Wall clock time and date at job start Mon Mar 30 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46872 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47132 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46718 * 179.97438 * 12 11 10 14 14 C 1.49531 * 110.99873 * 290.00165 * 13 12 11 15 15 C 1.50886 * 104.80898 * 242.92040 * 14 13 12 16 16 H 1.08998 * 107.62814 * 80.52636 * 15 14 13 17 17 C 1.50856 * 123.39282 * 207.92012 * 15 14 13 18 18 S 1.84444 * 102.57556 * 153.25795 * 17 15 14 19 19 C 1.84770 * 97.02156 * 353.24000 * 18 17 15 20 20 C 1.52687 * 100.31495 * 335.39643 * 19 18 17 21 21 H 1.09004 * 110.85039 * 287.51715 * 20 19 18 22 22 C 1.49791 * 110.99211 * 170.00063 * 13 12 11 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 25 25 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 26 26 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 27 27 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 28 28 H 1.09007 * 109.46821 * 300.00444 * 11 10 9 29 29 H 1.09000 * 109.47186 * 60.00011 * 11 10 9 30 30 H 1.08996 * 109.46803 * 299.99471 * 12 11 10 31 31 H 1.08999 * 109.46956 * 59.99639 * 12 11 10 32 32 H 1.09000 * 110.37537 * 1.75707 * 14 13 12 33 33 H 1.09003 * 110.36566 * 124.09004 * 14 13 12 34 34 H 1.09004 * 110.79043 * 34.98514 * 17 15 14 35 35 H 1.08996 * 110.95306 * 271.60424 * 17 15 14 36 36 H 1.09007 * 111.24480 * 217.63115 * 19 18 17 37 37 H 1.09003 * 111.24429 * 93.16100 * 19 18 17 38 38 H 1.09000 * 110.78700 * 266.03450 * 22 13 12 39 39 H 1.08990 * 110.79395 * 29.30251 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6365 0.0012 12 6 6.0617 -4.0790 0.0004 13 7 7.5307 -4.0788 0.0010 14 6 8.0670 -3.6004 -1.3103 15 6 8.8255 -4.7786 -1.8698 16 1 8.0992 -5.4545 -2.3212 17 6 9.9979 -4.6411 -2.8091 18 16 10.9589 -6.1807 -2.4799 19 6 9.9494 -6.7760 -1.0514 20 6 9.3616 -5.4544 -0.5624 21 1 10.1237 -4.8487 -0.0718 22 6 8.0674 -5.4562 0.2431 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6796 -0.8894 25 1 3.8746 -0.6807 0.8905 26 1 3.6580 -3.1505 0.8896 27 1 3.6587 -3.1500 -0.8904 28 1 5.9156 -2.1222 -0.8884 29 1 5.9142 -2.1230 0.8916 30 1 5.6977 -4.5934 0.8897 31 1 5.6990 -4.5921 -0.8903 32 1 7.2497 -3.3242 -1.9766 33 1 8.7375 -2.7542 -1.1599 34 1 10.5876 -3.7574 -2.5650 35 1 9.6646 -4.6075 -3.8462 36 1 10.5775 -7.2353 -0.2881 37 1 9.1660 -7.4594 -1.3790 38 1 8.2713 -5.6111 1.3025 39 1 7.3766 -6.2118 -0.1308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712480043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:27 Heat of formation + Delta-G solvation = -25.005459 kcal Electronic energy + Delta-G solvation = -16683.610630 eV Core-core repulsion = 14136.801644 eV Total energy + Delta-G solvation = -2546.808986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91984 -37.08491 -35.30807 -33.85823 -31.97561 -30.78558 -27.75275 -27.48915 -25.03244 -22.76094 -21.86869 -21.62344 -20.87709 -18.84335 -17.62102 -17.31036 -16.54473 -16.30448 -16.21165 -15.46334 -15.24625 -14.80528 -14.53722 -14.34173 -13.97296 -13.64797 -13.37766 -13.14982 -13.12250 -12.87681 -12.58571 -12.52630 -12.29919 -12.04954 -11.83033 -11.75012 -11.73997 -11.37479 -11.29970 -11.18609 -10.81324 -10.76247 -9.34145 -8.82021 -8.29722 -6.33825 0.75228 1.22111 1.36316 1.37936 1.50453 2.36644 2.78227 3.05813 3.24809 3.44790 3.85179 3.95128 4.06589 4.12144 4.15389 4.17206 4.33300 4.42097 4.50150 4.53658 4.61849 4.65213 4.69975 4.76818 4.78653 4.89337 4.91471 5.03626 5.13393 5.17205 5.21501 5.27320 5.58432 5.64500 5.68886 5.84327 6.02325 6.29406 6.74755 7.31191 8.87346 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049170 B = 0.003306 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.318697 B = 8468.667021 C = 8729.087939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.095 4.095 11 C -0.103 4.103 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.058 3.942 15 C -0.128 4.128 16 H 0.071 0.929 17 C -0.034 4.034 18 S -0.354 6.354 19 C -0.036 4.036 20 C -0.103 4.103 21 H 0.099 0.901 22 C 0.056 3.944 23 H 0.266 0.734 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.687 -11.733 -2.611 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.133 4.133 11 C -0.141 4.141 12 C -0.071 4.071 13 N -0.259 5.259 14 C -0.071 4.071 15 C -0.148 4.148 16 H 0.089 0.911 17 C -0.182 4.182 18 S -0.126 6.126 19 C -0.184 4.184 20 C -0.124 4.124 21 H 0.118 0.882 22 C -0.072 4.072 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 24.699 -11.790 -2.778 27.509 hybrid contribution -1.732 0.611 -0.200 1.847 sum 22.968 -11.179 -2.978 25.717 Atomic orbital electron populations 1.70078 1.08377 1.28183 1.52858 1.26082 0.95656 1.03733 0.94120 0.85607 0.79473 0.77994 0.79264 1.19110 1.20948 1.16916 1.21582 0.92465 0.93025 1.50214 0.95188 1.19537 0.93545 0.95508 0.96351 1.21296 0.94753 0.96824 1.00445 1.21498 0.94035 0.96404 1.02149 1.22208 0.87082 0.96874 1.00941 1.64965 1.07867 1.22543 1.30520 1.22317 0.98498 0.96786 0.89459 1.22314 0.97415 0.99648 0.95462 0.91068 1.23120 0.96489 0.96034 1.02557 1.88218 1.46955 1.31365 1.46062 1.23729 1.00534 0.98454 0.95714 1.22827 0.98093 0.95527 0.95930 0.88231 1.22745 0.93871 0.89337 1.01281 0.92509 0.96365 0.96471 0.93370 0.93612 0.92240 0.91789 0.90471 0.94687 0.91743 0.89606 0.87829 0.87608 0.86194 0.88235 0.88629 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 2 C 0.00 0.02 5.47 84.65 0.46 0.49 16 3 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.53 -31.47 9.66 25.60 0.25 -31.22 16 8 H 0.03 1.93 7.99 -2.92 -0.02 1.91 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.10 -3.03 5.25 30.59 0.16 -2.87 16 12 C 0.06 1.36 4.60 86.30 0.40 1.76 16 13 N -0.53 -10.93 5.26 -886.11 -4.66 -15.59 16 14 C 0.06 1.06 6.15 85.10 0.52 1.58 16 15 C -0.13 -1.93 2.29 -10.91 -0.02 -1.96 16 16 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 17 C -0.03 -0.49 7.21 71.29 0.51 0.03 16 18 S -0.35 -6.18 23.30 -56.49 -1.32 -7.49 16 19 C -0.04 -0.46 7.10 71.88 0.51 0.05 16 20 C -0.10 -1.43 2.90 -9.81 -0.03 -1.46 16 21 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 22 C 0.06 0.87 6.37 85.55 0.55 1.42 16 23 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 24 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 25 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.71 7.03 -2.38 -0.02 1.69 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 31 H 0.03 0.83 8.04 -2.39 -0.02 0.81 16 32 H 0.06 1.27 6.84 -2.39 -0.02 1.25 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 0.87 7.88 -2.39 -0.02 0.85 16 Total: -1.00 -66.54 315.36 0.72 -65.82 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.93 Total: 7.20 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.59 Total: -36.09 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -4.36 Total: -76.10 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -1.32 Total: -7.49 kcal Total: -66.54 0.72 -65.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712480043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.813 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds