Wall clock time and date at job start Mon Mar 30 2020 06:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 C 1.53004 * 109.46610 * 240.00212 * 2 1 3 5 5 C 1.50705 * 109.46714 * 179.34618 * 4 2 1 6 6 H 1.08000 * 120.00272 * 2.44392 * 5 4 2 7 7 C 1.37871 * 119.99947 * 182.44364 * 5 4 2 8 8 N 1.31517 * 120.00053 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47238 * 89.99990 * 9 7 5 11 11 H 1.48500 * 109.47419 * 210.00187 * 9 7 5 12 12 H 1.48506 * 109.46897 * 330.00459 * 9 7 5 13 13 N 1.46900 * 109.47224 * 120.00377 * 2 1 3 14 14 C 1.48557 * 111.00212 * 40.65284 * 13 2 1 15 15 C 1.54382 * 104.59596 * 200.96106 * 14 13 2 16 16 C 1.54258 * 105.05867 * 23.85266 * 15 14 13 17 17 C 1.48559 * 110.99932 * 285.23488 * 13 2 1 18 18 H 1.09007 * 110.40971 * 40.14256 * 17 13 2 19 19 C 1.53001 * 110.41176 * 277.82262 * 17 13 2 20 20 C 1.53005 * 109.47305 * 58.75087 * 19 17 13 21 21 C 1.50700 * 109.47086 * 173.63201 * 20 19 17 22 22 O 1.20826 * 119.99934 * 0.02562 * 21 20 19 23 23 O 1.34229 * 119.99876 * 179.97438 * 21 20 19 24 24 H 1.08993 * 109.47185 * 50.72959 * 1 2 3 25 25 H 1.08997 * 109.46935 * 170.73303 * 1 2 3 26 26 H 1.09005 * 109.46811 * 290.72891 * 1 2 3 27 27 H 1.08996 * 109.47226 * 299.34200 * 4 2 1 28 28 H 1.08998 * 109.47439 * 59.34532 * 4 2 1 29 29 H 0.97003 * 120.00032 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.41210 * 319.74133 * 14 13 2 31 31 H 1.08998 * 110.41144 * 82.18219 * 14 13 2 32 32 H 1.08997 * 110.32139 * 264.95962 * 15 14 13 33 33 H 1.09003 * 110.41158 * 142.79235 * 15 14 13 34 34 H 1.09001 * 110.32885 * 241.10387 * 16 15 14 35 35 H 1.09000 * 110.41002 * 118.94255 * 16 15 14 36 36 H 1.09001 * 109.47216 * 178.75135 * 19 17 13 37 37 H 1.09003 * 109.47067 * 298.75259 * 19 17 13 38 38 H 1.08999 * 109.46806 * 293.63005 * 20 19 17 39 39 H 1.08996 * 109.47099 * 53.62728 * 20 19 17 40 40 H 0.96703 * 117.00020 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5469 -0.7072 -1.2575 6 1 4.0873 -0.2664 -0.4329 7 6 4.2357 -1.2572 -2.3177 8 7 3.5776 -1.7936 -3.3221 9 14 6.1035 -1.2392 -2.3282 10 1 6.6141 -2.4730 -1.6784 11 1 6.5901 -1.1803 -3.7300 12 1 6.5913 -0.0500 -1.5845 13 7 2.0197 -0.6926 1.1994 14 6 1.2052 -1.9014 1.4860 15 6 1.4555 -2.1936 2.9811 16 6 1.8820 -0.8410 3.5879 17 6 1.8536 0.1545 2.4084 18 1 0.8996 0.6808 2.3757 19 6 3.0081 1.1519 2.5240 20 6 3.0511 2.0298 1.2716 21 6 4.0849 3.1114 1.4515 22 8 4.7223 3.1734 2.4761 23 8 4.2983 4.0052 0.4731 24 1 -0.3633 0.6504 -0.7955 25 1 -0.3633 -1.0142 -0.1655 26 1 -0.3633 0.3638 0.9612 27 1 1.6862 -1.7522 -1.2435 28 1 1.6670 -0.2142 -2.1393 29 1 4.0622 -2.1801 -4.0682 30 1 0.1488 -1.6986 1.3099 31 1 1.5395 -2.7390 0.8739 32 1 2.2529 -2.9279 3.0950 33 1 0.5420 -2.5507 3.4568 34 1 2.8888 -0.9114 3.9997 35 1 1.1783 -0.5324 4.3609 36 1 2.8596 1.7795 3.4027 37 1 3.9487 0.6093 2.6198 38 1 3.3117 1.4181 0.4079 39 1 2.0732 2.4845 1.1129 40 1 4.9713 4.6806 0.6347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709946055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:52 Heat of formation + Delta-G solvation = -90.961663 kcal Electronic energy + Delta-G solvation = -20332.379541 eV Core-core repulsion = 17339.957608 eV Total energy + Delta-G solvation = -2992.421933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14332 -39.16725 -35.95836 -34.29969 -33.23674 -32.18094 -28.57428 -28.20075 -27.31514 -24.40460 -23.23932 -21.87050 -20.30886 -19.88701 -18.76403 -17.76800 -16.52082 -16.16780 -15.94361 -15.53332 -14.65206 -14.42478 -14.23361 -13.40353 -13.17335 -12.99988 -12.77333 -12.48057 -12.04996 -11.76188 -11.74758 -11.33201 -11.25551 -11.13029 -10.93225 -10.86098 -10.80353 -10.53892 -10.49932 -10.36553 -10.32472 -10.06236 -9.69826 -9.14224 -8.86620 -8.24895 -7.59256 -5.88486 -3.86307 2.46558 3.31646 3.39827 3.45974 3.49674 4.53363 4.57729 4.88923 5.07320 5.25621 5.28637 5.37176 5.48927 5.54324 5.59452 5.73048 5.83279 5.86119 5.88446 5.97734 6.01568 6.06094 6.15467 6.24680 6.35488 6.43151 6.44830 6.56410 6.61609 6.69948 6.73637 6.99023 7.48400 7.59921 7.82806 7.99800 8.11932 8.13321 8.57911 9.19379 9.75738 11.23426 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.009701 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.976882 B = 2885.478046 C = 4110.157571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.087 0.913 4 C 0.035 3.965 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.886 3.114 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.473 5.473 14 C 0.028 3.972 15 C -0.123 4.123 16 C -0.116 4.116 17 C 0.053 3.947 18 H 0.047 0.953 19 C -0.085 4.085 20 C -0.132 4.132 21 C 0.482 3.518 22 O -0.528 6.528 23 O -0.516 6.516 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.257 0.743 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.098 0.902 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 5.932 10.757 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.058 4.058 3 H 0.105 0.895 4 C -0.002 4.002 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.543 5.543 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.197 5.197 14 C -0.100 4.100 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.056 4.056 18 H 0.065 0.935 19 C -0.123 4.123 20 C -0.169 4.169 21 C 0.325 3.675 22 O -0.417 6.417 23 O -0.327 6.327 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.163 0.837 39 H 0.116 0.884 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.566 5.435 10.680 12.824 hybrid contribution 0.626 0.567 0.033 0.846 sum -3.940 6.003 10.713 12.897 Atomic orbital electron populations 1.22516 0.99683 1.01727 1.00230 1.22589 0.90530 0.99786 0.92923 0.89511 1.19101 0.96280 0.95172 0.89661 1.21128 0.91350 1.36567 1.03684 0.92063 1.24981 0.97798 0.96047 0.95890 1.69961 1.35020 1.40252 1.09081 0.86693 0.86731 0.78341 0.76781 1.20932 1.21634 1.20065 1.65621 1.49707 1.03844 1.00525 1.23167 0.96325 0.95362 0.95124 1.22280 1.00678 0.97326 0.95876 1.22273 1.01620 0.94836 0.96697 1.22690 0.96421 0.94279 0.92168 0.93488 1.21321 0.99854 0.95940 0.95220 1.22046 0.96366 0.94094 1.04359 1.23899 0.82773 0.80925 0.79865 1.90667 1.48635 1.72929 1.29507 1.84614 1.59216 1.41959 1.46864 0.92694 0.92444 0.94071 0.96790 0.96253 0.93350 0.93514 0.89962 0.91378 0.92291 0.91132 0.92178 0.91589 0.90305 0.83660 0.88402 0.73909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 7.82 37.16 0.29 -2.66 16 2 C 0.05 0.93 1.66 -67.71 -0.11 0.82 16 3 H 0.09 1.58 3.67 -51.93 -0.19 1.39 16 4 C 0.04 0.85 4.52 -27.88 -0.13 0.73 16 5 C -0.49 -13.16 8.52 -34.44 -0.29 -13.45 16 6 H 0.06 1.63 6.45 -52.49 -0.34 1.29 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 N -0.47 -8.43 4.42 -214.24 -0.95 -9.38 16 14 C 0.03 0.46 5.66 -2.18 -0.01 0.45 16 15 C -0.12 -1.67 7.00 -25.35 -0.18 -1.84 16 16 C -0.12 -1.51 6.55 -25.35 -0.17 -1.68 16 17 C 0.05 0.78 2.48 -66.07 -0.16 0.62 16 18 H 0.05 0.66 6.48 -51.93 -0.34 0.32 16 19 C -0.09 -1.27 4.28 -26.73 -0.11 -1.39 16 20 C -0.13 -2.02 4.11 -27.88 -0.11 -2.14 16 21 C 0.48 7.53 8.33 36.01 0.30 7.83 16 22 O -0.53 -9.35 16.65 -18.75 -0.31 -9.66 16 23 O -0.52 -6.96 13.42 -39.25 -0.53 -7.48 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.94 6.60 -51.93 -0.34 0.60 16 26 H 0.04 0.58 6.52 -51.93 -0.34 0.24 16 27 H 0.01 0.37 7.70 -51.93 -0.40 -0.03 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.05 0.72 5.28 -51.93 -0.27 0.45 16 31 H 0.08 1.51 7.97 -51.93 -0.41 1.10 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.93 7.80 -51.93 -0.41 0.52 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.91 7.91 -51.93 -0.41 0.50 16 37 H 0.08 1.31 8.06 -51.93 -0.42 0.90 16 38 H 0.15 2.67 4.48 -51.93 -0.23 2.43 16 39 H 0.10 1.30 7.57 -51.93 -0.39 0.91 16 40 H 0.40 3.53 9.10 45.56 0.41 3.94 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -31.50 309.64 -7.52 -39.02 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.33 Total: 3.33 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.79 Total: -11.33 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.21 Total: -35.50 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.84 Total: -17.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.50 -7.52 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.939 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds