9597 3.3025 0.2373 16 1 5.2052 3.9666 -0.1577 17 6 7.2864 3.4978 -0.0836 18 7 7.6330 4.4930 -0.8703 19 14 8.5913 2.3487 0.5992 20 1 8.7894 1.2129 -0.3367 21 1 9.8691 3.0887 0.7569 22 1 8.1529 1.8310 1.9202 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5089 3.8760 2.2153 29 1 0.7137 1.6644 -1.7178 30 1 1.3493 3.2117 -1.0733 31 1 2.8279 1.0785 -2.7170 32 1 2.8328 2.8602 -2.9402 33 1 4.1730 3.2168 -0.9757 34 1 4.8771 1.6962 -1.6063 35 1 2.6115 0.8902 2.3086 36 1 4.3074 0.3993 2.5354 37 1 3.6907 1.8654 3.3344 38 1 5.9706 2.3287 2.1362 39 1 5.9543 1.2279 0.7375 40 1 8.5662 4.6302 -1.0963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695711458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = -89.901892 kcal Electronic energy + Delta-G solvation = -21189.124894 eV Core-core repulsion = 18196.748916 eV Total energy + Delta-G solvation = -2992.375978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.56279 -39.51514 -37.46220 -36.31571 -34.35946 -33.71042 -30.88775 -29.76048 -28.73861 -25.34263 -24.45897 -24.00912 -22.23876 -21.27807 -20.43793 -19.11366 -18.80031 -17.85115 -17.37154 -16.47062 -16.18043 -15.97531 -14.93046 -14.80847 -14.74780 -14.46029 -14.21543 -13.80167 -13.67124 -13.54109 -13.37241 -13.02947 -12.84806 -12.64790 -12.57113 -12.30163 -12.09565 -12.04791 -11.90567 -11.79053 -11.66484 -11.46698 -11.13155 -10.98449 -10.83912 -10.67773 -9.19494 -8.21183 -6.20771 1.09815 1.35431 1.37896 1.48003 2.08279 2.38904 2.98678 3.15614 3.59675 3.69681 3.85974 4.20581 4.25364 4.32844 4.34934 4.45764 4.53567 4.63444 4.69671 4.80662 4.87991 4.89358 5.00492 5.04613 5.07880 5.16723 5.19539 5.26298 5.32468 5.35864 5.40704 5.45983 5.57963 5.68676 5.70632 6.09587 6.26112 6.36778 6.81722 6.96495 7.39695 8.92828 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.028363 B = 0.007562 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.959151 B = 3701.860687 C = 3977.018665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.085 4.085 3 C 0.101 3.899 4 C 0.489 3.511 5 O -0.530 6.530 6 O -0.513 6.513 7 C -0.126 4.126 8 C -0.122 4.122 9 C 0.048 3.952 10 N -0.500 5.500 11 C 0.063 3.937 12 H 0.066 0.934 13 C -0.170 4.170 14 C -0.001 4.001 15 C -0.507 4.507 16 H 0.054 0.946 17 C 0.014 3.986 18 N -0.945 5.945 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.257 1.257 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.418 0.582 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.018 0.982 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 -6.994 0.748 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.123 4.123 3 C 0.011 3.989 4 C 0.333 3.667 5 O -0.419 6.419 6 O -0.326 6.326 7 C -0.164 4.164 8 C -0.160 4.160 9 C -0.079 4.079 10 N -0.226 5.226 11 C -0.045 4.045 12 H 0.083 0.917 13 C -0.228 4.228 14 C -0.039 4.039 15 C -0.545 4.545 16 H 0.072 0.928 17 C -0.183 4.183 18 N -0.587 5.587 19 Si 0.759 3.241 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.181 1.181 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.280 0.720 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.648 -7.740 0.548 15.700 hybrid contribution 0.863 1.042 0.926 1.639 sum -12.785 -6.698 1.474 14.509 Atomic orbital electron populations 1.22067 0.94152 1.03012 1.02597 1.21354 0.96323 0.91470 1.03145 1.22235 0.89340 0.96332 0.91035 1.23955 0.75006 0.79962 0.87811 1.90596 1.38188 1.67630 1.45529 1.84732 1.74828 1.26090 1.46961 1.22943 0.99834 1.00624 0.93027 1.22775 0.92855 1.03242 0.97172 1.23233 0.97329 0.98311 0.88987 1.63953 1.03509 1.52095 1.03081 1.22214 0.96554 0.96628 0.89057 0.91684 1.22468 1.03041 1.00421 0.96824 1.19561 0.92564 0.95850 0.95933 1.21489 0.92863 1.12065 1.28047 0.92770 1.25726 1.00720 0.96573 0.95306 1.70026 1.17939 1.32399 1.38305 0.85901 0.78693 0.79385 0.80085 1.19720 1.21449 1.18101 0.91462 0.91118 0.92371 0.89385 0.92368 0.72006 0.87252 0.91027 0.89394 0.89973 0.92807 0.92220 0.90318 0.92443 0.92368 0.96626 0.96348 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.37 71.98 0.67 -2.77 16 2 C -0.08 -2.18 4.88 30.59 0.15 -2.03 16 3 C 0.10 2.99 0.53 3.12 0.00 2.99 16 4 C 0.49 14.74 3.65 71.23 0.26 15.00 16 5 O -0.53 -16.77 12.84 21.97 0.28 -16.49 16 6 O -0.51 -14.58 10.27 -51.34 -0.53 -15.11 16 7 C -0.13 -3.23 5.78 31.77 0.18 -3.05 16 8 C -0.12 -3.45 7.08 31.98 0.23 -3.23 16 9 C 0.05 1.88 4.94 86.78 0.43 2.30 16 10 N -0.50 -18.15 4.65 -815.89 -3.80 -21.95 16 11 C 0.06 2.51 1.67 44.92 0.08 2.58 16 12 H 0.07 2.71 4.98 -2.39 -0.01 2.70 16 13 C -0.17 -5.93 8.63 71.98 0.62 -5.31 16 14 C 0.00 -0.07 3.35 29.85 0.10 0.03 16 15 C -0.51 -27.66 7.48 25.60 0.19 -27.47 16 16 H 0.05 3.21 5.74 -2.91 -0.02 3.19 16 17 C 0.01 0.77 5.47 84.66 0.46 1.23 16 18 N -0.95 -57.46 13.96 21.45 0.30 -57.17 16 19 Si 0.93 44.51 27.36 68.60 1.88 46.39 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.26 -11.69 6.71 99.48 0.67 -11.02 16 23 H 0.07 1.21 6.23 -2.38 -0.01 1.19 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.47 5.57 -2.39 -0.01 1.45 16 26 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.06 1.66 7.26 -2.39 -0.02 1.64 16 28 H 0.42 8.14 9.10 -74.06 -0.67 7.46 16 29 H 0.11 2.15 5.93 -2.39 -0.01 2.13 16 30 H 0.07 1.91 7.46 -2.39 -0.02 1.89 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.05 2.49 4.78 -2.39 -0.01 2.48 16 34 H 0.06 2.59 7.99 -2.39 -0.02 2.57 16 35 H 0.08 2.65 3.09 -2.39 -0.01 2.64 16 36 H 0.06 1.99 7.98 -2.39 -0.02 1.97 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.02 0.74 7.47 -2.39 -0.02 0.72 16 39 H 0.02 0.88 7.25 -2.39 -0.02 0.86 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.94 292.69 1.85 -63.09 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.34 Total: 20.93 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.37 Total: -19.69 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -3.50 Total: -79.11 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.25 Total: -31.60 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -64.94 1.85 -63.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695711458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.810 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds