Wall clock time and date at job start Mon Mar 30 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46838 * 2 1 4 4 H 1.09002 * 109.47361 * 55.68878 * 3 2 1 5 5 C 1.50705 * 109.47168 * 175.69089 * 3 2 1 6 6 H 1.07994 * 120.00156 * 120.00134 * 5 3 2 7 7 C 1.37878 * 119.99952 * 299.99854 * 5 3 2 8 8 N 1.31522 * 119.99902 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00093 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47244 * 60.00203 * 9 7 5 11 11 H 1.48502 * 109.47352 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47308 * 300.00308 * 9 7 5 13 13 N 1.46905 * 109.47201 * 295.68914 * 3 2 1 14 14 C 1.45465 * 111.00216 * 173.87421 * 13 3 2 15 15 C 1.50818 * 113.29346 * 220.61840 * 14 13 3 16 16 C 1.50716 * 114.97929 * 273.04886 * 15 14 13 17 17 H 1.08996 * 114.64556 * 194.16619 * 16 15 14 18 18 C 1.55968 * 99.96026 * 317.55847 * 16 15 14 19 19 C 1.51917 * 111.98374 * 88.25033 * 18 16 15 20 20 C 1.50315 * 113.34748 * 0.97028 * 19 18 16 21 21 H 1.09006 * 107.45940 * 134.63321 * 20 19 18 22 22 C 1.51000 * 120.65042 * 257.62569 * 20 19 18 23 23 S 1.83611 * 107.02616 * 66.07591 * 16 15 14 24 24 H 1.09007 * 109.46479 * 175.28201 * 1 2 3 25 25 H 1.08994 * 109.47221 * 295.28364 * 1 2 3 26 26 H 1.09003 * 109.47311 * 55.28775 * 1 2 3 27 27 H 1.08996 * 109.47562 * 119.99587 * 2 1 3 28 28 H 1.09002 * 109.47890 * 240.00396 * 2 1 3 29 29 H 0.96994 * 119.99985 * 179.97438 * 8 7 5 30 30 H 1.09007 * 108.71400 * 341.59926 * 14 13 3 31 31 H 1.08999 * 108.72178 * 99.62721 * 14 13 3 32 32 H 1.09005 * 108.38075 * 34.46956 * 15 14 13 33 33 H 1.08993 * 108.38097 * 151.79522 * 15 14 13 34 34 H 1.08999 * 108.99151 * 208.91641 * 18 16 15 35 35 H 1.09002 * 108.98648 * 327.59448 * 18 16 15 36 36 H 1.09002 * 108.71293 * 121.98346 * 19 18 16 37 37 H 1.08992 * 108.72388 * 240.11613 * 19 18 16 38 38 H 1.08998 * 108.69423 * 302.92895 * 22 20 19 39 39 H 1.08999 * 108.69185 * 184.96733 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6149 1.9782 0.8488 5 6 3.5432 1.4440 0.1068 6 1 4.1396 1.8917 -0.6743 7 6 4.1571 0.8737 1.2017 8 7 3.4307 0.3281 2.1528 9 14 6.0203 0.8748 1.3337 10 1 6.5158 2.2747 1.3334 11 1 6.4276 0.2054 2.5952 12 1 6.5990 0.1447 0.1773 13 7 1.6371 2.1044 -1.2481 14 6 1.9792 3.5180 -1.2226 15 6 0.9105 4.4011 -1.8164 16 6 1.0022 4.5961 -3.3081 17 1 0.3931 5.4114 -3.6982 18 6 2.5415 4.7965 -3.4598 19 6 3.2714 3.4770 -3.6440 20 6 2.3541 2.2863 -3.6622 21 1 2.6603 1.6502 -4.4928 22 6 2.2215 1.3980 -2.4483 23 16 0.6759 2.9646 -4.0846 24 1 -0.3632 -1.0243 -0.0845 25 1 -0.3633 0.4389 0.9292 26 1 -0.3634 0.5852 -0.8448 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.8626 -0.0735 2.9229 30 1 2.1467 3.8187 -0.1883 31 1 2.9039 3.6642 -1.7808 32 1 -0.0621 3.9661 -1.5858 33 1 0.9693 5.3796 -1.3400 34 1 2.7329 5.4315 -4.3248 35 1 2.9243 5.2919 -2.5675 36 1 3.8208 3.5096 -4.5849 37 1 3.9837 3.3543 -2.8282 38 1 3.2084 1.0184 -2.1837 39 1 1.5817 0.5529 -2.7020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704291087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:48 Heat of formation + Delta-G solvation = 6.588230 kcal Electronic energy + Delta-G solvation = -18562.438602 eV Core-core repulsion = 16016.999621 eV Total energy + Delta-G solvation = -2545.438981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64408 -37.40629 -34.35519 -33.94385 -32.82865 -29.46974 -28.11906 -27.17917 -24.82067 -23.51856 -21.98719 -21.24355 -20.15466 -18.19618 -17.77527 -17.14151 -16.92144 -16.15549 -15.29551 -15.02507 -14.96046 -14.63420 -14.30254 -14.16620 -13.43629 -13.27876 -13.12987 -12.91815 -12.76906 -12.67862 -12.46484 -12.34424 -12.20944 -11.90432 -11.75530 -11.57930 -11.53741 -11.24836 -10.93038 -10.84716 -10.59238 -10.39539 -8.73741 -8.42708 -7.96581 -6.22549 1.07597 1.38901 1.40214 1.42629 1.46607 2.41163 3.17797 3.33927 3.46801 3.73288 4.02201 4.11742 4.23007 4.30515 4.40974 4.52340 4.62997 4.70739 4.76857 4.84572 4.93239 4.98046 5.00349 5.06036 5.09468 5.13691 5.21306 5.27032 5.29153 5.43033 5.50528 5.57552 5.66968 5.83288 6.06615 6.24042 6.46707 6.75648 7.00910 7.48371 8.94657 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.008345 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.893634 B = 3354.451558 C = 3897.362787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.226 3.774 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.523 5.523 14 C 0.042 3.958 15 C -0.109 4.109 16 C -0.018 4.018 17 H 0.145 0.855 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.014 4.014 21 H 0.103 0.897 22 C 0.075 3.925 23 S -0.340 6.340 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 7.866 -11.025 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.118 3.882 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.248 5.248 14 C -0.087 4.087 15 C -0.148 4.148 16 C -0.146 4.146 17 H 0.163 0.837 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.142 4.142 21 H 0.121 0.879 22 C -0.053 4.053 23 S -0.113 6.113 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.693 7.257 -11.492 13.856 hybrid contribution 2.685 0.010 1.374 3.016 sum -0.008 7.268 -10.118 12.457 Atomic orbital electron populations 1.21572 0.96682 0.99706 1.00431 1.21422 0.94183 0.98564 1.00123 1.19089 0.91693 0.91192 0.86193 0.98159 1.21959 0.93795 1.37299 1.05346 0.92873 1.25626 1.01628 0.95060 0.95628 1.70005 1.36352 1.38818 1.09970 0.85836 0.81678 0.78230 0.77236 1.19841 1.21377 1.19850 1.62609 1.58585 1.01551 1.02050 1.21669 0.98189 0.89173 0.99636 1.21095 1.00062 0.99465 0.94228 1.23951 0.99084 0.94738 0.96870 0.83691 1.22511 0.92036 0.97227 1.03880 1.21223 0.98324 0.92240 1.03596 1.23065 0.91433 0.99405 1.00321 0.87853 1.22254 0.98240 0.95608 0.89217 1.88111 1.27707 1.19155 1.76336 0.93826 0.95044 0.92555 0.92073 0.95255 0.93067 0.94513 0.91383 0.92893 0.90273 0.89260 0.90012 0.88637 0.91263 0.93983 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.85 71.98 0.71 -4.58 16 2 C -0.10 -5.02 5.09 30.59 0.16 -4.87 16 3 C 0.23 11.09 1.54 44.17 0.07 11.16 16 4 H 0.00 0.03 7.90 -2.39 -0.02 0.01 16 5 C -0.54 -28.29 6.88 25.60 0.18 -28.12 16 6 H 0.05 2.70 6.79 -2.91 -0.02 2.68 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -51.58 11.29 21.45 0.24 -51.34 16 9 Si 0.94 42.38 29.54 68.60 2.03 44.40 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.52 -21.46 3.80 -875.71 -3.33 -24.79 16 14 C 0.04 1.52 3.95 85.86 0.34 1.86 16 15 C -0.11 -3.18 4.46 29.14 0.13 -3.05 16 16 C -0.02 -0.45 4.86 30.88 0.15 -0.30 16 17 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 18 C -0.12 -2.54 5.28 31.27 0.16 -2.37 16 19 C -0.12 -2.87 5.06 29.37 0.15 -2.72 16 20 C -0.01 -0.41 2.91 29.08 0.08 -0.33 16 21 H 0.10 2.79 8.13 -2.38 -0.02 2.77 16 22 C 0.08 2.82 4.05 84.84 0.34 3.17 16 23 S -0.34 -10.33 21.94 -56.49 -1.24 -11.57 16 24 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 2.31 7.60 -2.39 -0.02 2.29 16 27 H 0.06 3.32 5.97 -2.39 -0.01 3.30 16 28 H 0.03 1.38 6.75 -2.39 -0.02 1.36 16 29 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.04 1.52 7.37 -2.38 -0.02 1.50 16 31 H 0.07 2.33 2.55 -2.39 -0.01 2.32 16 32 H 0.05 1.77 8.07 -2.38 -0.02 1.75 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.77 6.65 -2.39 -0.02 1.75 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.97 6.61 -2.39 -0.02 1.95 16 38 H 0.04 1.76 6.10 -2.39 -0.01 1.74 16 39 H 0.06 2.35 7.59 -2.39 -0.02 2.33 16 Total: -1.00 -58.09 292.37 1.64 -56.45 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.02 Total: 15.45 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 2.92 Total: -28.60 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -3.09 Total: -76.13 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.24 Total: -11.57 kcal Total: -58.09 1.64 -56.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704291087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.043 kcal (2) G-P(sol) polarization free energy of solvation -58.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds