Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81391 * 103.00085 * 2 1 4 4 C 1.53781 * 113.61732 * 184.99905 * 3 2 1 5 5 C 1.53777 * 87.08589 * 219.93236 * 4 3 2 6 6 N 1.46902 * 113.61413 * 139.97472 * 5 4 3 7 7 C 1.46894 * 110.99783 * 56.05203 * 6 5 4 8 8 C 1.46902 * 110.99566 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46600 * 172.51857 * 8 6 5 10 10 C 1.50694 * 115.55154 * 305.14062 * 9 8 6 11 11 H 1.07996 * 119.99997 * 94.17538 * 10 9 8 12 12 C 1.37882 * 120.00319 * 274.17707 * 10 9 8 13 13 N 1.31508 * 119.99619 * 5.73358 * 12 10 9 14 14 Si 1.86796 * 120.00162 * 185.73236 * 12 10 9 15 15 H 1.48495 * 109.47313 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.47293 * 300.00233 * 14 12 10 17 17 H 1.48508 * 109.47036 * 59.99807 * 14 12 10 18 18 C 1.53003 * 117.50061 * 90.81626 * 9 8 6 19 19 C 1.53002 * 117.49601 * 159.47635 * 9 8 6 20 20 C 1.53780 * 113.69469 * 87.46579 * 3 2 1 21 21 H 1.08997 * 109.47253 * 300.00212 * 1 2 3 22 22 H 1.09002 * 109.46682 * 60.00346 * 1 2 3 23 23 H 1.09006 * 109.47359 * 179.97438 * 1 2 3 24 24 H 1.09004 * 112.84964 * 316.19251 * 3 2 1 25 25 H 1.09005 * 113.61659 * 105.37688 * 4 3 2 26 26 H 1.09002 * 113.69006 * 334.49428 * 4 3 2 27 27 H 1.09001 * 113.61683 * 270.80032 * 5 4 3 28 28 H 1.09005 * 109.47213 * 188.96546 * 7 6 5 29 29 H 1.09005 * 109.47184 * 308.96480 * 7 6 5 30 30 H 1.09005 * 109.47379 * 68.96474 * 7 6 5 31 31 H 1.09000 * 109.47330 * 52.52175 * 8 6 5 32 32 H 1.08997 * 109.47104 * 292.51387 * 8 6 5 33 33 H 0.97000 * 120.00364 * 355.12035 * 13 12 10 34 34 H 1.08996 * 117.49977 * 215.00110 * 18 9 8 35 35 H 1.09004 * 117.49902 * 0.02562 * 18 9 8 36 36 H 1.09001 * 117.50064 * 359.97083 * 19 9 8 37 37 H 1.08997 * 117.50191 * 144.97609 * 19 9 8 38 38 H 1.09002 * 113.61254 * 25.43725 * 20 3 2 39 39 H 1.09006 * 113.61166 * 254.54312 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7283 2.0519 -0.1228 5 6 3.5202 3.1752 0.9066 6 7 4.6023 3.2754 1.8951 7 6 5.9034 3.4488 1.2356 8 6 4.3455 4.3634 2.8482 9 6 5.3894 4.3191 3.9659 10 6 5.5066 3.0051 4.6942 11 1 6.2417 2.2782 4.3817 12 6 4.6753 2.7307 5.7594 13 7 3.7067 3.5645 6.0694 14 14 4.9247 1.1746 6.7622 15 1 3.9086 1.1141 7.8434 16 1 4.7807 -0.0113 5.8800 17 1 6.2838 1.1840 7.3609 18 6 6.6689 5.1350 3.7703 19 6 5.6117 5.5980 4.7759 20 6 2.3004 2.3836 1.4068 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6110 2.3429 -0.6954 25 1 4.0259 2.4118 -1.1077 26 1 4.3584 1.2394 0.2390 27 1 3.2654 4.1359 0.4591 28 1 6.6999 3.3609 1.9745 29 1 6.0292 2.6806 0.4725 30 1 5.9465 4.4336 0.7703 31 1 3.3500 4.2444 3.2759 32 1 4.4069 5.3211 2.3314 33 1 3.6206 4.4059 5.5946 34 1 7.5954 4.7212 4.1683 35 1 6.7668 5.7036 2.8455 36 1 5.0146 6.4710 4.5122 37 1 5.8424 5.4889 5.8356 38 1 2.5388 1.6610 2.1873 39 1 1.4450 3.0113 1.6568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707298520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = 46.989616 kcal Electronic energy + Delta-G solvation = -17574.270727 eV Core-core repulsion = 15030.583681 eV Total energy + Delta-G solvation = -2543.687046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10641 -37.01925 -33.81474 -31.68128 -28.96035 -27.28157 -25.71462 -25.06190 -24.57324 -22.00957 -21.23131 -19.22396 -19.08014 -16.56897 -16.43236 -15.48092 -14.87177 -14.39035 -14.11836 -13.66712 -13.61130 -13.53294 -13.29936 -12.74446 -12.45389 -12.25272 -12.11819 -11.79560 -11.55487 -10.97853 -10.92294 -10.78231 -10.64565 -10.52109 -10.35723 -10.09737 -10.00388 -9.73067 -9.34286 -8.38151 -8.32357 -8.17867 -7.59102 -7.46042 -6.17871 -3.87067 1.79780 2.65165 3.53205 3.55840 3.73061 4.54307 4.56506 4.65865 4.76618 4.99150 5.04154 5.09741 5.14512 5.25075 5.49233 5.54424 5.66195 5.77494 5.88648 5.97080 5.99455 6.07564 6.15612 6.19434 6.31264 6.37828 6.41010 6.50596 6.59986 6.69325 6.80778 6.92604 7.30207 7.35763 7.81704 7.94956 8.44603 8.60380 9.05156 9.83768 11.22020 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.006923 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.120566 B = 4043.306240 C = 4966.668102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.254 6.254 3 C -0.082 4.082 4 C -0.098 4.098 5 C 0.058 3.942 6 N -0.498 5.498 7 C 0.033 3.967 8 C 0.101 3.899 9 C 0.034 3.966 10 C -0.540 4.540 11 H 0.051 0.949 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 1.063 2.937 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.291 1.291 18 C -0.201 4.201 19 C -0.183 4.183 20 C -0.108 4.108 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.068 0.932 32 H -0.002 1.002 33 H 0.271 0.729 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 -1.790 -12.330 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.026 6.026 3 C -0.211 4.211 4 C -0.137 4.137 5 C -0.053 4.053 6 N -0.221 5.221 7 C -0.116 4.116 8 C -0.026 4.026 9 C 0.033 3.967 10 C -0.578 4.578 11 H 0.069 0.931 12 C -0.178 4.178 13 N -0.551 5.551 14 Si 0.892 3.108 15 H -0.211 1.211 16 H -0.214 1.214 17 H -0.218 1.218 18 C -0.238 4.238 19 C -0.221 4.221 20 C -0.148 4.148 21 H 0.096 0.904 22 H 0.090 0.910 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.016 0.984 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.543 -4.037 -10.829 12.088 hybrid contribution -0.288 2.869 -1.810 3.405 sum -3.831 -1.167 -12.639 13.259 Atomic orbital electron populations 1.23326 0.95059 1.06043 1.04697 1.86846 1.06576 1.11449 1.97696 1.24585 1.01129 0.93319 1.02083 1.22845 0.92839 0.99197 0.98796 1.23001 0.93699 0.95572 0.93055 1.62006 1.00139 1.46010 1.13916 1.22319 0.93110 0.97632 0.98512 1.21728 1.00495 0.88079 0.92347 1.19092 0.91264 0.92140 0.94236 1.21049 1.21978 1.00000 1.14789 0.93119 1.25614 0.92650 1.03387 0.96197 1.70734 1.29067 1.10661 1.44623 0.83635 0.75635 0.75331 0.76220 1.21137 1.21360 1.21813 1.22937 0.95246 1.06447 0.99164 1.22779 1.03098 0.99037 0.97159 1.23300 0.97190 0.99452 0.94837 0.90391 0.90994 0.88493 0.88379 0.91293 0.88167 0.92772 0.90331 0.92760 0.97412 0.91318 0.98352 0.91750 0.90314 0.92013 0.91928 0.89786 0.87204 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.76 101.05 1.09 -0.19 16 2 S -0.25 -3.51 22.18 -107.50 -2.38 -5.90 16 3 C -0.08 -1.10 4.27 -25.92 -0.11 -1.22 16 4 C -0.10 -1.38 6.03 -25.92 -0.16 -1.54 16 5 C 0.06 0.94 3.21 -66.90 -0.21 0.72 16 6 N -0.50 -9.83 4.43 -233.90 -1.04 -10.86 16 7 C 0.03 0.58 8.82 60.06 0.53 1.11 16 8 C 0.10 2.22 4.81 -3.82 -0.02 2.20 16 9 C 0.03 0.81 0.46 -155.66 -0.07 0.73 16 10 C -0.54 -14.73 8.53 -34.44 -0.29 -15.03 16 11 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 12 C 0.03 0.72 5.39 -17.82 -0.10 0.62 16 13 N -0.91 -26.87 13.56 55.43 0.75 -26.12 16 14 Si 1.06 25.47 29.91 -169.99 -5.08 20.38 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 C -0.20 -4.33 8.37 -26.69 -0.22 -4.55 16 19 C -0.18 -4.22 8.58 -26.69 -0.23 -4.45 16 20 C -0.11 -1.74 7.27 -25.92 -0.19 -1.93 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 23 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.10 1.57 7.89 -51.93 -0.41 1.16 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.54 6.47 -51.93 -0.34 1.20 16 29 H 0.05 0.85 6.76 -51.93 -0.35 0.50 16 30 H 0.01 0.13 8.11 -51.93 -0.42 -0.30 16 31 H 0.07 1.64 7.74 -51.93 -0.40 1.24 16 32 H 0.00 -0.03 8.06 -51.93 -0.42 -0.45 16 33 H 0.27 7.89 6.20 -40.82 -0.25 7.63 16 34 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 38 H 0.11 2.11 8.10 -51.93 -0.42 1.69 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -28.97 324.62 -9.72 -38.69 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.87 Total: 2.43 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 0.01 Total: -23.51 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.29 Total: -36.98 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.38 Total: -5.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.97 -9.72 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707298520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.677 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds