Wall clock time and date at job start Mon Mar 30 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99727 * 2 1 4 4 H 1.48504 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47253 * 299.99637 * 3 2 1 6 6 H 1.48504 * 109.47112 * 60.00249 * 3 2 1 7 7 C 1.37876 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00204 * 173.06065 * 7 2 1 9 9 C 1.50701 * 119.99779 * 353.06898 * 7 2 1 10 10 C 1.53001 * 115.55170 * 84.96141 * 9 7 2 11 11 N 1.46903 * 109.47137 * 65.16969 * 10 9 7 12 12 C 1.46903 * 110.99918 * 174.70666 * 11 10 9 13 13 C 1.53002 * 109.47101 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47241 * 179.97438 * 13 12 11 15 15 H 1.09009 * 109.95809 * 54.79318 * 14 13 12 16 16 C 1.54016 * 109.97781 * 175.97187 * 14 13 12 17 17 C 1.54272 * 108.84231 * 166.51927 * 16 14 13 18 18 S 1.83098 * 104.75134 * 332.19812 * 17 16 14 19 19 C 1.55134 * 109.97625 * 293.54822 * 14 13 12 20 20 C 1.52997 * 117.49921 * 230.62861 * 9 7 2 21 21 C 1.52997 * 117.49937 * 299.29181 * 9 7 2 22 22 H 0.96996 * 120.00415 * 5.03392 * 1 2 3 23 23 H 1.09004 * 109.47041 * 305.16914 * 10 9 7 24 24 H 1.08998 * 109.47576 * 185.17016 * 10 9 7 25 25 H 1.00905 * 110.99438 * 298.65551 * 11 10 9 26 26 H 1.08996 * 109.47374 * 59.99840 * 12 11 10 27 27 H 1.08998 * 109.46505 * 299.99375 * 12 11 10 28 28 H 1.09004 * 109.46774 * 59.99616 * 13 12 11 29 29 H 1.09003 * 109.46656 * 299.99802 * 13 12 11 30 30 H 1.09001 * 109.57502 * 46.66975 * 16 14 13 31 31 H 1.08999 * 109.72882 * 286.45978 * 16 14 13 32 32 H 1.08996 * 110.40253 * 213.35317 * 17 16 14 33 33 H 1.08994 * 110.40337 * 91.04652 * 17 16 14 34 34 H 1.08998 * 110.85890 * 80.34320 * 19 14 13 35 35 H 1.08995 * 110.85716 * 316.69927 * 19 14 13 36 36 H 1.08996 * 117.50116 * 215.00430 * 20 9 7 37 37 H 1.09003 * 117.49883 * 0.02767 * 20 9 7 38 38 H 1.09001 * 117.49813 * 359.97438 * 21 9 7 39 39 H 1.08999 * 117.50498 * 144.97261 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0786 -1.1974 -0.1125 9 6 1.2594 -2.4943 0.1586 10 6 0.6847 -3.0864 -1.1298 11 7 1.7841 -3.4624 -2.0288 12 6 1.2756 -4.1496 -3.2235 13 6 2.4469 -4.5240 -4.1338 14 6 1.9174 -5.2402 -5.3778 15 1 1.1660 -4.6233 -5.8708 16 6 3.0759 -5.5330 -6.3495 17 6 2.5906 -6.5374 -7.4152 18 16 1.2748 -7.5009 -6.5828 19 6 1.3025 -6.6080 -4.9804 20 6 1.7625 -3.4721 1.2224 21 6 0.4608 -2.6987 1.4475 22 1 -0.4850 0.8367 -0.0737 23 1 0.0520 -2.3460 -1.6194 24 1 0.0923 -3.9697 -0.8912 25 1 2.3354 -2.6563 -2.2825 26 1 0.5952 -3.4889 -3.7607 27 1 0.7443 -5.0531 -2.9243 28 1 3.1277 -5.1845 -3.5968 29 1 2.9779 -3.6202 -4.4329 30 1 3.9147 -5.9598 -5.7997 31 1 3.3918 -4.6093 -6.8344 32 1 3.4067 -7.1928 -7.7193 33 1 2.1863 -6.0095 -8.2788 34 1 0.2930 -6.4807 -4.5895 35 1 1.9367 -7.1238 -4.2596 36 1 1.6842 -4.5371 1.0044 37 1 2.6323 -3.1746 1.8083 38 1 0.4748 -1.8928 2.1814 39 1 -0.4741 -3.2546 1.3776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704933356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:00 Heat of formation + Delta-G solvation = -12.939295 kcal Electronic energy + Delta-G solvation = -16758.727675 eV Core-core repulsion = 14212.441917 eV Total energy + Delta-G solvation = -2546.285758 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.02591 -38.19797 -35.66802 -33.95536 -31.89081 -29.23225 -27.63349 -26.45605 -24.73177 -22.89142 -22.43162 -21.20965 -20.79234 -17.91272 -17.54286 -17.09098 -16.61560 -16.21815 -15.80559 -15.41294 -15.13770 -14.74674 -14.39836 -14.26301 -13.74571 -13.34804 -13.20380 -12.97546 -12.90777 -12.84068 -12.75587 -12.33369 -12.20244 -12.07405 -11.98584 -11.64387 -11.59816 -11.25607 -10.84053 -10.70247 -10.39469 -9.92062 -9.09463 -8.72814 -8.07496 -6.18680 0.89675 1.40107 1.44753 1.45424 1.54518 2.43900 3.20713 3.24271 3.58538 3.66119 3.85900 3.93590 4.18853 4.21984 4.27746 4.38327 4.46422 4.53157 4.63827 4.70659 4.74383 4.78019 4.83435 4.85228 4.96507 5.01965 5.04434 5.07391 5.14709 5.24690 5.29654 5.40775 5.67499 5.70282 5.81874 6.38039 6.49808 6.68842 6.91130 7.49650 9.00112 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.004011 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.902723 B = 6979.219243 C = 7507.588539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.501 4.501 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.120 3.880 11 N -0.680 5.680 12 C 0.058 3.942 13 C -0.092 4.092 14 C -0.086 4.086 15 H 0.081 0.919 16 C -0.121 4.121 17 C -0.058 4.058 18 S -0.362 6.362 19 C -0.053 4.053 20 C -0.177 4.177 21 C -0.171 4.171 22 H 0.258 0.742 23 H 0.002 0.998 24 H 0.044 0.956 25 H 0.340 0.660 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -10.382 -12.775 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.010 4.010 11 N -0.311 5.311 12 C -0.072 4.072 13 C -0.131 4.131 14 C -0.106 4.106 15 H 0.100 0.900 16 C -0.160 4.160 17 C -0.205 4.205 18 S -0.136 6.136 19 C -0.201 4.201 20 C -0.214 4.214 21 C -0.209 4.209 22 H 0.067 0.933 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.158 0.842 26 H 0.032 0.968 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.433 -11.788 -12.779 17.942 hybrid contribution 0.124 2.700 0.191 2.709 sum 4.557 -9.088 -12.587 16.181 Atomic orbital electron populations 1.70106 1.07136 1.27066 1.50475 1.25660 0.95445 1.01778 0.94597 0.85678 0.79402 0.80274 0.77309 1.18991 1.20786 1.21280 1.20727 0.92989 0.90095 1.50112 0.92763 1.18915 0.98061 0.93657 0.86829 1.21150 0.91307 0.95051 0.93465 1.60444 1.22975 1.31689 1.15952 1.22030 0.96728 0.97953 0.90449 1.21412 0.97214 1.00710 0.93784 1.22205 0.97712 0.94747 0.95977 0.90032 1.22366 0.98238 1.00045 0.95311 1.24037 0.97481 0.98795 1.00216 1.87766 1.54488 1.52532 1.18860 1.24371 1.05046 0.96315 0.94325 1.22840 0.96493 0.96495 1.05605 1.22462 0.93768 1.01401 1.03272 0.93313 0.97948 0.93741 0.84188 0.96798 0.91418 0.90585 0.91156 0.89923 0.88300 0.87491 0.88167 0.88316 0.88582 0.89634 0.90942 0.92625 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.32 12.95 21.45 0.28 -51.04 16 2 C 0.03 1.35 5.39 84.66 0.46 1.80 16 3 Si 0.95 42.48 29.55 68.60 2.03 44.50 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.50 -26.51 8.33 25.60 0.21 -26.30 16 8 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 9 C 0.03 1.26 1.56 -52.93 -0.08 1.18 16 10 C 0.12 5.27 5.54 86.30 0.48 5.75 16 11 N -0.68 -25.13 6.47 -513.87 -3.33 -28.45 16 12 C 0.06 1.66 5.52 86.30 0.48 2.14 16 13 C -0.09 -1.99 4.95 30.59 0.15 -1.84 16 14 C -0.09 -1.56 2.59 -9.72 -0.03 -1.59 16 15 H 0.08 1.57 8.14 -2.38 -0.02 1.56 16 16 C -0.12 -1.73 5.76 31.37 0.18 -1.55 16 17 C -0.06 -0.85 7.33 72.41 0.53 -0.32 16 18 S -0.36 -7.80 23.26 -56.49 -1.31 -9.11 16 19 C -0.05 -1.04 5.99 72.71 0.44 -0.61 16 20 C -0.18 -7.67 9.96 30.62 0.30 -7.37 16 21 C -0.17 -8.12 9.46 30.62 0.29 -7.83 16 22 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 23 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 24 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 25 H 0.34 13.24 8.30 -89.69 -0.74 12.50 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 1.88 7.21 -2.39 -0.02 1.87 16 28 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 2.02 7.78 -2.39 -0.02 2.00 16 35 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -58.24 327.27 1.33 -56.91 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.26 Total: 23.72 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.41 Total: -36.53 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -3.05 Total: -79.49 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -7.80 SS G_CDS: -1.31 Total: -9.11 kcal Total: -58.24 1.33 -56.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704933356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -58.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds