Wall clock time and date at job start Mon Mar 30 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99727 * 2 1 4 4 H 1.48504 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47253 * 299.99637 * 3 2 1 6 6 H 1.48504 * 109.47112 * 60.00249 * 3 2 1 7 7 C 1.37876 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00204 * 173.06065 * 7 2 1 9 9 C 1.50701 * 119.99779 * 353.06898 * 7 2 1 10 10 C 1.53001 * 115.55170 * 84.96141 * 9 7 2 11 11 N 1.46903 * 109.47137 * 65.16969 * 10 9 7 12 12 C 1.46903 * 110.99918 * 174.70666 * 11 10 9 13 13 C 1.53002 * 109.47101 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47241 * 179.97438 * 13 12 11 15 15 H 1.09009 * 109.95809 * 54.79318 * 14 13 12 16 16 C 1.54016 * 109.97781 * 175.97187 * 14 13 12 17 17 C 1.54272 * 108.84231 * 166.51927 * 16 14 13 18 18 S 1.83098 * 104.75134 * 332.19812 * 17 16 14 19 19 C 1.55134 * 109.97625 * 293.54822 * 14 13 12 20 20 C 1.52997 * 117.49921 * 230.62861 * 9 7 2 21 21 C 1.52997 * 117.49937 * 299.29181 * 9 7 2 22 22 H 0.96996 * 120.00415 * 5.03392 * 1 2 3 23 23 H 1.09004 * 109.47041 * 305.16914 * 10 9 7 24 24 H 1.08998 * 109.47576 * 185.17016 * 10 9 7 25 25 H 1.00905 * 110.99438 * 298.65551 * 11 10 9 26 26 H 1.08996 * 109.47374 * 59.99840 * 12 11 10 27 27 H 1.08998 * 109.46505 * 299.99375 * 12 11 10 28 28 H 1.09004 * 109.46774 * 59.99616 * 13 12 11 29 29 H 1.09003 * 109.46656 * 299.99802 * 13 12 11 30 30 H 1.09001 * 109.57502 * 46.66975 * 16 14 13 31 31 H 1.08999 * 109.72882 * 286.45978 * 16 14 13 32 32 H 1.08996 * 110.40253 * 213.35317 * 17 16 14 33 33 H 1.08994 * 110.40337 * 91.04652 * 17 16 14 34 34 H 1.08998 * 110.85890 * 80.34320 * 19 14 13 35 35 H 1.08995 * 110.85716 * 316.69927 * 19 14 13 36 36 H 1.08996 * 117.50116 * 215.00430 * 20 9 7 37 37 H 1.09003 * 117.49883 * 0.02767 * 20 9 7 38 38 H 1.09001 * 117.49813 * 359.97438 * 21 9 7 39 39 H 1.08999 * 117.50498 * 144.97261 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0786 -1.1974 -0.1125 9 6 1.2594 -2.4943 0.1586 10 6 0.6847 -3.0864 -1.1298 11 7 1.7841 -3.4624 -2.0288 12 6 1.2756 -4.1496 -3.2235 13 6 2.4469 -4.5240 -4.1338 14 6 1.9174 -5.2402 -5.3778 15 1 1.1660 -4.6233 -5.8708 16 6 3.0759 -5.5330 -6.3495 17 6 2.5906 -6.5374 -7.4152 18 16 1.2748 -7.5009 -6.5828 19 6 1.3025 -6.6080 -4.9804 20 6 1.7625 -3.4721 1.2224 21 6 0.4608 -2.6987 1.4475 22 1 -0.4850 0.8367 -0.0737 23 1 0.0520 -2.3460 -1.6194 24 1 0.0923 -3.9697 -0.8912 25 1 2.3354 -2.6563 -2.2825 26 1 0.5952 -3.4889 -3.7607 27 1 0.7443 -5.0531 -2.9243 28 1 3.1277 -5.1845 -3.5968 29 1 2.9779 -3.6202 -4.4329 30 1 3.9147 -5.9598 -5.7997 31 1 3.3918 -4.6093 -6.8344 32 1 3.4067 -7.1928 -7.7193 33 1 2.1863 -6.0095 -8.2788 34 1 0.2930 -6.4807 -4.5895 35 1 1.9367 -7.1238 -4.2596 36 1 1.6842 -4.5371 1.0044 37 1 2.6323 -3.1746 1.8083 38 1 0.4748 -1.8928 2.1814 39 1 -0.4741 -3.2546 1.3776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704933356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:00 Heat of formation + Delta-G solvation = 1.448744 kcal Electronic energy + Delta-G solvation = -16758.103763 eV Core-core repulsion = 14212.441917 eV Total energy + Delta-G solvation = -2545.661846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.78414 -36.72888 -34.29694 -31.92172 -30.89298 -28.16673 -25.83044 -25.10033 -23.46050 -21.45531 -20.88552 -20.27022 -18.99017 -16.70368 -16.17214 -15.86011 -15.07442 -14.62656 -14.40517 -14.04587 -13.88394 -13.72457 -13.15514 -12.77787 -12.55149 -12.16163 -11.96945 -11.73464 -11.50980 -11.24357 -11.03108 -10.98446 -10.87560 -10.67125 -10.60826 -10.41478 -10.11388 -10.00899 -9.39708 -8.74072 -8.43070 -8.06155 -7.85476 -7.50122 -6.03256 -4.09325 1.68742 2.23186 3.25546 3.35028 3.38773 4.29944 4.38905 4.42282 4.64481 4.82164 4.98842 5.03042 5.25435 5.30544 5.33088 5.43582 5.51367 5.51745 5.58544 5.73539 5.79758 5.91064 5.97190 6.16319 6.30275 6.37018 6.49402 6.59285 6.85299 6.85903 6.92900 7.18388 7.53508 7.56816 7.87633 7.99200 8.27652 8.50308 8.94387 9.56408 11.04710 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.004011 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.902723 B = 6979.219243 C = 7507.588539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.050 3.950 10 C 0.106 3.894 11 N -0.682 5.682 12 C 0.057 3.943 13 C -0.105 4.105 14 C -0.093 4.093 15 H 0.085 0.915 16 C -0.125 4.125 17 C -0.070 4.070 18 S -0.313 6.313 19 C -0.059 4.059 20 C -0.200 4.200 21 C -0.163 4.163 22 H 0.258 0.742 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.346 0.654 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -10.002 -11.837 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.049 3.951 10 C -0.023 4.023 11 N -0.313 5.313 12 C -0.073 4.073 13 C -0.144 4.144 14 C -0.113 4.113 15 H 0.103 0.897 16 C -0.164 4.164 17 C -0.218 4.218 18 S -0.087 6.087 19 C -0.207 4.207 20 C -0.237 4.237 21 C -0.201 4.201 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.165 0.835 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.052 -11.392 -11.832 16.706 hybrid contribution 0.550 2.621 -0.097 2.680 sum 3.602 -8.770 -11.929 15.238 Atomic orbital electron populations 1.69998 1.05881 1.26477 1.49360 1.25007 0.94764 0.98824 0.94720 0.86631 0.80361 0.84026 0.77553 1.19659 1.21198 1.21014 1.20508 0.93141 0.88838 1.50564 0.92146 1.18739 0.97327 0.93353 0.85652 1.21424 0.90993 0.95884 0.93985 1.60450 1.24112 1.32268 1.14497 1.21931 0.95420 0.98505 0.91398 1.21546 0.98642 1.00393 0.93810 1.22279 0.97166 0.95392 0.96482 0.89669 1.22391 0.99002 0.99347 0.95650 1.23954 0.98402 0.99134 1.00331 1.87580 1.52563 1.51098 1.17481 1.24400 1.05169 0.96269 0.94898 1.22866 0.97596 0.95834 1.07453 1.22536 0.92469 1.01348 1.03769 0.93173 0.94702 0.94552 0.83527 0.96140 0.91921 0.90773 0.91492 0.90458 0.89819 0.88888 0.89152 0.87861 0.88805 0.91718 0.90926 0.90357 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 12.95 55.43 0.72 -23.84 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.89 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.49 -13.04 8.33 -34.44 -0.29 -13.33 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.05 1.22 1.56 -155.66 -0.24 0.97 16 10 C 0.11 2.34 5.54 -3.82 -0.02 2.32 16 11 N -0.68 -12.90 6.47 -113.77 -0.74 -13.64 16 12 C 0.06 0.86 5.52 -3.82 -0.02 0.84 16 13 C -0.10 -1.24 4.95 -26.73 -0.13 -1.37 16 14 C -0.09 -0.94 2.59 -88.96 -0.23 -1.17 16 15 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 16 C -0.13 -1.07 5.76 -25.54 -0.15 -1.22 16 17 C -0.07 -0.61 7.33 37.82 0.28 -0.33 16 18 S -0.31 -3.55 23.26 -107.50 -2.50 -6.05 16 19 C -0.06 -0.63 5.99 38.29 0.23 -0.40 16 20 C -0.20 -4.47 9.96 -26.69 -0.27 -4.74 16 21 C -0.16 -3.88 9.46 -26.69 -0.25 -4.14 16 22 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.35 6.84 8.30 -39.29 -0.33 6.51 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.91 7.21 -51.93 -0.37 0.54 16 28 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.10 7.78 -51.93 -0.40 0.69 16 35 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -27.63 327.27 -10.78 -38.41 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.98 Total: 5.30 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -1.19 Total: -20.78 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.02 Total: -37.47 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.50 Total: -6.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.63 -10.78 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704933356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.861 kcal (2) G-P(sol) polarization free energy of solvation -27.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds