Wall clock time and date at job start Mon Mar 30 2020 06:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 C 1.53004 * 109.46610 * 240.00212 * 2 1 3 5 5 C 1.50705 * 109.46714 * 179.34618 * 4 2 1 6 6 H 1.08000 * 120.00272 * 2.44392 * 5 4 2 7 7 C 1.37871 * 119.99947 * 182.44364 * 5 4 2 8 8 N 1.31517 * 120.00053 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47238 * 89.99990 * 9 7 5 11 11 H 1.48500 * 109.47419 * 210.00187 * 9 7 5 12 12 H 1.48506 * 109.46897 * 330.00459 * 9 7 5 13 13 N 1.46900 * 109.47224 * 120.00377 * 2 1 3 14 14 C 1.48557 * 111.00212 * 40.65284 * 13 2 1 15 15 C 1.54382 * 104.59596 * 200.96106 * 14 13 2 16 16 C 1.54258 * 105.05867 * 23.85266 * 15 14 13 17 17 C 1.48559 * 110.99932 * 285.23488 * 13 2 1 18 18 H 1.09007 * 110.40971 * 40.14256 * 17 13 2 19 19 C 1.53001 * 110.41176 * 277.82262 * 17 13 2 20 20 C 1.53005 * 109.47305 * 58.75087 * 19 17 13 21 21 C 1.50700 * 109.47086 * 173.63201 * 20 19 17 22 22 O 1.20826 * 119.99934 * 0.02562 * 21 20 19 23 23 O 1.34229 * 119.99876 * 179.97438 * 21 20 19 24 24 H 1.08993 * 109.47185 * 50.72959 * 1 2 3 25 25 H 1.08997 * 109.46935 * 170.73303 * 1 2 3 26 26 H 1.09005 * 109.46811 * 290.72891 * 1 2 3 27 27 H 1.08996 * 109.47226 * 299.34200 * 4 2 1 28 28 H 1.08998 * 109.47439 * 59.34532 * 4 2 1 29 29 H 0.97003 * 120.00032 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.41210 * 319.74133 * 14 13 2 31 31 H 1.08998 * 110.41144 * 82.18219 * 14 13 2 32 32 H 1.08997 * 110.32139 * 264.95962 * 15 14 13 33 33 H 1.09003 * 110.41158 * 142.79235 * 15 14 13 34 34 H 1.09001 * 110.32885 * 241.10387 * 16 15 14 35 35 H 1.09000 * 110.41002 * 118.94255 * 16 15 14 36 36 H 1.09001 * 109.47216 * 178.75135 * 19 17 13 37 37 H 1.09003 * 109.47067 * 298.75259 * 19 17 13 38 38 H 1.08999 * 109.46806 * 293.63005 * 20 19 17 39 39 H 1.08996 * 109.47099 * 53.62728 * 20 19 17 40 40 H 0.96703 * 117.00020 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5469 -0.7072 -1.2575 6 1 4.0873 -0.2664 -0.4329 7 6 4.2357 -1.2572 -2.3177 8 7 3.5776 -1.7936 -3.3221 9 14 6.1035 -1.2392 -2.3282 10 1 6.6141 -2.4730 -1.6784 11 1 6.5901 -1.1803 -3.7300 12 1 6.5913 -0.0500 -1.5845 13 7 2.0197 -0.6926 1.1994 14 6 1.2052 -1.9014 1.4860 15 6 1.4555 -2.1936 2.9811 16 6 1.8820 -0.8410 3.5879 17 6 1.8536 0.1545 2.4084 18 1 0.8996 0.6808 2.3757 19 6 3.0081 1.1519 2.5240 20 6 3.0511 2.0298 1.2716 21 6 4.0849 3.1114 1.4515 22 8 4.7223 3.1734 2.4761 23 8 4.2983 4.0052 0.4731 24 1 -0.3633 0.6504 -0.7955 25 1 -0.3633 -1.0142 -0.1655 26 1 -0.3633 0.3638 0.9612 27 1 1.6862 -1.7522 -1.2435 28 1 1.6670 -0.2142 -2.1393 29 1 4.0622 -2.1801 -4.0682 30 1 0.1488 -1.6986 1.3099 31 1 1.5395 -2.7390 0.8739 32 1 2.2529 -2.9279 3.0950 33 1 0.5420 -2.5507 3.4568 34 1 2.8888 -0.9114 3.9997 35 1 1.1783 -0.5324 4.3609 36 1 2.8596 1.7795 3.4027 37 1 3.9487 0.6093 2.6198 38 1 3.3117 1.4181 0.4079 39 1 2.0732 2.4845 1.1129 40 1 4.9713 4.6806 0.6347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709946055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:51 Heat of formation + Delta-G solvation = -112.162250 kcal Electronic energy + Delta-G solvation = -20333.298868 eV Core-core repulsion = 17339.957608 eV Total energy + Delta-G solvation = -2993.341259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36622 -40.43720 -37.12896 -35.90422 -34.44674 -34.09708 -30.05938 -29.46150 -28.94619 -25.68686 -25.03322 -23.28765 -21.44047 -21.12171 -20.17215 -18.97457 -18.35916 -17.61482 -17.19399 -16.84459 -16.43072 -15.87972 -15.48958 -14.84000 -14.45074 -14.34842 -14.01112 -13.97141 -13.53167 -13.39850 -13.34352 -12.77402 -12.62454 -12.51738 -12.40013 -12.39414 -12.20984 -12.06004 -11.96940 -11.72301 -11.57903 -11.35349 -11.19659 -11.02352 -10.63385 -10.41140 -8.92781 -8.06691 -6.09468 1.24670 1.40612 1.41978 1.51211 2.23367 2.48015 3.22379 3.34296 3.73504 3.93218 4.08822 4.13821 4.27327 4.30538 4.41234 4.45004 4.55467 4.64919 4.69055 4.72951 4.89108 4.90612 4.98118 5.11815 5.16343 5.22374 5.24477 5.29591 5.30354 5.43854 5.50230 5.56165 5.66074 5.77927 5.94544 6.32473 6.40033 6.61268 7.04315 7.05869 7.56053 9.05581 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.009701 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.976882 B = 2885.478046 C = 4110.157571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.058 3.942 3 H 0.096 0.904 4 C 0.042 3.958 5 C -0.487 4.487 6 H 0.063 0.937 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.945 3.055 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.501 5.501 14 C 0.025 3.975 15 C -0.117 4.117 16 C -0.112 4.112 17 C 0.056 3.944 18 H 0.066 0.934 19 C -0.080 4.080 20 C -0.130 4.130 21 C 0.486 3.514 22 O -0.552 6.552 23 O -0.515 6.515 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.070 0.930 27 H -0.017 1.017 28 H -0.008 1.008 29 H 0.256 0.744 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 7.178 12.751 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.050 4.050 3 H 0.114 0.886 4 C 0.004 3.996 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.225 5.225 14 C -0.103 4.103 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.052 4.052 18 H 0.084 0.916 19 C -0.118 4.118 20 C -0.167 4.167 21 C 0.330 3.670 22 O -0.443 6.443 23 O -0.329 6.329 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.001 0.999 28 H 0.010 0.990 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -5.026 6.703 12.681 15.198 hybrid contribution 0.776 0.209 -0.612 1.010 sum -4.249 6.912 12.069 14.543 Atomic orbital electron populations 1.22407 0.97368 1.01575 1.02018 1.22304 0.92340 0.99247 0.91100 0.88641 1.18950 0.95080 0.93754 0.91778 1.21485 0.92837 1.35083 1.03108 0.91879 1.25765 1.02063 0.96235 0.95902 1.70088 1.36610 1.41741 1.09857 0.85741 0.81797 0.78424 0.76796 1.20808 1.21368 1.19219 1.65452 1.50719 1.04961 1.01393 1.23149 0.96615 0.93822 0.96664 1.22250 1.01745 0.97697 0.93804 1.22289 1.02348 0.93765 0.96566 1.22755 0.97026 0.94256 0.91155 0.91597 1.21276 0.98901 0.95911 0.95670 1.21973 0.97568 0.93894 1.03271 1.23882 0.82345 0.81052 0.79672 1.90660 1.49455 1.73705 1.30509 1.84567 1.59988 1.42241 1.46062 0.92286 0.93272 0.91142 0.99859 0.98952 0.93501 0.92303 0.93454 0.92174 0.89636 0.91497 0.89194 0.89853 0.92637 0.86693 0.86046 0.71502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.35 7.82 71.98 0.56 -4.79 16 2 C 0.06 2.16 1.66 44.92 0.07 2.24 16 3 H 0.10 3.38 3.67 -2.39 -0.01 3.37 16 4 C 0.04 2.10 4.52 29.85 0.13 2.23 16 5 C -0.49 -26.76 8.52 25.60 0.22 -26.54 16 6 H 0.06 3.39 6.45 -2.91 -0.02 3.38 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 9 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.50 -17.42 4.42 -831.71 -3.67 -21.10 16 14 C 0.03 0.81 5.66 86.45 0.49 1.30 16 15 C -0.12 -2.89 7.00 31.49 0.22 -2.67 16 16 C -0.11 -2.55 6.55 31.49 0.21 -2.34 16 17 C 0.06 1.50 2.48 45.06 0.11 1.61 16 18 H 0.07 1.54 6.48 -2.38 -0.02 1.53 16 19 C -0.08 -2.21 4.28 30.60 0.13 -2.08 16 20 C -0.13 -3.77 4.11 29.85 0.12 -3.65 16 21 C 0.49 14.35 8.33 71.24 0.59 14.94 16 22 O -0.55 -18.68 16.65 21.97 0.37 -18.31 16 23 O -0.52 -12.88 13.42 -51.41 -0.69 -13.57 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 1.57 6.60 -2.39 -0.02 1.56 16 26 H 0.07 1.74 6.52 -2.38 -0.02 1.73 16 27 H -0.02 -0.95 7.70 -2.39 -0.02 -0.97 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.06 1.72 5.28 -2.39 -0.01 1.71 16 31 H 0.05 1.81 7.97 -2.39 -0.02 1.79 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.59 7.80 -2.39 -0.02 1.57 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.04 7.91 -2.39 -0.02 2.02 16 37 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 38 H 0.12 4.15 4.48 -2.39 -0.01 4.14 16 39 H 0.12 2.89 7.57 -2.39 -0.02 2.87 16 40 H 0.42 6.49 9.10 -74.06 -0.67 5.81 16 Total: -1.00 -69.10 309.64 2.01 -67.09 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.37 Total: 14.94 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 3.33 Total: -19.50 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -3.39 Total: -78.42 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.32 Total: -31.88 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.10 2.01 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.074 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds