Wall clock time and date at job start Mon Mar 30 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.42906 * 113.99632 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.48092 * 329.99479 * 14 13 12 16 16 C 1.52966 * 109.48001 * 209.97366 * 14 13 12 17 17 C 1.52958 * 109.81858 * 176.42288 * 16 14 13 18 18 C 1.53234 * 109.40524 * 63.59364 * 17 16 14 19 19 C 1.51272 * 108.53397 * 305.37473 * 18 17 16 20 20 N 1.27954 * 120.84841 * 231.35504 * 19 18 17 21 21 O 1.41603 * 119.99954 * 0.02562 * 20 19 18 22 22 C 1.51265 * 118.31369 * 51.34256 * 19 18 17 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 29 29 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 31 31 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 32 32 H 1.08998 * 109.41004 * 296.52579 * 16 14 13 33 33 H 1.08999 * 109.41430 * 56.31087 * 16 14 13 34 34 H 1.08996 * 109.48585 * 183.57879 * 17 16 14 35 35 H 1.09009 * 109.47835 * 303.60605 * 17 16 14 36 36 H 1.09003 * 109.62272 * 65.08925 * 18 17 16 37 37 H 1.08999 * 109.62489 * 185.65978 * 18 17 16 38 38 H 0.96704 * 113.99732 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.63975 * 188.95047 * 22 19 18 40 40 H 1.09002 * 109.61821 * 68.37592 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 8 1.7597 -7.3876 0.0005 14 6 2.5997 -8.5437 0.0005 15 1 3.5333 -8.3147 -0.5134 16 6 1.8889 -9.6907 -0.7199 17 6 2.8156 -10.9047 -0.8027 18 6 3.1234 -11.4076 0.6117 19 6 3.6757 -10.2558 1.4220 20 7 4.7716 -10.3764 2.0713 21 8 5.4842 -11.5996 2.0366 22 6 2.8996 -8.9576 1.4451 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 0.8537 -5.0445 0.8914 29 1 0.8532 -5.0451 -0.8886 30 1 3.1003 -6.0924 -0.8899 31 1 3.1016 -6.0923 0.8901 32 1 0.9870 -9.9602 -0.1703 33 1 1.6170 -9.3730 -1.7266 34 1 2.3282 -11.6961 -1.3719 35 1 3.7443 -10.6200 -1.2976 36 1 2.2089 -11.7767 1.0760 37 1 3.8615 -12.2082 0.5630 38 1 6.2990 -11.5950 2.5574 39 1 3.4938 -8.1841 1.9317 40 1 1.9644 -9.0999 1.9868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712761245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:58 Heat of formation + Delta-G solvation = -79.113785 kcal Electronic energy + Delta-G solvation = -18358.593081 eV Core-core repulsion = 15366.684911 eV Total energy + Delta-G solvation = -2991.908170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56560 -37.63271 -36.02790 -34.51274 -32.85421 -32.31448 -30.50632 -28.50609 -27.50226 -24.79999 -22.97223 -21.83138 -21.45645 -20.03026 -19.46564 -17.45748 -16.59776 -16.22759 -15.93077 -15.74046 -14.86559 -14.74824 -14.44661 -14.26399 -14.04191 -13.37545 -13.10009 -12.90864 -12.82115 -12.43863 -11.94731 -11.76351 -11.43739 -11.33705 -11.14157 -11.05030 -10.80889 -10.72702 -10.48997 -10.38972 -10.02017 -9.91430 -9.65688 -9.40702 -9.29912 -9.01705 -8.32737 -5.97614 -3.99872 1.69869 2.72321 3.32390 3.39682 3.43864 3.62281 4.22019 4.48012 4.51633 4.60707 4.68706 4.78643 4.91439 5.16994 5.20925 5.32131 5.37301 5.39077 5.45046 5.54346 5.59794 5.68550 5.76868 5.85408 5.92397 5.97182 6.12436 6.17981 6.47068 6.49130 6.79459 6.93204 7.10861 7.32902 7.43377 7.71330 7.86085 8.03283 8.45599 9.07767 9.64078 11.13820 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.041212 B = 0.002875 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.257799 B = 9735.439717 C =10179.704985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.060 3.940 13 O -0.377 6.377 14 C 0.097 3.903 15 H 0.063 0.937 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.142 3.858 20 N -0.339 5.339 21 O -0.418 6.418 22 C -0.089 4.089 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.401 0.599 39 H 0.087 0.913 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -23.822 0.667 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.016 4.016 13 O -0.296 6.296 14 C 0.037 3.963 15 H 0.081 0.919 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.052 4.052 20 N -0.081 5.081 21 O -0.324 6.324 22 C -0.128 4.128 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.249 0.751 39 H 0.105 0.895 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.403 -23.469 0.884 24.343 hybrid contribution 0.910 0.465 0.004 1.022 sum 7.313 -23.004 0.889 24.155 Atomic orbital electron populations 1.69979 1.06052 1.26442 1.51039 1.25036 0.94851 0.99265 0.95410 0.86549 0.80112 0.83852 0.77563 1.19757 1.21031 1.21022 1.21316 0.93064 0.91150 1.50309 0.92676 1.19095 0.93998 0.91193 0.97335 1.21579 0.99193 0.93486 1.00317 1.21641 0.98071 0.92860 1.02814 1.22797 0.95473 0.83485 0.99807 1.87960 1.33532 1.13299 1.94796 1.21958 0.94208 0.86949 0.93167 0.91867 1.21633 0.99069 0.93423 1.01733 1.21481 1.00058 0.97734 0.95536 1.21316 1.02294 0.96463 0.95817 1.25249 0.91154 0.97074 0.91681 1.76110 1.07913 1.04598 1.19519 1.88407 1.40961 1.28992 1.74041 1.21203 0.99878 0.92073 0.99603 0.93077 0.96513 0.96532 0.93345 0.93331 0.91624 0.91648 0.93480 0.93488 0.90522 0.90394 0.90445 0.91610 0.89396 0.89737 0.75084 0.89453 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.22 5.15 -26.74 -0.14 -2.36 16 11 C -0.12 -2.01 5.58 -26.74 -0.15 -2.16 16 12 C 0.06 0.87 5.75 37.16 0.21 1.08 16 13 O -0.38 -5.12 9.99 -35.23 -0.35 -5.47 16 14 C 0.10 1.02 2.62 -26.63 -0.07 0.95 16 15 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 16 C -0.12 -1.04 5.46 -26.77 -0.15 -1.18 16 17 C -0.11 -0.80 5.94 -26.63 -0.16 -0.96 16 18 C -0.12 -0.99 5.95 -27.48 -0.16 -1.15 16 19 C 0.14 1.45 6.54 -78.38 -0.51 0.94 16 20 N -0.34 -3.90 12.06 35.85 0.43 -3.47 16 21 O -0.42 -4.10 13.54 -11.47 -0.16 -4.25 16 22 C -0.09 -0.89 5.78 -27.49 -0.16 -1.05 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.76 6.92 -51.93 -0.36 0.40 16 38 H 0.40 2.14 9.28 45.56 0.42 2.57 16 39 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -32.50 329.93 -7.43 -39.93 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.21 Total: -2.77 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -1.83 Total: -19.23 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 1.17 Total: -29.99 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.51 Total: -9.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.50 -7.43 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712761245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.185 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds