Wall clock time and date at job start Mon Mar 30 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99781 * 2 1 4 4 C 1.52997 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.76660 * 303.25390 * 4 3 2 6 6 C 1.55141 * 110.70488 * 66.45179 * 4 3 2 7 7 C 1.54910 * 101.65238 * 154.03717 * 6 4 3 8 8 N 1.47844 * 104.79548 * 322.93250 * 7 6 4 9 9 C 1.46898 * 111.00395 * 146.36540 * 8 7 6 10 10 C 1.53001 * 109.47072 * 55.12761 * 9 8 7 11 11 C 1.50707 * 115.54962 * 268.74639 * 10 9 8 12 12 H 1.07999 * 119.99603 * 115.66232 * 11 10 9 13 13 C 1.37878 * 120.00075 * 295.65935 * 11 10 9 14 14 N 1.31521 * 119.99925 * 356.57313 * 13 11 10 15 15 Si 1.86799 * 119.99941 * 176.56672 * 13 11 10 16 16 H 1.48499 * 109.46627 * 60.00482 * 15 13 11 17 17 H 1.48502 * 109.46942 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47230 * 300.00250 * 15 13 11 19 19 C 1.52997 * 117.49710 * 123.03943 * 10 9 8 20 20 C 1.52995 * 117.50011 * 54.41787 * 10 9 8 21 21 C 1.47441 * 108.56921 * 24.09112 * 8 7 6 22 22 H 1.08997 * 109.47105 * 300.00017 * 1 2 3 23 23 H 1.09003 * 109.47065 * 60.00227 * 1 2 3 24 24 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47377 * 60.00038 * 3 2 1 26 26 H 1.09001 * 109.46708 * 299.99858 * 3 2 1 27 27 H 1.09001 * 110.99018 * 272.12408 * 6 4 3 28 28 H 1.09000 * 110.99304 * 35.94831 * 6 4 3 29 29 H 1.09003 * 110.37250 * 81.75931 * 7 6 4 30 30 H 1.08996 * 110.37841 * 204.09852 * 7 6 4 31 31 H 1.08996 * 109.47415 * 175.13334 * 9 8 7 32 32 H 1.09011 * 109.46995 * 295.13055 * 9 8 7 33 33 H 0.96994 * 119.99657 * 185.08937 * 14 13 11 34 34 H 1.09005 * 117.50353 * 0.02562 * 19 10 9 35 35 H 1.09004 * 117.50001 * 145.01681 * 19 10 9 36 36 H 1.08998 * 117.50423 * 214.97710 * 20 10 9 37 37 H 1.09007 * 117.49614 * 359.97438 * 20 10 9 38 38 H 1.09000 * 109.89134 * 239.60432 * 21 8 7 39 39 H 1.09000 * 109.88889 * 118.41613 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.1896 1.4282 0.8514 6 6 4.3520 1.4259 -1.3313 7 6 5.6525 2.2625 -1.4234 8 7 5.2844 3.5923 -0.8924 9 6 6.4142 4.2072 -0.1828 10 6 7.6301 4.2612 -1.1099 11 6 8.5528 3.0716 -1.0417 12 1 8.6762 2.4338 -1.9045 13 6 9.2395 2.7975 0.1221 14 7 9.1418 3.6116 1.1505 15 14 10.3085 1.2700 0.2382 16 1 11.3695 1.3285 -0.7991 17 1 10.9338 1.2047 1.5836 18 1 9.4715 0.0625 0.0227 19 6 8.2606 5.6309 -1.3690 20 6 7.4524 4.9403 -2.4693 21 6 4.1216 3.4358 0.0006 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8031 2.2372 0.8899 26 1 1.8030 2.2371 -0.8900 27 1 4.5763 0.3609 -1.2723 28 1 3.6909 1.6382 -2.1716 29 1 6.4363 1.8139 -0.8130 30 1 5.9783 2.3448 -2.4602 31 1 6.1447 5.2182 0.1224 32 1 6.6557 3.6137 0.6991 33 1 9.6811 3.4596 1.9422 34 1 7.8094 6.4936 -0.8787 35 1 9.3431 5.6720 -1.4900 36 1 8.0031 4.5271 -3.3143 37 1 6.4690 5.3483 -2.7034 38 1 3.2867 4.0306 -0.3700 39 1 4.3846 3.7508 1.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706673148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:57 Heat of formation + Delta-G solvation = 5.509368 kcal Electronic energy + Delta-G solvation = -17442.567145 eV Core-core repulsion = 14897.081381 eV Total energy + Delta-G solvation = -2545.485764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23369 -37.92856 -34.07198 -33.72229 -30.65160 -29.72097 -28.21475 -27.17344 -25.47935 -22.82629 -22.15710 -21.18393 -20.55783 -18.25311 -17.38688 -16.71045 -16.50633 -16.04141 -15.62378 -15.14823 -15.02051 -14.76752 -14.42577 -14.19727 -13.96776 -13.71773 -13.29624 -13.14941 -12.89451 -12.76252 -12.69397 -12.35903 -12.20742 -11.96562 -11.87307 -11.74657 -11.54938 -11.17677 -10.83737 -10.73887 -10.42730 -9.97487 -8.99691 -8.65202 -8.08775 -6.17064 0.76056 1.39622 1.41215 1.47373 1.73456 2.41752 3.13485 3.22981 3.65010 3.68401 3.74537 3.98050 4.28114 4.37099 4.37193 4.39830 4.46225 4.56937 4.62324 4.69069 4.74779 4.76258 4.90697 4.91233 4.97543 5.07399 5.09226 5.13376 5.22019 5.29140 5.33982 5.43490 5.66061 5.67498 5.83554 6.31005 6.41500 6.46524 6.88515 7.47388 8.98327 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.005695 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.091623 B = 4915.484998 C = 5596.284631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.319 6.319 3 C -0.052 4.052 4 C -0.086 4.086 5 H 0.063 0.937 6 C -0.110 4.110 7 C 0.058 3.942 8 N -0.525 5.525 9 C 0.113 3.887 10 C 0.030 3.970 11 C -0.493 4.493 12 H 0.050 0.950 13 C 0.027 3.973 14 N -0.908 5.908 15 Si 0.939 3.061 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.186 4.186 20 C -0.168 4.168 21 C 0.051 3.949 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.017 0.983 33 H 0.258 0.742 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.325 -3.883 -2.012 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.094 6.094 3 C -0.200 4.200 4 C -0.107 4.107 5 H 0.081 0.919 6 C -0.148 4.148 7 C -0.070 4.070 8 N -0.249 5.249 9 C -0.015 4.015 10 C 0.029 3.971 11 C -0.531 4.531 12 H 0.068 0.932 13 C -0.173 4.173 14 N -0.546 5.546 15 Si 0.765 3.235 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.225 4.225 20 C -0.205 4.205 21 C -0.078 4.078 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.127 0.873 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.777 -4.436 -2.194 16.535 hybrid contribution 0.643 -0.067 1.098 1.274 sum -15.134 -4.503 -1.096 15.828 Atomic orbital electron populations 1.23411 0.91124 1.07336 1.05844 1.87252 1.10702 1.13211 1.98196 1.23278 0.97606 0.93132 1.06011 1.22030 0.93711 0.96379 0.98565 0.91899 1.22724 0.96108 0.98965 0.96995 1.22828 0.96220 0.88070 0.99855 1.63680 1.05553 1.21762 1.33870 1.21481 0.89272 0.96209 0.94504 1.18872 0.93902 0.91175 0.93157 1.20685 1.25196 1.10112 0.97145 0.93212 1.25568 0.97781 0.98590 0.95382 1.70063 1.40399 1.38561 1.05602 0.85909 0.79460 0.81037 0.77078 1.19771 1.21206 1.19852 1.22722 0.97232 0.97658 1.04850 1.22688 0.99758 1.05553 0.92490 1.22906 0.94464 0.94925 0.95526 0.89584 0.89427 0.87254 0.88889 0.88489 0.91263 0.89663 0.94975 0.91684 0.94082 0.96514 0.93247 0.91150 0.92276 0.91063 0.89294 0.88938 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.76 113.37 1.22 -0.28 16 2 S -0.32 -7.19 21.92 -56.49 -1.24 -8.43 16 3 C -0.05 -1.11 5.28 71.98 0.38 -0.73 16 4 C -0.09 -2.45 2.97 -9.61 -0.03 -2.47 16 5 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.11 -3.33 6.04 31.98 0.19 -3.14 16 7 C 0.06 2.25 5.39 86.77 0.47 2.72 16 8 N -0.52 -20.28 5.04 -885.54 -4.46 -24.75 16 9 C 0.11 5.25 4.49 86.30 0.39 5.64 16 10 C 0.03 1.45 0.89 -52.93 -0.05 1.41 16 11 C -0.49 -26.55 6.90 25.60 0.18 -26.37 16 12 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 13 C 0.03 1.46 5.24 84.65 0.44 1.90 16 14 N -0.91 -51.84 12.41 21.45 0.27 -51.57 16 15 Si 0.94 43.55 29.54 68.60 2.03 45.58 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 C -0.19 -8.80 9.88 30.59 0.30 -8.49 16 20 C -0.17 -7.28 9.71 30.59 0.30 -6.98 16 21 C 0.05 1.61 6.49 86.65 0.56 2.17 16 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 1.82 8.10 -2.39 -0.02 1.80 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 29 H 0.03 1.48 6.47 -2.39 -0.02 1.47 16 30 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.04 1.87 7.87 -2.39 -0.02 1.85 16 32 H 0.02 0.88 7.09 -2.38 -0.02 0.87 16 33 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 34 H 0.07 3.14 8.03 -2.38 -0.02 3.12 16 35 H 0.06 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.09 3.57 8.14 -2.38 -0.02 3.55 16 38 H 0.09 2.44 7.82 -2.39 -0.02 2.42 16 39 H 0.04 1.41 7.57 -2.39 -0.02 1.39 16 Total: -1.00 -59.10 322.80 1.93 -57.17 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.99 Total: 16.64 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 4.35 Total: -34.63 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -4.20 Total: -76.32 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.24 Total: -8.43 kcal Total: -59.10 1.93 -57.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706673148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.675 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds