Wall clock time and date at job start Mon Mar 30 2020 06:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47225 * 2 1 4 4 C 1.52997 * 109.46887 * 119.99945 * 2 1 3 5 5 C 1.50701 * 109.47213 * 185.00251 * 4 2 1 6 6 H 1.08008 * 120.00067 * 0.27880 * 5 4 2 7 7 C 1.37885 * 120.00287 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46938 * 60.00292 * 9 7 5 11 11 H 1.48495 * 109.46965 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47195 * 299.99961 * 9 7 5 13 13 N 1.46897 * 109.47595 * 239.99860 * 2 1 3 14 14 C 1.39774 * 111.00050 * 305.34554 * 13 2 1 15 15 C 1.54437 * 111.77090 * 189.12547 * 14 13 2 16 16 C 1.50753 * 109.02431 * 282.58603 * 15 14 13 17 17 C 1.54171 * 112.60712 * 93.01985 * 16 15 14 18 18 C 1.53825 * 111.97118 * 318.48509 * 17 16 15 19 19 C 1.47637 * 111.00004 * 74.23295 * 13 2 1 20 20 H 1.08995 * 109.74713 * 269.99057 * 19 13 2 21 21 C 1.50698 * 109.74217 * 30.70908 * 19 13 2 22 22 O 1.20822 * 120.00356 * 47.04470 * 21 19 13 23 23 O 1.34233 * 119.99789 * 227.03714 * 21 19 13 24 24 H 1.09008 * 109.46802 * 60.00564 * 1 2 3 25 25 H 1.09007 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47874 * 299.99867 * 1 2 3 27 27 H 1.08997 * 109.47326 * 65.00119 * 4 2 1 28 28 H 1.09002 * 109.47176 * 304.99790 * 4 2 1 29 29 H 0.96996 * 120.00052 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.01690 * 309.71219 * 14 13 2 31 31 H 1.09001 * 109.02719 * 68.60949 * 14 13 2 32 32 H 1.09003 * 109.54214 * 42.45555 * 15 14 13 33 33 H 1.09002 * 109.54540 * 162.63315 * 15 14 13 34 34 H 1.09000 * 108.85300 * 213.82034 * 16 15 14 35 35 H 1.08997 * 108.85366 * 332.21020 * 16 15 14 36 36 H 1.08999 * 108.98323 * 79.12979 * 17 16 15 37 37 H 1.09004 * 108.97852 * 197.84680 * 17 16 15 38 38 H 1.08996 * 109.04853 * 79.59420 * 18 17 16 39 39 H 1.08998 * 109.04984 * 198.56382 * 18 17 16 40 40 H 0.96703 * 116.99804 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3128 6 1 4.0785 -0.0819 0.5419 7 6 4.2302 -1.1926 2.3585 8 7 3.5761 -1.8361 3.3007 9 14 6.0918 -1.0601 2.4376 10 1 6.4841 0.3709 2.4970 11 1 6.5867 -1.7602 3.6501 12 1 6.6845 -1.6862 1.2286 13 7 2.0197 -0.6925 -1.1994 14 6 1.4750 -1.9762 -1.2941 15 6 2.1443 -2.8011 -2.4151 16 6 1.5970 -2.3551 -3.7471 17 6 2.4580 -1.2579 -4.4042 18 6 2.9330 -0.2103 -3.3829 19 6 1.8430 0.1444 -2.4027 20 1 0.8682 -0.0530 -2.8487 21 6 1.9477 1.6007 -2.0298 22 8 2.8532 1.9805 -1.3257 23 8 1.0351 2.4761 -2.4801 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.7515 -1.7715 1.2056 28 1 1.6052 -0.2617 2.1370 29 1 4.0604 -2.2422 4.0365 30 1 1.6126 -2.4915 -0.3434 31 1 0.4082 -1.8951 -1.5028 32 1 3.2222 -2.6412 -2.3916 33 1 1.9294 -3.8595 -2.2670 34 1 1.5521 -3.2150 -4.4153 35 1 0.5872 -1.9710 -3.6022 36 1 3.3288 -1.7210 -4.8683 37 1 1.8699 -0.7601 -5.1753 38 1 3.7875 -0.6087 -2.8359 39 1 3.2396 0.6908 -3.9140 40 1 1.1442 3.3996 -2.2146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709945045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:41 Heat of formation + Delta-G solvation = -85.267166 kcal Electronic energy + Delta-G solvation = -20874.633987 eV Core-core repulsion = 17882.458986 eV Total energy + Delta-G solvation = -2992.175001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79902 -38.62580 -35.90895 -35.42665 -32.60526 -32.11578 -30.47723 -27.32811 -26.24382 -25.44597 -23.06352 -22.46121 -20.97879 -19.21914 -18.77360 -17.85430 -16.68345 -16.16377 -15.64449 -15.20549 -14.52901 -14.36470 -14.28276 -14.08984 -13.73580 -13.03794 -12.70507 -12.38776 -12.18588 -11.83971 -11.70190 -11.63686 -11.45067 -11.32509 -10.99413 -10.79383 -10.59012 -10.50076 -10.34134 -10.18807 -10.04132 -9.98846 -9.59121 -9.11079 -8.85980 -8.17397 -7.46890 -5.81237 -3.77463 2.44649 3.16056 3.47638 3.49861 3.55467 4.35205 4.64278 4.93263 4.98272 5.10883 5.28329 5.33565 5.50602 5.55727 5.58641 5.68097 5.75775 5.87223 5.90569 5.96652 6.00064 6.09557 6.14694 6.23565 6.32417 6.41944 6.54290 6.59854 6.68441 6.72468 6.77159 7.03967 7.53161 7.71651 7.97364 8.08190 8.17503 8.22203 8.66775 9.30073 9.83774 11.30960 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.008047 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.052463 B = 3478.867656 C = 3780.281760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.063 3.937 3 H 0.090 0.910 4 C 0.035 3.965 5 C -0.484 4.484 6 H 0.064 0.936 7 C 0.049 3.951 8 N -0.907 5.907 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.505 5.505 14 C 0.073 3.927 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.109 4.109 19 C 0.109 3.891 20 H 0.068 0.932 21 C 0.477 3.523 22 O -0.480 6.480 23 O -0.524 6.524 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.013 0.987 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 2.409 -14.812 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.044 4.044 3 H 0.108 0.892 4 C -0.002 4.002 5 C -0.523 4.523 6 H 0.082 0.918 7 C -0.150 4.150 8 N -0.549 5.549 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.204 1.204 13 N -0.230 5.230 14 C -0.056 4.056 15 C -0.160 4.160 16 C -0.159 4.159 17 C -0.149 4.149 18 C -0.147 4.147 19 C 0.001 3.999 20 H 0.085 0.915 21 C 0.317 3.683 22 O -0.365 6.365 23 O -0.337 6.337 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -5.691 1.940 -14.535 15.730 hybrid contribution 0.207 0.762 0.263 0.832 sum -5.484 2.702 -14.272 15.526 Atomic orbital electron populations 1.22577 0.99719 1.01567 1.00744 1.22449 0.89963 1.00415 0.91564 0.89186 1.19176 0.96620 0.94990 0.89447 1.21185 0.91659 1.32293 1.07115 0.91751 1.24995 0.97931 0.96045 0.96000 1.69957 1.35201 1.37344 1.12368 0.86689 0.86542 0.77996 0.76907 1.20539 1.21812 1.20413 1.58944 1.62231 1.01575 1.00269 1.21086 0.94346 0.89436 1.00716 1.21532 1.02167 0.98824 0.93438 1.21463 0.99235 0.97868 0.97293 1.21874 0.99733 0.96066 0.97276 1.21390 0.98748 0.98754 0.95791 1.20907 1.00100 0.85035 0.93875 0.91471 1.23442 0.78913 0.89338 0.76584 1.90778 1.33215 1.79483 1.33010 1.84557 1.53678 1.23312 1.72107 0.94320 0.92544 0.92371 0.96250 0.96425 0.93407 0.88630 0.96883 0.90301 0.91737 0.92501 0.92632 0.91765 0.92524 0.88760 0.92248 0.73684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 8.45 37.15 0.31 -3.00 16 2 C 0.06 1.32 1.71 -67.72 -0.12 1.21 16 3 H 0.09 2.06 4.66 -51.93 -0.24 1.81 16 4 C 0.03 0.90 4.33 -27.88 -0.12 0.78 16 5 C -0.48 -13.96 8.84 -34.44 -0.30 -14.26 16 6 H 0.06 1.91 7.74 -52.48 -0.41 1.50 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.75 13.29 55.43 0.74 -27.02 16 9 Si 0.89 22.82 29.54 -169.99 -5.02 17.80 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.50 -9.52 3.53 -225.41 -0.80 -10.32 16 14 C 0.07 1.26 4.08 -6.74 -0.03 1.23 16 15 C -0.12 -1.75 5.65 -27.10 -0.15 -1.90 16 16 C -0.12 -1.43 5.31 -27.25 -0.14 -1.58 16 17 C -0.11 -1.28 5.91 -25.69 -0.15 -1.43 16 18 C -0.11 -1.54 4.97 -27.40 -0.14 -1.68 16 19 C 0.11 1.74 1.68 -69.55 -0.12 1.62 16 20 H 0.07 0.98 6.63 -51.93 -0.34 0.63 16 21 C 0.48 7.90 5.14 36.00 0.19 8.09 16 22 O -0.48 -9.82 15.69 -18.75 -0.29 -10.11 16 23 O -0.52 -6.71 13.42 -39.27 -0.53 -7.24 16 24 H 0.04 0.61 7.38 -51.92 -0.38 0.23 16 25 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.02 0.52 6.12 -51.93 -0.32 0.20 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.10 1.92 5.78 -51.92 -0.30 1.62 16 31 H 0.01 0.21 6.00 -51.93 -0.31 -0.10 16 32 H 0.08 1.25 7.11 -51.93 -0.37 0.88 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.55 7.26 -51.93 -0.38 1.17 16 39 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 40 H 0.40 3.46 9.10 45.56 0.41 3.88 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -32.72 304.12 -7.58 -40.30 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.39 Total: 1.57 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.87 Total: -9.58 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.06 Total: -37.33 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.82 Total: -17.35 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.72 -7.58 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709945045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.966 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds