Wall clock time and date at job start Mon Mar 30 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 102.99723 * 2 1 4 4 C 1.53005 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.87118 * 57.39161 * 4 3 2 6 6 C 1.55137 * 110.98943 * 293.54504 * 4 3 2 7 7 C 1.54313 * 103.01795 * 206.21560 * 6 4 3 8 8 N 1.47440 * 107.23519 * 22.28834 * 7 6 4 9 9 C 1.46900 * 111.00261 * 123.25718 * 8 7 6 10 10 C 1.53001 * 109.47006 * 76.47211 * 9 8 7 11 11 C 1.50700 * 115.55267 * 303.01016 * 10 9 8 12 12 H 1.07999 * 119.99258 * 88.38235 * 11 10 9 13 13 C 1.37875 * 120.00324 * 268.38940 * 11 10 9 14 14 N 1.31518 * 119.99853 * 183.21488 * 13 11 10 15 15 Si 1.86798 * 119.99808 * 3.21430 * 13 11 10 16 16 H 1.48499 * 109.47127 * 270.81945 * 15 13 11 17 17 H 1.48508 * 109.47120 * 150.82203 * 15 13 11 18 18 H 1.48498 * 109.47395 * 30.82445 * 15 13 11 19 19 C 1.53004 * 117.49961 * 88.68604 * 10 9 8 20 20 C 1.53007 * 117.49575 * 157.34625 * 10 9 8 21 21 C 1.47845 * 108.56682 * 0.98555 * 8 7 6 22 22 H 1.08992 * 109.47576 * 299.99920 * 1 2 3 23 23 H 1.09001 * 109.47154 * 60.00121 * 1 2 3 24 24 H 1.09007 * 109.47030 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47438 * 59.99722 * 3 2 1 26 26 H 1.09002 * 109.47422 * 300.00085 * 3 2 1 27 27 H 1.08999 * 110.70313 * 87.83635 * 6 4 3 28 28 H 1.08997 * 110.70533 * 324.60137 * 6 4 3 29 29 H 1.09003 * 109.89163 * 262.87929 * 7 6 4 30 30 H 1.09011 * 110.02502 * 141.76942 * 7 6 4 31 31 H 1.08996 * 109.47247 * 316.47182 * 9 8 7 32 32 H 1.09000 * 109.47111 * 196.47140 * 9 8 7 33 33 H 0.96998 * 119.99682 * 179.97438 * 14 13 11 34 34 H 1.08996 * 117.50147 * 214.99879 * 19 10 9 35 35 H 1.09002 * 117.49350 * 0.02562 * 19 10 9 36 36 H 1.08999 * 117.49961 * 359.97438 * 20 10 9 37 37 H 1.08998 * 117.49933 * 144.99924 * 20 10 9 38 38 H 1.09000 * 110.37090 * 94.73360 * 21 8 7 39 39 H 1.09001 * 110.37316 * 217.07825 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7422 1.9401 0.0006 5 1 4.1903 1.4384 -0.8571 6 6 4.3590 1.4280 1.3288 7 6 5.6582 2.2520 1.4492 8 7 5.4831 3.4657 0.6306 9 6 5.6781 4.6777 1.4375 10 6 7.1734 4.8950 1.6781 11 6 7.8977 3.7525 2.3422 12 1 8.3231 2.9614 1.7425 13 6 8.0172 3.7170 3.7153 14 7 8.7033 2.7539 4.2910 15 14 7.2045 5.0368 4.7579 16 1 8.1429 6.1738 4.9368 17 1 6.8526 4.4720 6.0855 18 1 5.9722 5.5138 4.0805 19 6 7.9446 5.7121 0.6396 20 6 7.6360 6.3145 2.0127 21 6 4.1313 3.4392 0.0325 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8029 2.2372 0.8900 26 1 1.8030 2.2372 -0.8900 27 1 4.5827 0.3631 1.2645 28 1 3.6934 1.6331 2.1672 29 1 6.5016 1.6713 1.0757 30 1 5.8300 2.5281 2.4897 31 1 5.1690 4.5629 2.3944 32 1 5.2667 5.5369 0.9078 33 1 8.7876 2.7291 5.2570 34 1 8.9759 5.4234 0.4367 35 1 7.3866 6.0952 -0.2148 36 1 6.8753 7.0936 2.0609 37 1 8.4643 6.4220 2.7130 38 1 3.4313 3.9999 0.6519 39 1 4.1555 3.8465 -0.9783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706673147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:56 Heat of formation + Delta-G solvation = 26.514814 kcal Electronic energy + Delta-G solvation = -17459.201812 eV Core-core repulsion = 14914.626912 eV Total energy + Delta-G solvation = -2544.574900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80643 -36.54979 -32.59178 -32.04300 -29.40790 -28.89915 -27.02159 -25.29360 -24.11631 -21.52212 -20.36738 -20.18831 -18.61983 -16.54578 -16.19493 -15.66038 -14.94443 -14.60886 -14.21024 -13.99160 -13.77638 -13.43419 -13.24961 -12.93676 -12.68874 -12.54678 -12.23542 -12.04898 -11.53916 -11.13607 -10.82266 -10.80921 -10.59654 -10.55201 -10.29580 -10.06602 -10.00255 -9.88950 -9.47508 -8.89133 -8.49271 -8.37364 -7.76266 -7.47003 -6.04864 -4.02803 1.56829 2.51020 3.30302 3.40018 3.43877 4.45404 4.46468 4.76213 4.90041 4.92646 4.94453 5.04702 5.24759 5.31494 5.39190 5.45949 5.50530 5.64320 5.78910 5.84763 6.04776 6.13973 6.14258 6.22547 6.31588 6.37879 6.41655 6.56297 6.57647 6.83754 6.89747 7.06747 7.16871 7.24020 7.80714 7.84814 7.92953 8.61996 9.01586 9.58842 11.06904 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.005463 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.804074 B = 5124.085067 C = 5518.050654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.259 6.259 3 C -0.071 4.071 4 C -0.083 4.083 5 H 0.090 0.910 6 C -0.138 4.138 7 C 0.060 3.940 8 N -0.511 5.511 9 C 0.089 3.911 10 C 0.012 3.988 11 C -0.469 4.469 12 H 0.081 0.919 13 C 0.073 3.927 14 N -0.900 5.900 15 Si 0.876 3.124 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.263 1.263 19 C -0.171 4.171 20 C -0.210 4.210 21 C 0.052 3.948 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.732 -0.835 -7.477 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.033 6.033 3 C -0.219 4.219 4 C -0.103 4.103 5 H 0.109 0.891 6 C -0.176 4.176 7 C -0.067 4.067 8 N -0.235 5.235 9 C -0.039 4.039 10 C 0.010 3.990 11 C -0.507 4.507 12 H 0.099 0.901 13 C -0.128 4.128 14 N -0.538 5.538 15 Si 0.705 3.295 16 H -0.206 1.206 17 H -0.225 1.225 18 H -0.188 1.188 19 C -0.208 4.208 20 C -0.248 4.248 21 C -0.078 4.078 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.636 -1.783 -7.680 15.751 hybrid contribution -1.893 1.835 1.384 2.977 sum -15.529 0.052 -6.296 16.756 Atomic orbital electron populations 1.23370 0.95171 1.06246 1.04620 1.87042 1.06187 1.12033 1.98010 1.23413 1.00283 0.93728 1.04517 1.22078 0.90895 0.97162 1.00148 0.89141 1.22977 0.98224 1.00859 0.95580 1.22857 0.95198 0.89826 0.98854 1.63397 1.23770 1.02742 1.33570 1.21966 0.97183 0.90716 0.94049 1.19329 0.91084 0.90149 0.98409 1.20262 1.33406 1.05957 0.91076 0.90137 1.24962 0.94682 0.95387 0.97757 1.69896 1.40644 1.32922 1.10291 0.86937 0.80961 0.82360 0.79270 1.20551 1.22491 1.18765 1.22727 1.01159 1.05950 0.90967 1.22988 1.03388 0.98278 1.00149 1.23053 0.90809 0.94165 0.99804 0.90711 0.90776 0.88295 0.90284 0.90208 0.90891 0.92094 0.90576 0.90269 0.95123 0.93694 0.92758 0.89857 0.91194 0.91362 0.89575 0.94491 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 10.76 101.05 1.09 0.04 16 2 S -0.26 -3.08 21.94 -107.50 -2.36 -5.44 16 3 C -0.07 -0.82 5.43 37.16 0.20 -0.61 16 4 C -0.08 -1.15 3.06 -88.48 -0.27 -1.42 16 5 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 6 C -0.14 -2.22 5.94 -24.91 -0.15 -2.37 16 7 C 0.06 1.20 5.22 -2.84 -0.01 1.18 16 8 N -0.51 -9.83 5.10 -231.25 -1.18 -11.01 16 9 C 0.09 1.84 4.54 -3.82 -0.02 1.82 16 10 C 0.01 0.27 1.11 -155.65 -0.17 0.09 16 11 C -0.47 -12.58 6.58 -34.44 -0.23 -12.81 16 12 H 0.08 2.40 7.82 -52.49 -0.41 1.99 16 13 C 0.07 2.04 5.33 -17.82 -0.09 1.95 16 14 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 15 Si 0.88 21.55 24.71 -169.99 -4.20 17.35 16 16 H -0.28 -6.82 7.00 56.52 0.40 -6.42 16 17 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.26 -6.18 5.92 56.52 0.33 -5.84 16 19 C -0.17 -3.58 9.94 -26.69 -0.27 -3.84 16 20 C -0.21 -4.54 7.53 -26.69 -0.20 -4.74 16 21 C 0.05 0.78 6.10 -2.30 -0.01 0.77 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 24 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 25 H 0.08 0.89 8.11 -51.92 -0.42 0.47 16 26 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.08 1.65 7.93 -51.93 -0.41 1.24 16 30 H 0.08 1.83 6.07 -51.92 -0.32 1.52 16 31 H 0.03 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.04 0.85 7.94 -51.93 -0.41 0.43 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.97 6.81 -51.93 -0.35 1.62 16 38 H 0.04 0.54 7.71 -51.93 -0.40 0.14 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -28.56 313.86 -9.28 -37.84 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.91 Total: 2.42 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -0.14 Total: -19.94 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.41 Total: -36.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.20 Total: 17.35 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.36 Total: -5.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.56 -9.28 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706673147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.356 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds