Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47033 * 2 1 4 4 C 1.50699 * 109.90586 * 301.71076 * 3 2 1 5 5 O 1.20826 * 120.00170 * 328.28729 * 4 3 2 6 6 O 1.34230 * 120.00092 * 148.01294 * 4 3 2 7 7 C 1.53985 * 109.91672 * 62.81541 * 3 2 1 8 8 C 1.54598 * 105.13941 * 120.77826 * 7 3 2 9 9 C 1.54937 * 102.92110 * 21.95221 * 8 7 3 10 10 N 1.47904 * 110.07772 * 180.50371 * 3 2 1 11 11 C 1.46898 * 110.99823 * 94.71145 * 10 3 2 12 12 H 1.09005 * 109.47480 * 324.86805 * 11 10 3 13 13 C 1.53000 * 109.47165 * 84.86662 * 11 10 3 14 14 C 1.53002 * 109.47144 * 204.86781 * 11 10 3 15 15 C 1.50694 * 109.47198 * 65.00068 * 14 11 10 16 16 H 1.07999 * 119.99733 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00019 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00400 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00014 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46817 * 90.00652 * 19 17 15 21 21 H 1.48498 * 109.47081 * 210.00793 * 19 17 15 22 22 H 1.48500 * 109.47016 * 330.01050 * 19 17 15 23 23 H 1.08992 * 109.47058 * 185.40238 * 1 2 3 24 24 H 1.09000 * 109.47108 * 305.40407 * 1 2 3 25 25 H 1.09003 * 109.47130 * 65.40218 * 1 2 3 26 26 H 1.08994 * 109.47180 * 240.00289 * 2 1 3 27 27 H 1.09000 * 109.47286 * 119.99233 * 2 1 3 28 28 H 0.96697 * 117.00144 * 175.54712 * 6 4 3 29 29 H 1.09003 * 110.30777 * 239.68954 * 7 3 2 30 30 H 1.08999 * 110.31250 * 1.76202 * 7 3 2 31 31 H 1.09004 * 110.72483 * 140.31486 * 8 7 3 32 32 H 1.09008 * 110.72000 * 263.41893 * 8 7 3 33 33 H 1.09004 * 110.66390 * 81.02721 * 9 8 7 34 34 H 1.08997 * 110.66368 * 203.98391 * 9 8 7 35 35 H 1.09004 * 109.47034 * 188.33344 * 13 11 10 36 36 H 1.08995 * 109.47212 * 308.33289 * 13 11 10 37 37 H 1.08999 * 109.47347 * 68.33848 * 13 11 10 38 38 H 1.08998 * 109.46914 * 185.00363 * 14 11 10 39 39 H 1.08999 * 109.46825 * 304.99701 * 14 11 10 40 40 H 0.96996 * 120.00620 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5088 2.1746 -1.2054 5 8 1.3079 1.5761 -2.2356 6 8 1.2537 3.4904 -1.1330 7 6 1.5913 2.1576 1.2878 8 6 2.9002 2.6022 1.9799 9 6 3.9182 2.6275 0.8121 10 7 3.5189 1.4583 -0.0122 11 6 4.0327 1.5805 -1.3830 12 1 3.3784 1.0388 -2.0660 13 6 4.0760 3.0570 -1.7816 14 6 5.4431 0.9917 -1.4533 15 6 5.3834 -0.4892 -1.1806 16 1 4.4344 -0.9629 -0.9769 17 6 6.5404 -1.2391 -1.1900 18 7 6.4883 -2.5316 -0.9524 19 14 8.1818 -0.4196 -1.5415 20 1 8.7871 0.0430 -0.2668 21 1 9.0913 -1.3938 -2.1965 22 1 7.9719 0.7435 -2.4405 23 1 -0.3633 -1.0230 0.0967 24 1 -0.3633 0.5954 0.8376 25 1 -0.3633 0.4278 -0.9344 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 0.9775 3.9296 -1.9490 29 1 0.9782 3.0255 1.0447 30 1 1.0372 1.4713 1.9283 31 1 2.7882 3.5951 2.4156 32 1 3.1990 1.8804 2.7401 33 1 3.8251 3.5511 0.2406 34 1 4.9352 2.5088 1.1857 35 1 4.3146 3.1402 -2.8420 36 1 3.1049 3.5135 -1.5908 37 1 4.8396 3.5692 -1.1963 38 1 5.8587 1.1617 -2.4465 39 1 6.0755 1.4733 -0.7076 40 1 7.3021 -3.0592 -0.9594 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695711464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = -102.635388 kcal Electronic energy + Delta-G solvation = -21085.414832 eV Core-core repulsion = 18092.486688 eV Total energy + Delta-G solvation = -2992.928144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.53154 -39.51813 -37.28009 -36.45099 -34.61854 -33.66622 -30.76637 -29.59776 -28.95119 -25.45987 -24.46771 -24.14015 -22.81223 -20.80521 -20.34063 -18.87268 -18.79727 -17.83774 -17.46183 -16.40816 -16.17272 -16.00732 -15.30744 -14.91276 -14.83545 -14.35417 -14.25622 -14.13947 -13.81754 -13.66754 -13.24159 -12.99794 -12.68891 -12.61427 -12.54351 -12.35069 -12.14299 -12.07357 -11.95136 -11.78914 -11.66918 -11.42560 -11.35402 -11.20880 -11.08295 -10.68390 -9.25306 -8.18116 -6.17294 1.12003 1.34924 1.37209 1.47930 2.00687 2.40771 2.93036 3.18279 3.53203 3.68473 3.94592 4.08188 4.15364 4.27627 4.31410 4.37405 4.41207 4.47689 4.64786 4.68609 4.78421 4.88195 4.97438 4.99705 5.05454 5.06559 5.10959 5.14682 5.20639 5.26402 5.33077 5.38936 5.43523 5.59084 5.71863 6.08692 6.16957 6.47403 6.89147 6.94757 7.42678 8.99280 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.007668 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.550990 B = 3650.503456 C = 3848.148202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C 0.102 3.898 4 C 0.478 3.522 5 O -0.541 6.541 6 O -0.503 6.503 7 C -0.116 4.116 8 C -0.111 4.111 9 C 0.014 3.986 10 N -0.486 5.486 11 C 0.070 3.930 12 H 0.055 0.945 13 C -0.196 4.196 14 C 0.007 3.993 15 C -0.491 4.491 16 H 0.034 0.966 17 C -0.002 4.002 18 N -0.956 5.956 19 Si 0.945 3.055 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.252 1.252 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.421 0.579 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.014 0.986 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 16.180 4.989 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C 0.011 3.989 4 C 0.319 3.681 5 O -0.429 6.429 6 O -0.317 6.317 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.113 4.113 10 N -0.210 5.210 11 C -0.038 4.038 12 H 0.074 0.926 13 C -0.254 4.254 14 C -0.031 4.031 15 C -0.529 4.529 16 H 0.052 0.948 17 C -0.197 4.197 18 N -0.598 5.598 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.175 1.175 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.282 0.718 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.694 15.199 5.266 19.316 hybrid contribution 0.615 0.286 -1.528 1.672 sum -10.079 15.485 3.738 18.851 Atomic orbital electron populations 1.21855 0.93406 1.03181 1.02077 1.21343 0.96681 0.93182 1.02080 1.22084 0.89609 0.95158 0.92070 1.24355 0.72368 0.80784 0.90551 1.90697 1.49292 1.69082 1.33827 1.84547 1.79385 1.22872 1.44856 1.22632 0.98952 1.00814 0.93018 1.22465 0.92901 1.02958 0.96602 1.23650 1.00423 0.92322 0.94870 1.65098 1.03445 1.41008 1.11495 1.21871 0.97837 0.95036 0.89044 0.92630 1.22829 1.03866 0.96525 1.02156 1.19460 0.93192 0.94798 0.95649 1.21238 0.93810 0.92856 1.45003 0.94806 1.25931 1.03068 0.95265 0.95419 1.70077 1.29194 1.07548 1.53031 0.85743 0.79283 0.78812 0.79236 1.19262 1.21414 1.17541 0.91361 0.89808 0.93908 0.94915 0.90354 0.71785 0.88280 0.88732 0.87890 0.91023 0.90951 0.90713 0.92348 0.89874 0.90661 0.96740 0.96221 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.37 71.98 0.67 -3.22 16 2 C -0.09 -3.29 4.84 30.60 0.15 -3.14 16 3 C 0.10 3.20 0.56 2.92 0.00 3.20 16 4 C 0.48 14.44 3.37 71.24 0.24 14.68 16 5 O -0.54 -20.37 14.65 21.96 0.32 -20.05 16 6 O -0.50 -10.43 9.92 -51.42 -0.51 -10.94 16 7 C -0.12 -2.59 5.43 31.47 0.17 -2.42 16 8 C -0.11 -2.45 7.06 31.80 0.22 -2.22 16 9 C 0.01 0.41 5.77 86.65 0.50 0.91 16 10 N -0.49 -18.15 4.50 -813.42 -3.66 -21.81 16 11 C 0.07 2.92 1.82 44.92 0.08 3.00 16 12 H 0.06 2.66 5.97 -2.38 -0.01 2.65 16 13 C -0.20 -6.20 7.34 71.98 0.53 -5.67 16 14 C 0.01 0.33 3.66 29.85 0.11 0.44 16 15 C -0.49 -29.41 9.39 25.60 0.24 -29.17 16 16 H 0.03 2.27 7.99 -2.91 -0.02 2.24 16 17 C 0.00 -0.12 5.47 84.66 0.46 0.35 16 18 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 19 Si 0.94 46.13 27.47 68.60 1.88 48.02 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.69 6.56 -2.39 -0.02 1.68 16 25 H 0.04 1.21 6.78 -2.39 -0.02 1.20 16 26 H 0.03 1.43 7.94 -2.39 -0.02 1.41 16 27 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.42 5.32 9.10 -74.06 -0.67 4.65 16 29 H 0.10 1.84 6.71 -2.39 -0.02 1.82 16 30 H 0.09 1.84 6.65 -2.39 -0.02 1.83 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 1.86 5.18 -2.39 -0.01 1.85 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.24 3.65 -2.39 -0.01 2.23 16 37 H 0.07 2.18 6.78 -2.39 -0.02 2.16 16 38 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 39 H 0.02 0.93 7.52 -2.39 -0.02 0.91 16 40 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -75.62 300.52 2.03 -73.60 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.31 Total: 16.46 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.38 Total: -23.27 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.36 Total: -83.81 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.19 Total: -30.99 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.02 kcal Total: -75.62 2.03 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695711464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.038 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds