Wall clock time and date at job start Mon Mar 30 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 102.99723 * 2 1 4 4 C 1.53005 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.87118 * 57.39161 * 4 3 2 6 6 C 1.55137 * 110.98943 * 293.54504 * 4 3 2 7 7 C 1.54313 * 103.01795 * 206.21560 * 6 4 3 8 8 N 1.47440 * 107.23519 * 22.28834 * 7 6 4 9 9 C 1.46900 * 111.00261 * 123.25718 * 8 7 6 10 10 C 1.53001 * 109.47006 * 76.47211 * 9 8 7 11 11 C 1.50700 * 115.55267 * 303.01016 * 10 9 8 12 12 H 1.07999 * 119.99258 * 88.38235 * 11 10 9 13 13 C 1.37875 * 120.00324 * 268.38940 * 11 10 9 14 14 N 1.31518 * 119.99853 * 183.21488 * 13 11 10 15 15 Si 1.86798 * 119.99808 * 3.21430 * 13 11 10 16 16 H 1.48499 * 109.47127 * 270.81945 * 15 13 11 17 17 H 1.48508 * 109.47120 * 150.82203 * 15 13 11 18 18 H 1.48498 * 109.47395 * 30.82445 * 15 13 11 19 19 C 1.53004 * 117.49961 * 88.68604 * 10 9 8 20 20 C 1.53007 * 117.49575 * 157.34625 * 10 9 8 21 21 C 1.47845 * 108.56682 * 0.98555 * 8 7 6 22 22 H 1.08992 * 109.47576 * 299.99920 * 1 2 3 23 23 H 1.09001 * 109.47154 * 60.00121 * 1 2 3 24 24 H 1.09007 * 109.47030 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47438 * 59.99722 * 3 2 1 26 26 H 1.09002 * 109.47422 * 300.00085 * 3 2 1 27 27 H 1.08999 * 110.70313 * 87.83635 * 6 4 3 28 28 H 1.08997 * 110.70533 * 324.60137 * 6 4 3 29 29 H 1.09003 * 109.89163 * 262.87929 * 7 6 4 30 30 H 1.09011 * 110.02502 * 141.76942 * 7 6 4 31 31 H 1.08996 * 109.47247 * 316.47182 * 9 8 7 32 32 H 1.09000 * 109.47111 * 196.47140 * 9 8 7 33 33 H 0.96998 * 119.99682 * 179.97438 * 14 13 11 34 34 H 1.08996 * 117.50147 * 214.99879 * 19 10 9 35 35 H 1.09002 * 117.49350 * 0.02562 * 19 10 9 36 36 H 1.08999 * 117.49961 * 359.97438 * 20 10 9 37 37 H 1.08998 * 117.49933 * 144.99924 * 20 10 9 38 38 H 1.09000 * 110.37090 * 94.73360 * 21 8 7 39 39 H 1.09001 * 110.37316 * 217.07825 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7422 1.9401 0.0006 5 1 4.1903 1.4384 -0.8571 6 6 4.3590 1.4280 1.3288 7 6 5.6582 2.2520 1.4492 8 7 5.4831 3.4657 0.6306 9 6 5.6781 4.6777 1.4375 10 6 7.1734 4.8950 1.6781 11 6 7.8977 3.7525 2.3422 12 1 8.3231 2.9614 1.7425 13 6 8.0172 3.7170 3.7153 14 7 8.7033 2.7539 4.2910 15 14 7.2045 5.0368 4.7579 16 1 8.1429 6.1738 4.9368 17 1 6.8526 4.4720 6.0855 18 1 5.9722 5.5138 4.0805 19 6 7.9446 5.7121 0.6396 20 6 7.6360 6.3145 2.0127 21 6 4.1313 3.4392 0.0325 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8029 2.2372 0.8900 26 1 1.8030 2.2372 -0.8900 27 1 4.5827 0.3631 1.2645 28 1 3.6934 1.6331 2.1672 29 1 6.5016 1.6713 1.0757 30 1 5.8300 2.5281 2.4897 31 1 5.1690 4.5629 2.3944 32 1 5.2667 5.5369 0.9078 33 1 8.7876 2.7291 5.2570 34 1 8.9759 5.4234 0.4367 35 1 7.3866 6.0952 -0.2148 36 1 6.8753 7.0936 2.0609 37 1 8.4643 6.4220 2.7130 38 1 3.4313 3.9999 0.6519 39 1 4.1555 3.8465 -0.9783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706673147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:55 Heat of formation + Delta-G solvation = 8.855834 kcal Electronic energy + Delta-G solvation = -17459.967563 eV Core-core repulsion = 14914.626912 eV Total energy + Delta-G solvation = -2545.340650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26971 -38.20390 -34.18505 -33.89272 -30.62459 -29.73762 -28.52953 -27.15119 -25.52615 -23.23242 -21.94459 -21.40841 -20.42034 -18.24248 -17.57876 -16.91792 -16.70321 -16.03063 -15.63310 -15.15676 -14.83846 -14.78014 -14.60362 -14.27702 -14.15837 -13.91773 -13.60615 -13.42826 -13.02828 -12.91640 -12.57578 -12.12343 -12.04182 -11.96885 -11.86405 -11.78870 -11.54919 -11.30119 -10.83977 -10.78467 -10.53807 -10.18248 -9.00642 -8.65138 -8.21648 -6.21931 0.74944 1.34273 1.37242 1.48222 1.72480 2.39713 3.00711 3.13080 3.48564 3.63466 3.80885 3.90656 4.15648 4.34147 4.36008 4.38628 4.41007 4.43286 4.44286 4.55871 4.59598 4.70571 4.76654 4.81436 4.89536 4.89941 4.93618 5.01325 5.15373 5.21894 5.32970 5.40438 5.46131 5.54446 5.80983 6.24673 6.39640 6.50412 6.83298 7.42115 8.94200 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.005463 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.804074 B = 5124.085067 C = 5518.050654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.318 6.318 3 C -0.056 4.056 4 C -0.071 4.071 5 H 0.085 0.915 6 C -0.128 4.128 7 C 0.068 3.932 8 N -0.526 5.526 9 C 0.097 3.903 10 C -0.018 4.018 11 C -0.455 4.455 12 H 0.031 0.969 13 C 0.020 3.980 14 N -0.951 5.951 15 Si 0.932 3.068 16 H -0.272 1.272 17 H -0.304 1.304 18 H -0.238 1.238 19 C -0.157 4.157 20 C -0.202 4.202 21 C 0.052 3.948 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.900 1.329 -8.779 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.204 4.204 4 C -0.090 4.090 5 H 0.104 0.896 6 C -0.166 4.166 7 C -0.060 4.060 8 N -0.250 5.250 9 C -0.031 4.031 10 C -0.019 4.019 11 C -0.493 4.493 12 H 0.049 0.951 13 C -0.177 4.177 14 N -0.592 5.592 15 Si 0.758 3.242 16 H -0.198 1.198 17 H -0.232 1.232 18 H -0.161 1.161 19 C -0.194 4.194 20 C -0.240 4.240 21 C -0.077 4.077 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.127 0.873 25 H 0.104 0.896 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.820 0.399 -9.014 19.087 hybrid contribution -0.862 1.064 1.693 2.177 sum -17.682 1.463 -7.321 19.194 Atomic orbital electron populations 1.23412 0.91262 1.07335 1.05800 1.87288 1.10566 1.13173 1.98183 1.23278 0.98010 0.93201 1.05949 1.21945 0.92801 0.96167 0.98132 0.89645 1.22829 0.96349 0.99970 0.97490 1.22530 0.96200 0.90854 0.96387 1.63309 1.26958 1.01754 1.32934 1.21821 0.94948 0.92213 0.94125 1.19354 0.92686 0.89590 1.00270 1.20285 1.32387 1.05850 0.90752 0.95116 1.25688 0.95426 0.97474 0.99068 1.70051 1.43268 1.35507 1.10401 0.86023 0.81047 0.79814 0.77332 1.19779 1.23200 1.16139 1.22743 1.00483 1.04445 0.91756 1.23016 1.03403 0.97671 0.99907 1.23159 0.88761 0.95108 1.00629 0.89841 0.89227 0.87294 0.89628 0.87885 0.91289 0.91634 0.94053 0.94126 0.96497 0.90574 0.93008 0.91294 0.88018 0.88108 0.91308 0.92967 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.76 113.37 1.22 -0.26 16 2 S -0.32 -6.98 21.94 -56.49 -1.24 -8.22 16 3 C -0.06 -1.12 5.43 71.98 0.39 -0.73 16 4 C -0.07 -1.82 3.06 -9.41 -0.03 -1.85 16 5 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 6 C -0.13 -4.11 5.94 31.77 0.19 -3.93 16 7 C 0.07 2.83 5.22 86.65 0.45 3.29 16 8 N -0.53 -19.66 5.10 -885.54 -4.52 -24.18 16 9 C 0.10 3.80 4.54 86.30 0.39 4.19 16 10 C -0.02 -0.80 1.11 -52.92 -0.06 -0.86 16 11 C -0.45 -25.35 6.58 25.60 0.17 -25.18 16 12 H 0.03 1.97 7.82 -2.91 -0.02 1.94 16 13 C 0.02 1.13 5.33 84.65 0.45 1.58 16 14 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 15 Si 0.93 44.64 24.71 68.60 1.70 46.33 16 16 H -0.27 -12.64 7.00 99.48 0.70 -11.95 16 17 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 18 H -0.24 -10.38 5.92 99.48 0.59 -9.79 16 19 C -0.16 -6.25 9.94 30.62 0.30 -5.94 16 20 C -0.20 -8.19 7.53 30.62 0.23 -7.96 16 21 C 0.05 1.43 6.10 86.77 0.53 1.96 16 22 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.05 8.01 -2.39 -0.02 2.03 16 29 H 0.04 1.94 7.93 -2.39 -0.02 1.92 16 30 H 0.04 1.97 6.07 -2.38 -0.01 1.96 16 31 H 0.02 0.70 6.46 -2.39 -0.02 0.69 16 32 H 0.08 2.51 7.94 -2.39 -0.02 2.49 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.07 3.03 6.81 -2.39 -0.02 3.01 16 38 H 0.05 1.30 7.71 -2.39 -0.02 1.28 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.23 313.86 1.34 -63.89 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.86 Total: 17.06 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 4.24 Total: -35.70 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -4.22 Total: -83.37 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.70 Total: 46.33 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.24 Total: -8.22 kcal Total: -65.23 1.34 -63.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706673147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.749 kcal (2) G-P(sol) polarization free energy of solvation -65.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds