Wall clock time and date at job start Mon Mar 30 2020 06:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46847 * 2 1 4 4 C 1.52997 * 109.47364 * 119.99840 * 2 1 3 5 5 C 1.50701 * 109.47239 * 188.48126 * 4 2 1 6 6 H 1.08000 * 120.00298 * 3.80049 * 5 4 2 7 7 C 1.37881 * 120.00242 * 183.80054 * 5 4 2 8 8 N 1.31513 * 119.99436 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46958 * 90.00414 * 9 7 5 11 11 H 1.48501 * 109.47114 * 210.00389 * 9 7 5 12 12 H 1.48498 * 109.46885 * 330.00128 * 9 7 5 13 13 N 1.46900 * 109.47547 * 240.00090 * 2 1 3 14 14 C 1.46846 * 110.98878 * 291.53347 * 13 2 1 15 15 C 1.53042 * 109.51394 * 174.14546 * 14 13 2 16 16 C 1.53124 * 109.27599 * 59.18416 * 15 14 13 17 17 C 1.53116 * 109.16223 * 302.34694 * 16 15 14 18 18 C 1.46842 * 111.00512 * 167.32611 * 13 2 1 19 19 H 1.09005 * 109.46290 * 65.83442 * 18 13 2 20 20 C 1.53007 * 109.46228 * 305.85791 * 18 13 2 21 21 C 1.50703 * 109.46926 * 173.15381 * 20 18 13 22 22 O 1.20830 * 120.00160 * 1.24102 * 21 20 18 23 23 O 1.34228 * 119.99935 * 181.23749 * 21 20 18 24 24 H 1.09003 * 109.47332 * 65.81315 * 1 2 3 25 25 H 1.09000 * 109.47018 * 185.81371 * 1 2 3 26 26 H 1.08994 * 109.47023 * 305.80982 * 1 2 3 27 27 H 1.09001 * 109.47120 * 308.48082 * 4 2 1 28 28 H 1.08997 * 109.47112 * 68.48324 * 4 2 1 29 29 H 0.97010 * 119.99529 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.46367 * 54.13622 * 14 13 2 31 31 H 1.08991 * 109.47341 * 294.16179 * 14 13 2 32 32 H 1.09002 * 109.50521 * 299.24522 * 15 14 13 33 33 H 1.08997 * 109.50240 * 179.12388 * 15 14 13 34 34 H 1.09001 * 109.52047 * 182.43880 * 16 15 14 35 35 H 1.08999 * 109.52079 * 62.25159 * 16 15 14 36 36 H 1.09011 * 109.49908 * 297.71354 * 17 16 15 37 37 H 1.09002 * 109.53878 * 177.61838 * 17 16 15 38 38 H 1.08999 * 109.46934 * 293.15374 * 20 18 13 39 39 H 1.08998 * 109.46878 * 53.15621 * 20 18 13 40 40 H 0.96697 * 116.99857 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5324 -0.5423 1.3584 6 1 4.0553 0.0792 0.6466 7 6 4.2303 -1.1720 2.3672 8 7 3.5935 -1.9291 3.2337 9 14 6.0802 -0.9508 2.5021 10 1 6.3770 0.2200 3.3661 11 1 6.6824 -2.1707 3.0975 12 1 6.6517 -0.7260 1.1501 13 7 2.0197 -0.6925 -1.1994 14 6 1.7207 -2.1288 -1.1365 15 6 2.1121 -2.7909 -2.4596 16 6 3.6065 -2.5722 -2.7117 17 6 3.8994 -1.0693 -2.7240 18 6 3.4561 -0.4572 -1.3934 19 1 4.0131 -0.9186 -0.5779 20 6 3.7286 1.0484 -1.4089 21 6 5.2159 1.2894 -1.4388 22 8 5.9792 0.3532 -1.4695 23 8 5.6927 2.5441 -1.4314 24 1 -0.3634 0.4211 -0.9375 25 1 -0.3633 -1.0224 0.1041 26 1 -0.3633 0.6013 0.8334 27 1 1.5582 -0.3023 2.1327 28 1 1.8058 -1.7832 1.1767 29 1 4.0846 -2.3725 3.9432 30 1 0.6543 -2.2703 -0.9611 31 1 2.2858 -2.5823 -0.3224 32 1 1.5372 -2.3473 -3.2726 33 1 1.9044 -3.8596 -2.4071 34 1 3.8807 -3.0047 -3.6739 35 1 4.1831 -3.0492 -1.9192 36 1 3.3526 -0.5987 -3.5412 37 1 4.9687 -0.9075 -2.8609 38 1 3.2708 1.4913 -2.2934 39 1 3.3047 1.5035 -0.5138 40 1 6.6538 2.6486 -1.4511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695715034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:46 Heat of formation + Delta-G solvation = -93.345088 kcal Electronic energy + Delta-G solvation = -21061.336983 eV Core-core repulsion = 18068.811697 eV Total energy + Delta-G solvation = -2992.525286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20025 -38.75713 -35.78097 -34.60839 -32.47174 -32.32109 -29.39804 -27.62926 -27.44953 -23.80254 -23.00697 -22.42864 -20.28710 -19.72399 -18.33063 -17.69920 -16.50858 -16.29565 -15.52336 -15.19819 -14.57981 -13.99226 -13.71972 -13.54548 -13.41792 -12.90038 -12.56920 -12.21922 -12.01819 -11.87409 -11.59277 -11.46359 -11.22796 -11.09598 -10.98836 -10.69751 -10.58712 -10.47235 -10.16569 -10.07935 -9.90885 -9.71209 -9.49373 -9.36048 -8.94418 -8.37707 -7.17540 -6.04918 -4.04885 2.65940 3.29620 3.37421 3.41470 3.48647 4.44591 4.77444 5.21278 5.30685 5.35400 5.45553 5.61491 5.66414 5.81179 5.88545 6.00452 6.08049 6.14789 6.21312 6.23808 6.31701 6.43571 6.47057 6.55018 6.63272 6.64883 6.74646 6.76857 6.86390 6.91039 6.97303 7.25334 7.52507 7.62363 7.87144 8.02052 8.09770 8.29355 8.34286 8.97896 9.57451 11.05530 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.011880 C = 0.008868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.729242 B = 2356.360475 C = 3156.608417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.869 3.131 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.520 5.520 14 C 0.053 3.947 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.072 3.928 19 H 0.114 0.886 20 C -0.109 4.109 21 C 0.478 3.522 22 O -0.506 6.506 23 O -0.524 6.524 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.015 0.985 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 4.013 -10.596 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.040 4.040 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.565 4.565 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.697 3.303 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.245 5.245 14 C -0.074 4.074 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.036 4.036 19 H 0.131 0.869 20 C -0.146 4.146 21 C 0.320 3.680 22 O -0.393 6.393 23 O -0.336 6.336 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.763 3.770 -10.852 11.623 hybrid contribution 2.130 -0.178 1.014 2.366 sum 0.367 3.593 -9.839 10.481 Atomic orbital electron populations 1.21803 0.96359 1.01009 1.00308 1.21929 0.93369 0.98231 0.90443 0.91046 1.19782 0.95914 0.96628 0.92294 1.21472 0.92873 1.29614 1.12513 0.91410 1.24948 0.97875 0.95235 0.95679 1.69965 1.35625 1.31141 1.16093 0.86891 0.86582 0.77659 0.79205 1.20825 1.21229 1.18437 1.62301 1.14223 1.10127 1.37837 1.22030 1.00280 0.88596 0.96544 1.21581 0.96171 0.99144 0.98238 1.21497 0.96515 0.96660 1.00704 1.21751 1.01011 0.95416 0.97119 1.21974 0.90630 0.91644 0.99342 0.86920 1.21559 0.87159 1.00249 1.05683 1.23668 0.93126 0.79691 0.71487 1.90702 1.59977 1.43637 1.44975 1.84551 1.30598 1.32267 1.86190 0.93300 0.93373 0.93138 0.96700 0.95405 0.93063 0.91644 0.92676 0.92131 0.92562 0.92989 0.92038 0.92830 0.91118 0.88355 0.86507 0.74012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.03 37.16 0.34 -1.96 16 2 C 0.07 1.32 2.36 -67.72 -0.16 1.16 16 3 H 0.07 1.37 5.38 -51.92 -0.28 1.09 16 4 C -0.01 -0.20 4.08 -27.88 -0.11 -0.31 16 5 C -0.53 -13.85 6.88 -34.44 -0.24 -14.09 16 6 H 0.07 1.71 3.52 -52.49 -0.18 1.52 16 7 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.87 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.52 -9.58 4.42 -218.76 -0.97 -10.55 16 14 C 0.05 0.98 4.49 -3.83 -0.02 0.96 16 15 C -0.11 -1.77 6.09 -26.65 -0.16 -1.93 16 16 C -0.12 -1.89 6.00 -26.61 -0.16 -2.05 16 17 C -0.12 -1.96 5.12 -26.65 -0.14 -2.10 16 18 C 0.07 1.37 0.86 -67.72 -0.06 1.31 16 19 H 0.11 2.64 4.53 -51.93 -0.24 2.41 16 20 C -0.11 -1.85 4.22 -27.88 -0.12 -1.97 16 21 C 0.48 8.35 7.72 36.01 0.28 8.63 16 22 O -0.51 -10.37 14.79 -18.75 -0.28 -10.64 16 23 O -0.52 -7.39 13.42 -39.25 -0.53 -7.92 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.81 6.78 -51.93 -0.35 0.45 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.01 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.03 0.73 5.94 -51.93 -0.31 0.42 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.13 6.45 -51.93 -0.33 0.80 16 31 H 0.06 1.20 6.39 -51.93 -0.33 0.87 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 37 H 0.07 1.26 6.09 -51.93 -0.32 0.95 16 38 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.12 2.08 5.03 -51.93 -0.26 1.82 16 40 H 0.40 3.93 9.10 45.56 0.41 4.35 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -30.60 299.87 -7.31 -37.91 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.13 Total: 5.99 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.65 Total: -10.63 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.23 Total: -35.98 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.80 Total: -18.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.60 -7.31 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695715034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.435 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds