Wall clock time and date at job start Mon Mar 30 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99781 * 2 1 4 4 C 1.52997 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.76660 * 303.25390 * 4 3 2 6 6 C 1.55141 * 110.70488 * 66.45179 * 4 3 2 7 7 C 1.54910 * 101.65238 * 154.03717 * 6 4 3 8 8 N 1.47844 * 104.79548 * 322.93250 * 7 6 4 9 9 C 1.46898 * 111.00395 * 146.36540 * 8 7 6 10 10 C 1.53001 * 109.47072 * 55.12761 * 9 8 7 11 11 C 1.50707 * 115.54962 * 268.74639 * 10 9 8 12 12 H 1.07999 * 119.99603 * 115.66232 * 11 10 9 13 13 C 1.37878 * 120.00075 * 295.65935 * 11 10 9 14 14 N 1.31521 * 119.99925 * 356.57313 * 13 11 10 15 15 Si 1.86799 * 119.99941 * 176.56672 * 13 11 10 16 16 H 1.48499 * 109.46627 * 60.00482 * 15 13 11 17 17 H 1.48502 * 109.46942 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47230 * 300.00250 * 15 13 11 19 19 C 1.52997 * 117.49710 * 123.03943 * 10 9 8 20 20 C 1.52995 * 117.50011 * 54.41787 * 10 9 8 21 21 C 1.47441 * 108.56921 * 24.09112 * 8 7 6 22 22 H 1.08997 * 109.47105 * 300.00017 * 1 2 3 23 23 H 1.09003 * 109.47065 * 60.00227 * 1 2 3 24 24 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47377 * 60.00038 * 3 2 1 26 26 H 1.09001 * 109.46708 * 299.99858 * 3 2 1 27 27 H 1.09001 * 110.99018 * 272.12408 * 6 4 3 28 28 H 1.09000 * 110.99304 * 35.94831 * 6 4 3 29 29 H 1.09003 * 110.37250 * 81.75931 * 7 6 4 30 30 H 1.08996 * 110.37841 * 204.09852 * 7 6 4 31 31 H 1.08996 * 109.47415 * 175.13334 * 9 8 7 32 32 H 1.09011 * 109.46995 * 295.13055 * 9 8 7 33 33 H 0.96994 * 119.99657 * 185.08937 * 14 13 11 34 34 H 1.09005 * 117.50353 * 0.02562 * 19 10 9 35 35 H 1.09004 * 117.50001 * 145.01681 * 19 10 9 36 36 H 1.08998 * 117.50423 * 214.97710 * 20 10 9 37 37 H 1.09007 * 117.49614 * 359.97438 * 20 10 9 38 38 H 1.09000 * 109.89134 * 239.60432 * 21 8 7 39 39 H 1.09000 * 109.88889 * 118.41613 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.1896 1.4282 0.8514 6 6 4.3520 1.4259 -1.3313 7 6 5.6525 2.2625 -1.4234 8 7 5.2844 3.5923 -0.8924 9 6 6.4142 4.2072 -0.1828 10 6 7.6301 4.2612 -1.1099 11 6 8.5528 3.0716 -1.0417 12 1 8.6762 2.4338 -1.9045 13 6 9.2395 2.7975 0.1221 14 7 9.1418 3.6116 1.1505 15 14 10.3085 1.2700 0.2382 16 1 11.3695 1.3285 -0.7991 17 1 10.9338 1.2047 1.5836 18 1 9.4715 0.0625 0.0227 19 6 8.2606 5.6309 -1.3690 20 6 7.4524 4.9403 -2.4693 21 6 4.1216 3.4358 0.0006 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8031 2.2372 0.8899 26 1 1.8030 2.2371 -0.8900 27 1 4.5763 0.3609 -1.2723 28 1 3.6909 1.6382 -2.1716 29 1 6.4363 1.8139 -0.8130 30 1 5.9783 2.3448 -2.4602 31 1 6.1447 5.2182 0.1224 32 1 6.6557 3.6137 0.6991 33 1 9.6811 3.4596 1.9422 34 1 7.8094 6.4936 -0.8787 35 1 9.3431 5.6720 -1.4900 36 1 8.0031 4.5271 -3.3143 37 1 6.4690 5.3483 -2.7034 38 1 3.2867 4.0306 -0.3700 39 1 4.3846 3.7508 1.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706673148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:57 Heat of formation + Delta-G solvation = 19.967726 kcal Electronic energy + Delta-G solvation = -17441.940183 eV Core-core repulsion = 14897.081381 eV Total energy + Delta-G solvation = -2544.858803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.71212 -36.18082 -32.36510 -31.97406 -29.39469 -28.89809 -26.60530 -25.33579 -23.97693 -20.98004 -20.57676 -19.89640 -18.69704 -16.57665 -16.10006 -15.16766 -14.83503 -14.46895 -14.21090 -13.94842 -13.63240 -13.48373 -13.28648 -12.98203 -12.67881 -12.21617 -11.86129 -11.44711 -11.31810 -10.95549 -10.83831 -10.78642 -10.62142 -10.48336 -10.27559 -10.18285 -10.04786 -9.91449 -9.29195 -8.76869 -8.46122 -8.08002 -7.72531 -7.33769 -6.02352 -4.06484 1.61514 2.55459 3.29802 3.35168 3.37844 4.40068 4.73062 4.82638 4.85839 4.95579 4.97565 5.20264 5.23868 5.47200 5.49633 5.56185 5.64759 5.78166 5.93409 6.01999 6.20636 6.23721 6.37348 6.46784 6.56973 6.62536 6.79482 6.90235 6.91708 6.98371 7.05879 7.18518 7.52057 7.57030 7.84596 8.00459 8.07177 8.49954 8.93691 9.56090 11.05410 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.005695 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.091623 B = 4915.484998 C = 5596.284631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.264 6.264 3 C -0.066 4.066 4 C -0.095 4.095 5 H 0.081 0.919 6 C -0.123 4.123 7 C 0.055 3.945 8 N -0.526 5.526 9 C 0.097 3.903 10 C 0.053 3.947 11 C -0.488 4.488 12 H 0.058 0.942 13 C 0.070 3.930 14 N -0.881 5.881 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.180 4.180 20 C -0.193 4.193 21 C 0.054 3.946 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 -3.567 -1.324 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.038 6.038 3 C -0.215 4.215 4 C -0.115 4.115 5 H 0.100 0.900 6 C -0.162 4.162 7 C -0.072 4.072 8 N -0.250 5.250 9 C -0.030 4.030 10 C 0.053 3.947 11 C -0.526 4.526 12 H 0.076 0.924 13 C -0.133 4.133 14 N -0.518 5.518 15 Si 0.712 3.288 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.219 4.219 20 C -0.231 4.231 21 C -0.077 4.077 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.647 -4.118 -1.494 14.333 hybrid contribution 0.035 -0.159 0.906 0.920 sum -13.611 -4.277 -0.588 14.280 Atomic orbital electron populations 1.23360 0.95154 1.06167 1.04627 1.87041 1.06225 1.12535 1.98024 1.23437 1.00166 0.93304 1.04595 1.22184 0.91443 0.97975 0.99930 0.90037 1.22837 0.97857 0.99684 0.95789 1.22973 0.95283 0.87648 1.01333 1.63684 1.05976 1.21747 1.33596 1.21806 0.88565 0.96737 0.95925 1.18770 0.93311 0.91497 0.91162 1.20493 1.25036 1.09577 0.97470 0.92374 1.24965 0.96467 0.96323 0.95570 1.69958 1.39523 1.37035 1.05255 0.86773 0.80886 0.83931 0.77165 1.20243 1.21329 1.20124 1.22754 0.97884 0.97559 1.03660 1.22732 0.99444 1.07376 0.93514 1.22803 0.95165 0.93312 0.96378 0.90787 0.90690 0.88384 0.90352 0.89928 0.91238 0.91382 0.91248 0.90828 0.93986 0.92985 0.92994 0.92126 0.90712 0.91250 0.90934 0.91595 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.76 101.05 1.09 0.03 16 2 S -0.26 -3.25 21.92 -107.50 -2.36 -5.61 16 3 C -0.07 -0.80 5.28 37.16 0.20 -0.60 16 4 C -0.09 -1.41 2.97 -88.80 -0.26 -1.67 16 5 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 6 C -0.12 -1.95 6.04 -24.59 -0.15 -2.10 16 7 C 0.06 1.07 5.39 -2.30 -0.01 1.05 16 8 N -0.53 -10.32 5.04 -231.25 -1.17 -11.49 16 9 C 0.10 2.22 4.49 -3.82 -0.02 2.20 16 10 C 0.05 1.30 0.89 -155.66 -0.14 1.16 16 11 C -0.49 -12.89 6.90 -34.44 -0.24 -13.12 16 12 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 13 C 0.07 1.87 5.24 -17.82 -0.09 1.77 16 14 N -0.88 -24.57 12.41 55.43 0.69 -23.88 16 15 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.18 -4.26 9.88 -26.74 -0.26 -4.52 16 20 C -0.19 -4.29 9.71 -26.74 -0.26 -4.55 16 21 C 0.05 0.88 6.49 -2.84 -0.02 0.86 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 24 H 0.10 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.94 8.10 -51.92 -0.42 0.52 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.01 8.02 -51.93 -0.42 0.60 16 29 H 0.07 1.55 6.47 -51.93 -0.34 1.22 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 32 H 0.05 1.33 7.09 -51.92 -0.37 0.96 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.06 1.36 8.03 -51.93 -0.42 0.95 16 35 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.07 0.97 7.82 -51.93 -0.41 0.57 16 39 H 0.05 0.85 7.57 -51.93 -0.39 0.46 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -27.32 322.80 -10.10 -37.42 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.94 Total: 2.32 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -0.17 Total: -19.49 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.48 Total: -35.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.36 Total: -5.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.32 -10.10 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706673148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.385 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds