Wall clock time and date at job start Mon Mar 30 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46872 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47132 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46718 * 179.97438 * 12 11 10 14 14 C 1.49531 * 110.99873 * 290.00165 * 13 12 11 15 15 C 1.50886 * 104.80898 * 242.92040 * 14 13 12 16 16 H 1.08998 * 107.62814 * 80.52636 * 15 14 13 17 17 C 1.50856 * 123.39282 * 207.92012 * 15 14 13 18 18 S 1.84444 * 102.57556 * 153.25795 * 17 15 14 19 19 C 1.84770 * 97.02156 * 353.24000 * 18 17 15 20 20 C 1.52687 * 100.31495 * 335.39643 * 19 18 17 21 21 H 1.09004 * 110.85039 * 287.51715 * 20 19 18 22 22 C 1.49791 * 110.99211 * 170.00063 * 13 12 11 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 25 25 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 26 26 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 27 27 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 28 28 H 1.09007 * 109.46821 * 300.00444 * 11 10 9 29 29 H 1.09000 * 109.47186 * 60.00011 * 11 10 9 30 30 H 1.08996 * 109.46803 * 299.99471 * 12 11 10 31 31 H 1.08999 * 109.46956 * 59.99639 * 12 11 10 32 32 H 1.09000 * 110.37537 * 1.75707 * 14 13 12 33 33 H 1.09003 * 110.36566 * 124.09004 * 14 13 12 34 34 H 1.09004 * 110.79043 * 34.98514 * 17 15 14 35 35 H 1.08996 * 110.95306 * 271.60424 * 17 15 14 36 36 H 1.09007 * 111.24480 * 217.63115 * 19 18 17 37 37 H 1.09003 * 111.24429 * 93.16100 * 19 18 17 38 38 H 1.09000 * 110.78700 * 266.03450 * 22 13 12 39 39 H 1.08990 * 110.79395 * 29.30251 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6365 0.0012 12 6 6.0617 -4.0790 0.0004 13 7 7.5307 -4.0788 0.0010 14 6 8.0670 -3.6004 -1.3103 15 6 8.8255 -4.7786 -1.8698 16 1 8.0992 -5.4545 -2.3212 17 6 9.9979 -4.6411 -2.8091 18 16 10.9589 -6.1807 -2.4799 19 6 9.9494 -6.7760 -1.0514 20 6 9.3616 -5.4544 -0.5624 21 1 10.1237 -4.8487 -0.0718 22 6 8.0674 -5.4562 0.2431 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6796 -0.8894 25 1 3.8746 -0.6807 0.8905 26 1 3.6580 -3.1505 0.8896 27 1 3.6587 -3.1500 -0.8904 28 1 5.9156 -2.1222 -0.8884 29 1 5.9142 -2.1230 0.8916 30 1 5.6977 -4.5934 0.8897 31 1 5.6990 -4.5921 -0.8903 32 1 7.2497 -3.3242 -1.9766 33 1 8.7375 -2.7542 -1.1599 34 1 10.5876 -3.7574 -2.5650 35 1 9.6646 -4.6075 -3.8462 36 1 10.5775 -7.2353 -0.2881 37 1 9.1660 -7.4594 -1.3790 38 1 8.2713 -5.6111 1.3025 39 1 7.3766 -6.2118 -0.1308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712480043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:27 Heat of formation + Delta-G solvation = -6.493929 kcal Electronic energy + Delta-G solvation = -16682.807910 eV Core-core repulsion = 14136.801644 eV Total energy + Delta-G solvation = -2546.006266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16177 -35.81061 -33.77397 -32.07474 -31.28935 -29.28760 -26.96452 -26.25096 -23.64086 -21.60739 -20.98622 -20.19982 -19.89737 -16.85734 -16.64230 -16.58990 -15.67370 -15.06056 -14.77811 -14.42981 -14.13417 -13.56154 -13.35938 -12.95551 -12.83554 -12.61755 -12.37861 -11.94676 -11.83288 -11.72922 -11.63107 -11.30923 -11.06047 -11.03736 -10.77341 -10.51188 -10.15945 -9.88471 -9.67506 -9.48718 -9.14804 -8.52270 -8.48835 -8.10274 -6.02911 -4.00595 1.39546 1.86101 3.32092 3.39197 3.43459 3.60608 3.91950 4.11569 4.46893 4.53693 4.65740 4.75275 4.80073 4.90928 5.10228 5.16496 5.20515 5.27045 5.31413 5.34626 5.41722 5.44438 5.62574 5.73224 5.76888 5.86409 5.99643 6.06111 6.33831 6.60371 6.72161 6.75265 6.85739 7.03074 7.34365 7.47315 7.82208 8.56198 9.02306 9.60123 11.10751 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049170 B = 0.003306 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.318697 B = 8468.667021 C = 8729.087939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.102 4.102 11 C -0.115 4.115 12 C 0.048 3.952 13 N -0.524 5.524 14 C 0.059 3.941 15 C -0.134 4.134 16 H 0.076 0.924 17 C -0.044 4.044 18 S -0.309 6.309 19 C -0.050 4.050 20 C -0.113 4.113 21 H 0.102 0.898 22 C 0.055 3.945 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.485 -12.057 -2.727 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.153 4.153 12 C -0.079 4.079 13 N -0.248 5.248 14 C -0.070 4.070 15 C -0.155 4.155 16 H 0.094 0.906 17 C -0.192 4.192 18 S -0.081 6.081 19 C -0.198 4.198 20 C -0.133 4.133 21 H 0.121 0.879 22 C -0.074 4.074 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.476 -12.091 -2.893 25.686 hybrid contribution -0.977 0.788 -0.171 1.267 sum 21.499 -11.303 -3.065 24.482 Atomic orbital electron populations 1.69921 1.06329 1.26848 1.51411 1.25052 0.94736 0.99235 0.94619 0.86758 0.80336 0.83548 0.78519 1.20288 1.21448 1.19008 1.21191 0.89705 0.94391 1.50542 0.91153 1.19562 0.96929 0.92443 0.96149 1.21428 0.91838 0.99837 1.00884 1.21685 0.97248 0.94290 1.02071 1.22413 0.85833 0.98965 1.00726 1.65008 1.09102 1.20910 1.29777 1.22330 0.98567 0.96179 0.89969 1.22409 0.97497 1.00422 0.95147 0.90578 1.23135 0.97028 0.96754 1.02294 1.88038 1.45586 1.29957 1.44542 1.23711 1.00693 0.98775 0.96618 1.22926 0.98623 0.95255 0.96544 0.87944 1.22709 0.93627 0.90514 1.00592 0.92788 0.96791 0.97074 0.92848 0.93110 0.92642 0.91614 0.90696 0.94783 0.91041 0.89908 0.88510 0.88240 0.87613 0.88925 0.89444 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 11 C -0.12 -1.80 5.25 -26.73 -0.14 -1.94 16 12 C 0.05 0.62 4.60 -3.82 -0.02 0.61 16 13 N -0.52 -5.95 5.26 -231.43 -1.22 -7.16 16 14 C 0.06 0.59 6.15 -3.42 -0.02 0.57 16 15 C -0.13 -1.15 2.29 -90.80 -0.21 -1.36 16 16 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 17 C -0.04 -0.35 7.21 36.08 0.26 -0.09 16 18 S -0.31 -2.93 23.30 -107.50 -2.50 -5.43 16 19 C -0.05 -0.37 7.10 37.00 0.26 -0.11 16 20 C -0.11 -0.92 2.90 -89.11 -0.26 -1.17 16 21 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 22 C 0.05 0.49 6.37 -2.49 -0.02 0.48 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.86 7.03 -51.93 -0.37 0.49 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.03 0.43 8.04 -51.93 -0.42 0.02 16 32 H 0.07 0.77 6.84 -51.93 -0.36 0.42 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -30.83 315.36 -10.65 -41.48 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.97 Total: -4.31 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.82 Total: -19.14 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.44 Total: -34.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.50 Total: -5.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.83 -10.65 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712480043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.990 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds