Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47033 * 2 1 4 4 C 1.50699 * 109.90586 * 301.71076 * 3 2 1 5 5 O 1.20826 * 120.00170 * 328.28729 * 4 3 2 6 6 O 1.34230 * 120.00092 * 148.01294 * 4 3 2 7 7 C 1.53985 * 109.91672 * 62.81541 * 3 2 1 8 8 C 1.54598 * 105.13941 * 120.77826 * 7 3 2 9 9 C 1.54937 * 102.92110 * 21.95221 * 8 7 3 10 10 N 1.47904 * 110.07772 * 180.50371 * 3 2 1 11 11 C 1.46898 * 110.99823 * 94.71145 * 10 3 2 12 12 H 1.09005 * 109.47480 * 324.86805 * 11 10 3 13 13 C 1.53000 * 109.47165 * 84.86662 * 11 10 3 14 14 C 1.53002 * 109.47144 * 204.86781 * 11 10 3 15 15 C 1.50694 * 109.47198 * 65.00068 * 14 11 10 16 16 H 1.07999 * 119.99733 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00019 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00400 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00014 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46817 * 90.00652 * 19 17 15 21 21 H 1.48498 * 109.47081 * 210.00793 * 19 17 15 22 22 H 1.48500 * 109.47016 * 330.01050 * 19 17 15 23 23 H 1.08992 * 109.47058 * 185.40238 * 1 2 3 24 24 H 1.09000 * 109.47108 * 305.40407 * 1 2 3 25 25 H 1.09003 * 109.47130 * 65.40218 * 1 2 3 26 26 H 1.08994 * 109.47180 * 240.00289 * 2 1 3 27 27 H 1.09000 * 109.47286 * 119.99233 * 2 1 3 28 28 H 0.96697 * 117.00144 * 175.54712 * 6 4 3 29 29 H 1.09003 * 110.30777 * 239.68954 * 7 3 2 30 30 H 1.08999 * 110.31250 * 1.76202 * 7 3 2 31 31 H 1.09004 * 110.72483 * 140.31486 * 8 7 3 32 32 H 1.09008 * 110.72000 * 263.41893 * 8 7 3 33 33 H 1.09004 * 110.66390 * 81.02721 * 9 8 7 34 34 H 1.08997 * 110.66368 * 203.98391 * 9 8 7 35 35 H 1.09004 * 109.47034 * 188.33344 * 13 11 10 36 36 H 1.08995 * 109.47212 * 308.33289 * 13 11 10 37 37 H 1.08999 * 109.47347 * 68.33848 * 13 11 10 38 38 H 1.08998 * 109.46914 * 185.00363 * 14 11 10 39 39 H 1.08999 * 109.46825 * 304.99701 * 14 11 10 40 40 H 0.96996 * 120.00620 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5088 2.1746 -1.2054 5 8 1.3079 1.5761 -2.2356 6 8 1.2537 3.4904 -1.1330 7 6 1.5913 2.1576 1.2878 8 6 2.9002 2.6022 1.9799 9 6 3.9182 2.6275 0.8121 10 7 3.5189 1.4583 -0.0122 11 6 4.0327 1.5805 -1.3830 12 1 3.3784 1.0388 -2.0660 13 6 4.0760 3.0570 -1.7816 14 6 5.4431 0.9917 -1.4533 15 6 5.3834 -0.4892 -1.1806 16 1 4.4344 -0.9629 -0.9769 17 6 6.5404 -1.2391 -1.1900 18 7 6.4883 -2.5316 -0.9524 19 14 8.1818 -0.4196 -1.5415 20 1 8.7871 0.0430 -0.2668 21 1 9.0913 -1.3938 -2.1965 22 1 7.9719 0.7435 -2.4405 23 1 -0.3633 -1.0230 0.0967 24 1 -0.3633 0.5954 0.8376 25 1 -0.3633 0.4278 -0.9344 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 0.9775 3.9296 -1.9490 29 1 0.9782 3.0255 1.0447 30 1 1.0372 1.4713 1.9283 31 1 2.7882 3.5951 2.4156 32 1 3.1990 1.8804 2.7401 33 1 3.8251 3.5511 0.2406 34 1 4.9352 2.5088 1.1857 35 1 4.3146 3.1402 -2.8420 36 1 3.1049 3.5135 -1.5908 37 1 4.8396 3.5692 -1.1963 38 1 5.8587 1.1617 -2.4465 39 1 6.0755 1.4733 -0.7076 40 1 7.3021 -3.0592 -0.9594 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695711464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = -78.682201 kcal Electronic energy + Delta-G solvation = -21084.376144 eV Core-core repulsion = 18092.486688 eV Total energy + Delta-G solvation = -2991.889455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27436 -38.25602 -36.11598 -34.92370 -32.85783 -32.02909 -29.17736 -28.10285 -27.62215 -23.96724 -23.19801 -22.56012 -21.42564 -19.49456 -18.97531 -17.66168 -16.63703 -16.47502 -16.12570 -15.13170 -14.82902 -14.22099 -13.88343 -13.68485 -13.20188 -13.07348 -12.94521 -12.45891 -12.30338 -12.06582 -11.77624 -11.65221 -11.44001 -11.19075 -11.08536 -10.91816 -10.83325 -10.81674 -10.65854 -10.26185 -10.11551 -9.90023 -9.70668 -9.55605 -9.02184 -8.39969 -7.88744 -5.88284 -3.82068 2.36289 3.13367 3.37393 3.44822 3.47459 4.24816 4.56602 4.69981 4.85598 5.09626 5.30556 5.37707 5.45600 5.51410 5.54404 5.64009 5.67257 5.73487 5.80993 5.86881 5.95899 5.99283 6.09801 6.23606 6.28501 6.31457 6.36482 6.44832 6.48734 6.57651 6.74265 6.78184 7.07440 7.21894 7.49136 7.66312 7.93739 8.03723 8.74010 9.22827 9.74525 11.25677 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.007668 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.550990 B = 3650.503456 C = 3848.148202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C 0.108 3.892 4 C 0.470 3.530 5 O -0.505 6.505 6 O -0.519 6.519 7 C -0.124 4.124 8 C -0.120 4.120 9 C 0.020 3.980 10 N -0.452 5.452 11 C 0.064 3.936 12 H 0.089 0.911 13 C -0.205 4.205 14 C 0.003 3.997 15 C -0.489 4.489 16 H 0.078 0.922 17 C 0.062 3.938 18 N -0.907 5.907 19 Si 0.873 3.127 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.269 1.269 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.399 0.601 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.017 0.983 39 H 0.012 0.988 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 12.856 4.011 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.132 4.132 3 C 0.017 3.983 4 C 0.310 3.690 5 O -0.390 6.390 6 O -0.332 6.332 7 C -0.162 4.162 8 C -0.158 4.158 9 C -0.108 4.108 10 N -0.177 5.177 11 C -0.043 4.043 12 H 0.107 0.893 13 C -0.263 4.263 14 C -0.034 4.034 15 C -0.527 4.527 16 H 0.097 0.903 17 C -0.137 4.137 18 N -0.548 5.548 19 Si 0.701 3.299 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.194 1.194 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.257 0.743 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.393 11.827 4.284 16.316 hybrid contribution 0.614 1.373 -1.228 1.942 sum -9.779 13.200 3.057 16.710 Atomic orbital electron populations 1.21931 0.96156 1.02105 1.01396 1.21395 0.94300 0.92506 1.05035 1.22077 0.91081 0.95315 0.89826 1.24565 0.73097 0.79889 0.91464 1.90696 1.47705 1.68012 1.32610 1.84635 1.80085 1.24937 1.43515 1.22602 0.98525 1.00213 0.94887 1.22462 0.94268 1.01147 0.97907 1.23538 1.00136 0.93028 0.94082 1.65289 1.01392 1.38622 1.12375 1.22200 1.00993 0.93153 0.87975 0.89292 1.22925 1.02104 0.99352 1.01935 1.19540 0.90215 0.97673 0.96008 1.21022 0.95539 0.90310 1.45875 0.90348 1.24985 0.98583 0.94717 0.95436 1.69905 1.27952 1.05676 1.51224 0.86898 0.84829 0.79485 0.78693 1.20569 1.21646 1.19415 0.92039 0.92848 0.92945 0.89889 0.89465 0.74272 0.90321 0.90197 0.91270 0.90527 0.92468 0.89453 0.92448 0.92007 0.92050 0.96451 0.96976 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.37 37.16 0.35 -1.78 16 2 C -0.09 -1.57 4.84 -26.73 -0.13 -1.70 16 3 C 0.11 1.74 0.56 -131.68 -0.07 1.66 16 4 C 0.47 7.40 3.37 36.00 0.12 7.52 16 5 O -0.51 -9.41 14.65 -18.75 -0.27 -9.68 16 6 O -0.52 -6.32 9.92 -39.26 -0.39 -6.71 16 7 C -0.12 -1.59 5.43 -25.38 -0.14 -1.72 16 8 C -0.12 -1.52 7.06 -24.87 -0.18 -1.69 16 9 C 0.02 0.31 5.77 -1.90 -0.01 0.29 16 10 N -0.45 -8.46 4.50 -208.46 -0.94 -9.40 16 11 C 0.06 1.33 1.82 -67.71 -0.12 1.20 16 12 H 0.09 2.03 5.97 -51.93 -0.31 1.72 16 13 C -0.20 -3.46 7.34 37.16 0.27 -3.18 16 14 C 0.00 0.08 3.66 -27.89 -0.10 -0.02 16 15 C -0.49 -14.05 9.39 -34.44 -0.32 -14.37 16 16 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 17 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 19 Si 0.87 22.19 27.47 -169.99 -4.67 17.52 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 25 H 0.05 0.75 6.78 -51.93 -0.35 0.40 16 26 H 0.08 1.65 7.94 -51.93 -0.41 1.24 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.40 3.29 9.10 45.56 0.41 3.70 16 29 H 0.08 0.92 6.71 -51.93 -0.35 0.57 16 30 H 0.08 0.92 6.65 -51.93 -0.35 0.57 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.06 0.84 5.18 -51.93 -0.27 0.57 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.93 3.65 -51.93 -0.19 0.74 16 37 H 0.06 0.98 6.78 -51.93 -0.35 0.63 16 38 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.29 7.52 -51.93 -0.39 -0.10 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -32.99 300.52 -6.79 -39.78 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.39 Total: 3.69 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.43 Total: -12.05 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.16 Total: -37.08 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.66 Total: -16.39 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.99 -6.79 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695711464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.904 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds