Wall clock time and date at job start Mon Mar 30 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47051 * 2 1 4 4 C 1.53005 * 109.46994 * 119.99113 * 2 1 3 5 5 C 1.50699 * 109.47169 * 179.97438 * 4 2 1 6 6 H 1.08007 * 119.99933 * 354.54628 * 5 4 2 7 7 C 1.37875 * 120.00277 * 174.54299 * 5 4 2 8 8 N 1.31513 * 119.99682 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46954 * 60.00652 * 9 7 5 11 11 H 1.48504 * 109.46979 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47583 * 300.00171 * 9 7 5 13 13 N 1.46894 * 109.47708 * 239.99609 * 2 1 3 14 14 C 1.47809 * 110.99662 * 272.44169 * 13 2 1 15 15 C 1.45868 * 112.91527 * 153.86416 * 14 13 2 16 16 C 1.54513 * 111.59139 * 61.32720 * 15 14 13 17 17 C 1.50461 * 108.84984 * 282.80425 * 16 15 14 18 18 C 1.54292 * 113.03204 * 92.15592 * 17 16 15 19 19 C 1.44272 * 111.00680 * 150.45819 * 13 2 1 20 20 H 1.09000 * 108.97577 * 98.66351 * 19 13 2 21 21 C 1.50700 * 108.97453 * 339.95484 * 19 13 2 22 22 O 1.20828 * 119.99709 * 302.79553 * 21 19 13 23 23 O 1.34231 * 120.00149 * 122.79665 * 21 19 13 24 24 H 1.08997 * 109.47400 * 295.06145 * 1 2 3 25 25 H 1.08998 * 109.46956 * 175.05770 * 1 2 3 26 26 H 1.09002 * 109.47081 * 55.06357 * 1 2 3 27 27 H 1.08998 * 109.47451 * 299.96789 * 4 2 1 28 28 H 1.09000 * 109.46658 * 59.96985 * 4 2 1 29 29 H 0.96998 * 120.00088 * 179.97438 * 8 7 5 30 30 H 1.09000 * 108.79088 * 274.74591 * 14 13 2 31 31 H 1.08994 * 108.79460 * 33.09003 * 14 13 2 32 32 H 1.08997 * 109.05323 * 181.86546 * 15 14 13 33 33 H 1.08991 * 109.05753 * 300.85123 * 15 14 13 34 34 H 1.09002 * 109.57224 * 42.61892 * 16 15 14 35 35 H 1.09000 * 109.56731 * 162.99337 * 16 15 14 36 36 H 1.08994 * 108.76643 * 213.06865 * 17 16 15 37 37 H 1.08993 * 108.77126 * 331.35719 * 17 16 15 38 38 H 1.09004 * 108.92302 * 79.02491 * 18 17 16 39 39 H 1.09004 * 108.91590 * 197.66922 * 18 17 16 40 40 H 0.96696 * 116.99874 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5470 -0.7217 1.2491 6 1 4.0870 -0.3335 0.3981 7 6 4.2364 -1.2176 2.3353 8 7 3.5788 -1.6905 3.3714 9 14 6.1043 -1.2189 2.3346 10 1 6.6002 0.1744 2.2007 11 1 6.5993 -1.8007 3.6081 12 1 6.5984 -2.0320 1.1944 13 7 2.0198 -0.6925 -1.1993 14 6 2.1409 -2.1460 -0.9592 15 6 2.0229 -2.9351 -2.1803 16 6 3.1387 -2.5885 -3.1914 17 6 2.7983 -1.2860 -3.8634 18 6 3.4058 -0.0611 -3.1485 19 6 3.2969 -0.1659 -1.6153 20 1 4.0870 -0.8207 -1.2477 21 6 3.4805 1.2046 -1.0160 22 8 2.6684 2.0725 -1.2329 23 8 4.5463 1.4611 -0.2413 24 1 -0.3634 0.4353 0.9309 25 1 -0.3633 -1.0238 -0.0885 26 1 -0.3633 0.5885 -0.8425 27 1 1.6771 -0.2068 2.1393 28 1 1.6761 -1.7486 1.2498 29 1 4.0638 -2.0398 4.1354 30 1 3.1106 -2.3469 -0.5037 31 1 1.3576 -2.4540 -0.2669 32 1 2.0878 -3.9934 -1.9277 33 1 1.0542 -2.7377 -2.6393 34 1 4.0893 -2.4915 -2.6671 35 1 3.2111 -3.3776 -3.9398 36 1 3.1683 -1.3130 -4.8883 37 1 1.7142 -1.1754 -3.8852 38 1 4.4573 0.0231 -3.4231 39 1 2.8819 0.8362 -3.4781 40 1 4.6212 2.3547 0.1203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709945043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:39 Heat of formation + Delta-G solvation = -71.861743 kcal Electronic energy + Delta-G solvation = -21435.806111 eV Core-core repulsion = 18444.212412 eV Total energy + Delta-G solvation = -2991.593698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79417 -38.21176 -35.58369 -35.23147 -32.50006 -32.23377 -30.55065 -27.43190 -25.93725 -25.48195 -23.03372 -21.72206 -20.95961 -19.39837 -18.49599 -17.71083 -16.66950 -16.36435 -15.29951 -14.86180 -14.56074 -14.35373 -13.80168 -13.73704 -13.49409 -12.92588 -12.52354 -12.27595 -12.01198 -11.78309 -11.54793 -11.36713 -11.28727 -11.08898 -11.01559 -10.64053 -10.56197 -10.39549 -10.22214 -10.10821 -9.91495 -9.73422 -9.62604 -9.18670 -8.88207 -8.35096 -7.45298 -6.02193 -4.03927 2.75231 3.30743 3.35715 3.39650 3.57988 4.44211 4.49666 5.11534 5.23232 5.33394 5.38102 5.52275 5.66852 5.73487 5.87689 5.91757 5.94454 6.07263 6.16266 6.19251 6.30773 6.38311 6.44675 6.51020 6.58782 6.65303 6.70119 6.73620 6.79447 6.92250 7.03239 7.10725 7.44765 7.59171 7.80273 8.00587 8.01952 8.35137 8.50432 9.03532 9.61123 11.08849 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.009783 C = 0.009629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.860731 B = 2861.418095 C = 2907.102796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.039 3.961 3 H 0.090 0.910 4 C -0.006 4.006 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.493 5.493 14 C 0.049 3.951 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.101 4.101 18 C -0.104 4.104 19 C 0.100 3.900 20 H 0.087 0.913 21 C 0.500 3.500 22 O -0.525 6.525 23 O -0.497 6.497 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.259 0.741 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 0.568 -11.105 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 H 0.108 0.892 4 C -0.044 4.044 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.203 1.203 13 N -0.219 5.219 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.157 4.157 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.011 4.011 20 H 0.105 0.895 21 C 0.344 3.656 22 O -0.415 6.415 23 O -0.306 6.306 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.794 0.413 -11.516 11.551 hybrid contribution 1.651 0.428 1.264 2.123 sum 0.857 0.841 -10.252 10.322 Atomic orbital electron populations 1.21638 0.95916 1.00724 1.00114 1.22668 0.94788 0.99615 0.89743 0.89212 1.19851 0.96330 0.96045 0.92204 1.21742 0.91422 1.40599 1.03434 0.90246 1.24950 0.97947 0.95358 0.95513 1.69975 1.35417 1.41383 1.06475 0.86745 0.86369 0.78490 0.76940 1.19994 1.21751 1.20340 1.62092 1.21942 1.03702 1.34138 1.21078 1.03666 0.86815 0.96245 1.20690 0.98711 0.98909 0.96722 1.21391 0.99311 0.96737 0.98282 1.21106 1.01801 0.93509 0.97411 1.21988 1.00302 0.99531 0.92446 1.21448 0.95161 0.89620 0.94865 0.89542 1.23383 0.77428 0.90880 0.73955 1.90628 1.43197 1.48279 1.59429 1.84774 1.46126 1.38608 1.61092 0.93296 0.93497 0.93512 0.96160 0.95958 0.93119 0.91578 0.90812 0.92228 0.92059 0.91954 0.92554 0.93080 0.91245 0.92196 0.91409 0.74460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.44 37.16 0.35 -2.04 16 2 C 0.04 0.83 2.15 -67.71 -0.15 0.68 16 3 H 0.09 2.06 3.89 -52.01 -0.20 1.85 16 4 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16 5 C -0.53 -13.79 6.36 -34.44 -0.22 -14.01 16 6 H 0.08 1.93 1.97 -52.48 -0.10 1.83 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.49 -9.36 4.05 -224.87 -0.91 -10.27 16 14 C 0.05 0.90 3.50 -6.70 -0.02 0.88 16 15 C -0.11 -1.66 5.53 -29.31 -0.16 -1.82 16 16 C -0.12 -1.61 5.60 -27.20 -0.15 -1.76 16 17 C -0.10 -1.34 5.42 -27.32 -0.15 -1.48 16 18 C -0.10 -1.57 5.51 -25.50 -0.14 -1.71 16 19 C 0.10 1.83 1.35 -69.71 -0.09 1.73 16 20 H 0.09 1.71 5.08 -51.93 -0.26 1.45 16 21 C 0.50 9.72 4.35 36.01 0.16 9.87 16 22 O -0.53 -10.98 15.55 -18.75 -0.29 -11.27 16 23 O -0.50 -9.17 11.26 -39.26 -0.44 -9.61 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.84 7.60 -51.93 -0.39 0.45 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.58 5.95 -51.93 -0.31 0.27 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.07 1.39 5.79 -51.93 -0.30 1.09 16 31 H 0.07 1.45 5.67 -51.93 -0.29 1.16 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.88 7.58 -51.93 -0.39 0.48 16 34 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.97 7.38 -51.93 -0.38 0.59 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.06 7.73 -51.93 -0.40 0.65 16 40 H 0.40 5.62 9.10 45.56 0.41 6.03 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -30.03 293.86 -7.39 -37.41 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.10 Total: 6.73 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.79 Total: -8.28 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.18 Total: -35.51 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.73 Total: -20.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.03 -7.39 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709945043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.450 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds