Wall clock time and date at job start Mon Mar 30 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47051 * 2 1 4 4 C 1.53005 * 109.46994 * 119.99113 * 2 1 3 5 5 C 1.50699 * 109.47169 * 179.97438 * 4 2 1 6 6 H 1.08007 * 119.99933 * 354.54628 * 5 4 2 7 7 C 1.37875 * 120.00277 * 174.54299 * 5 4 2 8 8 N 1.31513 * 119.99682 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46954 * 60.00652 * 9 7 5 11 11 H 1.48504 * 109.46979 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47583 * 300.00171 * 9 7 5 13 13 N 1.46894 * 109.47708 * 239.99609 * 2 1 3 14 14 C 1.47809 * 110.99662 * 272.44169 * 13 2 1 15 15 C 1.45868 * 112.91527 * 153.86416 * 14 13 2 16 16 C 1.54513 * 111.59139 * 61.32720 * 15 14 13 17 17 C 1.50461 * 108.84984 * 282.80425 * 16 15 14 18 18 C 1.54292 * 113.03204 * 92.15592 * 17 16 15 19 19 C 1.44272 * 111.00680 * 150.45819 * 13 2 1 20 20 H 1.09000 * 108.97577 * 98.66351 * 19 13 2 21 21 C 1.50700 * 108.97453 * 339.95484 * 19 13 2 22 22 O 1.20828 * 119.99709 * 302.79553 * 21 19 13 23 23 O 1.34231 * 120.00149 * 122.79665 * 21 19 13 24 24 H 1.08997 * 109.47400 * 295.06145 * 1 2 3 25 25 H 1.08998 * 109.46956 * 175.05770 * 1 2 3 26 26 H 1.09002 * 109.47081 * 55.06357 * 1 2 3 27 27 H 1.08998 * 109.47451 * 299.96789 * 4 2 1 28 28 H 1.09000 * 109.46658 * 59.96985 * 4 2 1 29 29 H 0.96998 * 120.00088 * 179.97438 * 8 7 5 30 30 H 1.09000 * 108.79088 * 274.74591 * 14 13 2 31 31 H 1.08994 * 108.79460 * 33.09003 * 14 13 2 32 32 H 1.08997 * 109.05323 * 181.86546 * 15 14 13 33 33 H 1.08991 * 109.05753 * 300.85123 * 15 14 13 34 34 H 1.09002 * 109.57224 * 42.61892 * 16 15 14 35 35 H 1.09000 * 109.56731 * 162.99337 * 16 15 14 36 36 H 1.08994 * 108.76643 * 213.06865 * 17 16 15 37 37 H 1.08993 * 108.77126 * 331.35719 * 17 16 15 38 38 H 1.09004 * 108.92302 * 79.02491 * 18 17 16 39 39 H 1.09004 * 108.91590 * 197.66922 * 18 17 16 40 40 H 0.96696 * 116.99874 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5470 -0.7217 1.2491 6 1 4.0870 -0.3335 0.3981 7 6 4.2364 -1.2176 2.3353 8 7 3.5788 -1.6905 3.3714 9 14 6.1043 -1.2189 2.3346 10 1 6.6002 0.1744 2.2007 11 1 6.5993 -1.8007 3.6081 12 1 6.5984 -2.0320 1.1944 13 7 2.0198 -0.6925 -1.1993 14 6 2.1409 -2.1460 -0.9592 15 6 2.0229 -2.9351 -2.1803 16 6 3.1387 -2.5885 -3.1914 17 6 2.7983 -1.2860 -3.8634 18 6 3.4058 -0.0611 -3.1485 19 6 3.2969 -0.1659 -1.6153 20 1 4.0870 -0.8207 -1.2477 21 6 3.4805 1.2046 -1.0160 22 8 2.6684 2.0725 -1.2329 23 8 4.5463 1.4611 -0.2413 24 1 -0.3634 0.4353 0.9309 25 1 -0.3633 -1.0238 -0.0885 26 1 -0.3633 0.5885 -0.8425 27 1 1.6771 -0.2068 2.1393 28 1 1.6761 -1.7486 1.2498 29 1 4.0638 -2.0398 4.1354 30 1 3.1106 -2.3469 -0.5037 31 1 1.3576 -2.4540 -0.2669 32 1 2.0878 -3.9934 -1.9277 33 1 1.0542 -2.7377 -2.6393 34 1 4.0893 -2.4915 -2.6671 35 1 3.2111 -3.3776 -3.9398 36 1 3.1683 -1.3130 -4.8883 37 1 1.7142 -1.1754 -3.8852 38 1 4.4573 0.0231 -3.4231 39 1 2.8819 0.8362 -3.4781 40 1 4.6212 2.3547 0.1203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709945043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:39 Heat of formation + Delta-G solvation = -91.829351 kcal Electronic energy + Delta-G solvation = -21436.671971 eV Core-core repulsion = 18444.212412 eV Total energy + Delta-G solvation = -2992.459559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.33618 -39.69424 -37.10241 -36.71346 -34.48274 -33.58613 -32.06042 -29.40357 -27.33545 -26.79810 -24.99690 -23.11954 -22.46172 -20.68463 -20.10596 -19.28755 -18.37445 -18.11571 -16.90640 -16.43779 -16.27359 -15.83121 -15.23475 -15.05686 -14.87374 -14.63393 -14.03069 -13.86348 -13.67086 -13.27823 -13.15620 -12.95811 -12.87006 -12.71524 -12.52431 -12.44456 -12.30550 -11.74381 -11.62157 -11.45846 -11.35379 -11.24112 -11.08749 -10.88424 -10.83693 -10.43392 -9.08902 -8.13374 -6.19688 1.21135 1.40846 1.42001 1.49678 2.16011 2.44232 2.98567 3.22572 3.91814 4.02555 4.10686 4.21876 4.33474 4.37015 4.49183 4.52969 4.59179 4.68491 4.74048 4.81471 4.95259 5.02042 5.10007 5.16285 5.22882 5.29165 5.33913 5.41799 5.44552 5.48235 5.53692 5.58374 5.68314 5.70832 5.87293 6.20764 6.28313 6.32443 6.94566 7.06902 7.48830 8.98617 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.009783 C = 0.009629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.860731 B = 2861.418095 C = 2907.102796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.043 3.957 3 H 0.078 0.922 4 C 0.003 3.997 5 C -0.531 4.531 6 H 0.097 0.903 7 C 0.008 3.992 8 N -0.935 5.935 9 Si 0.944 3.056 10 H -0.264 1.264 11 H -0.296 1.296 12 H -0.267 1.267 13 N -0.482 5.482 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.100 4.100 19 C 0.095 3.905 20 H 0.071 0.929 21 C 0.497 3.503 22 O -0.542 6.542 23 O -0.505 6.505 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.060 0.940 27 H -0.018 1.018 28 H 0.005 0.995 29 H 0.257 0.743 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 0.446 -13.558 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 H 0.096 0.904 4 C -0.035 4.035 5 C -0.568 4.568 6 H 0.115 0.885 7 C -0.189 4.189 8 N -0.577 5.577 9 Si 0.770 3.230 10 H -0.188 1.188 11 H -0.222 1.222 12 H -0.192 1.192 13 N -0.208 5.208 14 C -0.068 4.068 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.016 4.016 20 H 0.089 0.911 21 C 0.342 3.658 22 O -0.433 6.433 23 O -0.316 6.316 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.001 0.999 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 0.056 0.308 -13.988 13.992 hybrid contribution 1.373 0.492 2.055 2.521 sum 1.430 0.801 -11.933 12.045 Atomic orbital electron populations 1.21571 0.94133 1.01424 1.00651 1.22523 0.96376 0.98531 0.89041 0.90419 1.19741 0.96239 0.94980 0.92555 1.22164 0.92040 1.39067 1.03542 0.88534 1.25756 1.02346 0.95418 0.95376 1.70122 1.37088 1.43152 1.07298 0.85804 0.81232 0.79028 0.76912 1.18845 1.22199 1.19192 1.62269 1.22507 1.03832 1.32206 1.21023 1.01111 0.86868 0.97812 1.20659 1.00047 0.98758 0.95409 1.21383 0.97843 0.97823 0.98304 1.21112 1.01414 0.92333 0.98617 1.22017 1.01806 1.00432 0.89536 1.21633 0.94031 0.88585 0.97327 0.91082 1.23624 0.77250 0.91151 0.73752 1.90614 1.43741 1.48875 1.60096 1.84702 1.45772 1.40268 1.60894 0.93431 0.92845 0.92139 0.99925 0.97650 0.93435 0.94604 0.92804 0.91057 0.91054 0.93090 0.89756 0.90156 0.91790 0.90241 0.91802 0.72401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.44 71.98 0.68 -3.83 16 2 C 0.04 1.84 2.15 44.92 0.10 1.94 16 3 H 0.08 3.57 3.89 -3.73 -0.01 3.56 16 4 C 0.00 0.15 3.97 29.85 0.12 0.26 16 5 C -0.53 -27.79 6.36 25.60 0.16 -27.62 16 6 H 0.10 4.67 1.97 -2.91 -0.01 4.66 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.94 -55.97 13.29 21.45 0.28 -55.69 16 9 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.48 -17.99 4.05 -865.37 -3.51 -21.49 16 14 C 0.06 2.15 3.50 83.94 0.29 2.45 16 15 C -0.11 -3.05 5.53 28.92 0.16 -2.89 16 16 C -0.12 -2.74 5.60 30.29 0.17 -2.57 16 17 C -0.10 -2.23 5.42 30.21 0.16 -2.07 16 18 C -0.10 -2.73 5.51 31.39 0.17 -2.55 16 19 C 0.09 3.35 1.35 45.02 0.06 3.41 16 20 H 0.07 2.75 5.08 -2.39 -0.01 2.74 16 21 C 0.50 18.87 4.35 71.24 0.31 19.18 16 22 O -0.54 -22.15 15.55 21.96 0.34 -21.81 16 23 O -0.50 -18.06 11.26 -51.43 -0.58 -18.63 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 1.91 7.60 -2.39 -0.02 1.89 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H 0.01 0.29 5.95 -2.39 -0.01 0.28 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.04 1.52 5.79 -2.39 -0.01 1.51 16 31 H 0.05 2.15 5.67 -2.39 -0.01 2.14 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 34 H 0.05 1.34 7.15 -2.39 -0.02 1.32 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.57 7.38 -2.39 -0.02 1.55 16 38 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.06 1.82 7.73 -2.38 -0.02 1.80 16 40 H 0.42 11.23 9.10 -74.06 -0.67 10.56 16 Total: -1.00 -65.09 293.86 1.79 -63.30 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.38 Total: 22.30 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 2.85 Total: -13.36 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.22 Total: -77.18 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.24 Total: -40.45 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.09 1.79 -63.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709945043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.528 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds