Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81391 * 103.00085 * 2 1 4 4 C 1.53781 * 113.61732 * 184.99905 * 3 2 1 5 5 C 1.53777 * 87.08589 * 219.93236 * 4 3 2 6 6 N 1.46902 * 113.61413 * 139.97472 * 5 4 3 7 7 C 1.46894 * 110.99783 * 56.05203 * 6 5 4 8 8 C 1.46902 * 110.99566 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46600 * 172.51857 * 8 6 5 10 10 C 1.50694 * 115.55154 * 305.14062 * 9 8 6 11 11 H 1.07996 * 119.99997 * 94.17538 * 10 9 8 12 12 C 1.37882 * 120.00319 * 274.17707 * 10 9 8 13 13 N 1.31508 * 119.99619 * 5.73358 * 12 10 9 14 14 Si 1.86796 * 120.00162 * 185.73236 * 12 10 9 15 15 H 1.48495 * 109.47313 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.47293 * 300.00233 * 14 12 10 17 17 H 1.48508 * 109.47036 * 59.99807 * 14 12 10 18 18 C 1.53003 * 117.50061 * 90.81626 * 9 8 6 19 19 C 1.53002 * 117.49601 * 159.47635 * 9 8 6 20 20 C 1.53780 * 113.69469 * 87.46579 * 3 2 1 21 21 H 1.08997 * 109.47253 * 300.00212 * 1 2 3 22 22 H 1.09002 * 109.46682 * 60.00346 * 1 2 3 23 23 H 1.09006 * 109.47359 * 179.97438 * 1 2 3 24 24 H 1.09004 * 112.84964 * 316.19251 * 3 2 1 25 25 H 1.09005 * 113.61659 * 105.37688 * 4 3 2 26 26 H 1.09002 * 113.69006 * 334.49428 * 4 3 2 27 27 H 1.09001 * 113.61683 * 270.80032 * 5 4 3 28 28 H 1.09005 * 109.47213 * 188.96546 * 7 6 5 29 29 H 1.09005 * 109.47184 * 308.96480 * 7 6 5 30 30 H 1.09005 * 109.47379 * 68.96474 * 7 6 5 31 31 H 1.09000 * 109.47330 * 52.52175 * 8 6 5 32 32 H 1.08997 * 109.47104 * 292.51387 * 8 6 5 33 33 H 0.97000 * 120.00364 * 355.12035 * 13 12 10 34 34 H 1.08996 * 117.49977 * 215.00110 * 18 9 8 35 35 H 1.09004 * 117.49902 * 0.02562 * 18 9 8 36 36 H 1.09001 * 117.50064 * 359.97083 * 19 9 8 37 37 H 1.08997 * 117.50191 * 144.97609 * 19 9 8 38 38 H 1.09002 * 113.61254 * 25.43725 * 20 3 2 39 39 H 1.09006 * 113.61166 * 254.54312 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7283 2.0519 -0.1228 5 6 3.5202 3.1752 0.9066 6 7 4.6023 3.2754 1.8951 7 6 5.9034 3.4488 1.2356 8 6 4.3455 4.3634 2.8482 9 6 5.3894 4.3191 3.9659 10 6 5.5066 3.0051 4.6942 11 1 6.2417 2.2782 4.3817 12 6 4.6753 2.7307 5.7594 13 7 3.7067 3.5645 6.0694 14 14 4.9247 1.1746 6.7622 15 1 3.9086 1.1141 7.8434 16 1 4.7807 -0.0113 5.8800 17 1 6.2838 1.1840 7.3609 18 6 6.6689 5.1350 3.7703 19 6 5.6117 5.5980 4.7759 20 6 2.3004 2.3836 1.4068 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6110 2.3429 -0.6954 25 1 4.0259 2.4118 -1.1077 26 1 4.3584 1.2394 0.2390 27 1 3.2654 4.1359 0.4591 28 1 6.6999 3.3609 1.9745 29 1 6.0292 2.6806 0.4725 30 1 5.9465 4.4336 0.7703 31 1 3.3500 4.2444 3.2759 32 1 4.4069 5.3211 2.3314 33 1 3.6206 4.4059 5.5946 34 1 7.5954 4.7212 4.1683 35 1 6.7668 5.7036 2.8455 36 1 5.0146 6.4710 4.5122 37 1 5.8424 5.4889 5.8356 38 1 2.5388 1.6610 2.1873 39 1 1.4450 3.0113 1.6568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707298520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = 31.396929 kcal Electronic energy + Delta-G solvation = -17574.946876 eV Core-core repulsion = 15030.583681 eV Total energy + Delta-G solvation = -2544.363195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46541 -38.72676 -35.35041 -33.77315 -29.80284 -28.80635 -27.28193 -26.50320 -26.29477 -23.43424 -23.03678 -21.11831 -20.38516 -18.41637 -17.79320 -16.66389 -16.15828 -16.11130 -15.59128 -15.50281 -15.06218 -14.71330 -14.33737 -14.21321 -14.10726 -13.78229 -13.44031 -13.15912 -12.96068 -12.75644 -12.58874 -12.46108 -12.20899 -12.09432 -11.93876 -11.79310 -11.30678 -11.15970 -10.77382 -10.36870 -10.32690 -10.13308 -8.98865 -8.63536 -8.38962 -6.07203 0.79733 1.56402 1.63525 1.67340 1.81315 2.65018 3.05668 3.35857 3.40007 3.45393 3.60119 3.75682 3.92520 4.19168 4.33729 4.34934 4.35375 4.37392 4.50811 4.56647 4.57368 4.65477 4.73838 4.80281 4.83767 4.87590 4.92167 4.96678 5.06771 5.07671 5.22128 5.34464 5.46803 5.57818 6.21175 6.37418 6.46893 6.47998 6.88788 7.68661 9.02174 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.006923 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.120566 B = 4043.306240 C = 4966.668102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.304 6.304 3 C -0.060 4.060 4 C -0.088 4.088 5 C 0.054 3.946 6 N -0.523 5.523 7 C 0.038 3.962 8 C 0.117 3.883 9 C 0.007 3.993 10 C -0.542 4.542 11 H 0.034 0.966 12 C -0.020 4.020 13 N -0.940 5.940 14 Si 1.100 2.900 15 H -0.289 1.289 16 H -0.280 1.280 17 H -0.276 1.276 18 C -0.173 4.173 19 C -0.187 4.187 20 C -0.113 4.113 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.126 0.874 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -1.641 -14.402 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.076 6.076 3 C -0.189 4.189 4 C -0.127 4.127 5 C -0.056 4.056 6 N -0.246 5.246 7 C -0.110 4.110 8 C -0.011 4.011 9 C 0.006 3.994 10 C -0.580 4.580 11 H 0.053 0.947 12 C -0.219 4.219 13 N -0.578 5.578 14 Si 0.925 3.075 15 H -0.214 1.214 16 H -0.206 1.206 17 H -0.202 1.202 18 C -0.210 4.210 19 C -0.225 4.225 20 C -0.154 4.154 21 H 0.094 0.906 22 H 0.111 0.889 23 H 0.129 0.871 24 H 0.143 0.857 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.674 -3.886 -12.918 13.981 hybrid contribution -0.246 2.809 -1.185 3.058 sum -3.920 -1.077 -14.102 14.677 Atomic orbital electron populations 1.23383 0.91573 1.07284 1.05580 1.87039 1.10542 1.12316 1.97725 1.24475 1.01164 0.92915 1.00316 1.22755 0.93093 0.97551 0.99277 1.23130 0.92583 0.96938 0.92978 1.61894 1.01994 1.45376 1.15343 1.22258 0.91356 0.99246 0.98171 1.21389 0.97936 0.89549 0.92260 1.19166 0.93689 0.91145 0.95356 1.21244 1.20886 1.01070 1.14781 0.94738 1.26696 0.92442 1.05327 0.97417 1.70826 1.30414 1.11059 1.45506 0.83125 0.76128 0.72985 0.75218 1.21434 1.20577 1.20221 1.22896 0.93899 1.04816 0.99434 1.22702 1.04363 0.99326 0.96085 1.23191 0.97561 0.99023 0.95611 0.90616 0.88934 0.87132 0.85652 0.88430 0.90075 0.91117 0.92623 0.90717 0.95864 0.94299 0.96910 0.92627 0.90734 0.89237 0.90271 0.92284 0.91130 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 10.76 113.37 1.22 -0.83 16 2 S -0.30 -8.05 22.18 -56.49 -1.25 -9.30 16 3 C -0.06 -1.49 4.27 31.12 0.13 -1.36 16 4 C -0.09 -2.29 6.03 31.12 0.19 -2.10 16 5 C 0.05 1.67 3.21 45.44 0.15 1.82 16 6 N -0.52 -20.24 4.43 -893.93 -3.96 -24.20 16 7 C 0.04 1.27 8.82 127.69 1.13 2.39 16 8 C 0.12 5.09 4.81 86.30 0.42 5.50 16 9 C 0.01 0.35 0.46 -52.93 -0.02 0.32 16 10 C -0.54 -30.04 8.53 25.60 0.22 -29.82 16 11 H 0.03 1.98 7.82 -2.91 -0.02 1.95 16 12 C -0.02 -1.14 5.39 84.66 0.46 -0.69 16 13 N -0.94 -56.55 13.56 21.45 0.29 -56.26 16 14 Si 1.10 52.12 29.91 68.60 2.05 54.17 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 C -0.17 -7.25 8.37 30.62 0.26 -7.00 16 19 C -0.19 -8.60 8.58 30.62 0.26 -8.33 16 20 C -0.11 -3.62 7.27 31.12 0.23 -3.39 16 21 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16 25 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.08 2.46 7.89 -2.39 -0.02 2.44 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.11 6.47 -2.38 -0.02 2.10 16 29 H 0.07 2.17 6.76 -2.38 -0.02 2.16 16 30 H 0.02 0.70 8.11 -2.38 -0.02 0.68 16 31 H 0.04 1.90 7.74 -2.39 -0.02 1.88 16 32 H 0.01 0.52 8.06 -2.39 -0.02 0.50 16 33 H 0.26 15.76 6.20 -92.71 -0.57 15.19 16 34 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.08 3.33 8.14 -2.39 -0.02 3.32 16 37 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 39 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -63.41 324.62 2.93 -60.48 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.18 Total: 18.59 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 4.62 Total: -43.48 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.67 Total: -80.47 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.25 Total: -9.30 kcal Total: -63.41 2.93 -60.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707298520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.878 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds