Wall clock time and date at job start Mon Mar 30 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99334 * 2 1 4 4 H 1.48499 * 109.47103 * 239.99844 * 3 2 1 5 5 H 1.48494 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46971 * 120.00248 * 3 2 1 7 7 C 1.37874 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47260 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47260 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47332 * 180.02562 * 12 11 10 14 14 C 1.42899 * 114.00148 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.48431 * 29.97237 * 14 13 12 16 16 C 1.52966 * 109.48056 * 149.99724 * 14 13 12 17 17 C 1.52961 * 109.81494 * 183.57651 * 16 14 13 18 18 C 1.53234 * 109.40125 * 296.40329 * 17 16 14 19 19 C 1.51267 * 108.54042 * 54.63035 * 18 17 16 20 20 N 1.27951 * 120.85152 * 128.63189 * 19 18 17 21 21 O 1.41602 * 120.00054 * 0.02562 * 20 19 18 22 22 C 1.51271 * 118.29712 * 308.64752 * 19 18 17 23 23 H 0.96999 * 120.00678 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47233 * 60.00190 * 9 7 2 25 25 H 1.09002 * 109.47594 * 300.00193 * 9 7 2 26 26 H 1.09003 * 109.47433 * 60.00382 * 10 9 7 27 27 H 1.09000 * 109.47524 * 300.00111 * 10 9 7 28 28 H 1.09002 * 109.47189 * 59.99665 * 11 10 9 29 29 H 1.08995 * 109.46994 * 299.99966 * 11 10 9 30 30 H 1.09002 * 109.47293 * 59.99729 * 12 11 10 31 31 H 1.09002 * 109.46805 * 300.00178 * 12 11 10 32 32 H 1.08999 * 109.41436 * 303.68213 * 16 14 13 33 33 H 1.09000 * 109.41061 * 63.47200 * 16 14 13 34 34 H 1.08999 * 109.48121 * 56.38116 * 17 16 14 35 35 H 1.08995 * 109.48005 * 176.42727 * 17 16 14 36 36 H 1.09003 * 109.62645 * 294.91070 * 18 17 16 37 37 H 1.09000 * 109.62207 * 174.34247 * 18 17 16 38 38 H 0.96703 * 113.99626 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.62579 * 291.63513 * 22 19 18 40 40 H 1.08996 * 109.78340 * 171.15333 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0005 13 8 1.7605 -7.3875 -0.0017 14 6 2.6006 -8.5435 -0.0007 15 1 3.5337 -8.3144 0.5141 16 6 1.8891 -9.6904 0.7192 17 6 2.8160 -10.9043 0.8031 18 6 3.1252 -11.4073 -0.6109 19 6 3.6781 -10.2557 -1.4209 20 7 4.7748 -10.3763 -2.0690 21 8 5.4870 -11.5996 -2.0341 22 6 2.9016 -8.9578 -1.4449 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8722 -3.6042 0.8895 27 1 2.8722 -3.6042 -0.8905 28 1 0.8542 -5.0446 -0.8914 29 1 0.8537 -5.0451 0.8885 30 1 3.1010 -6.0922 0.8899 31 1 3.1022 -6.0920 -0.8901 32 1 1.6163 -9.3727 1.7256 33 1 0.9879 -9.9601 0.1687 34 1 3.7441 -10.6194 1.2986 35 1 2.3280 -11.6957 1.3719 36 1 2.2112 -11.7766 -1.0761 37 1 3.8633 -12.2078 -0.5614 38 1 6.3028 -11.5947 -2.5534 39 1 1.9669 -9.1003 -1.9873 40 1 3.4932 -8.1828 -1.9322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712761246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:00 Heat of formation + Delta-G solvation = -79.045526 kcal Electronic energy + Delta-G solvation = -18358.357006 eV Core-core repulsion = 15366.451796 eV Total energy + Delta-G solvation = -2991.905210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56576 -37.63329 -36.02792 -34.51119 -32.85336 -32.31233 -30.50591 -28.50485 -27.50251 -24.79753 -22.97157 -21.83046 -21.45567 -20.02905 -19.46758 -17.45741 -16.59810 -16.22187 -15.92947 -15.74109 -14.86504 -14.74873 -14.45284 -14.26506 -14.03949 -13.37538 -13.09946 -12.90898 -12.82035 -12.42484 -11.94596 -11.77054 -11.43329 -11.33707 -11.13806 -11.03751 -10.81010 -10.70174 -10.54039 -10.38558 -10.02028 -9.91322 -9.65173 -9.40666 -9.29471 -9.03864 -8.31913 -5.97085 -3.99616 1.69909 2.72328 3.34903 3.39164 3.41572 3.62302 4.21982 4.48127 4.51733 4.60753 4.68722 4.78652 4.91434 5.16953 5.21010 5.32133 5.37405 5.39195 5.45093 5.54468 5.59811 5.68576 5.76906 5.85431 5.92490 5.97212 6.12496 6.18003 6.47099 6.49158 6.79521 6.93235 7.10929 7.32981 7.43414 7.70982 7.86289 8.03534 8.45736 9.07580 9.64208 11.14250 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.041215 B = 0.002875 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.201697 B = 9735.808722 C =10180.199131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.060 3.940 13 O -0.377 6.377 14 C 0.097 3.903 15 H 0.063 0.937 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.142 3.858 20 N -0.339 5.339 21 O -0.418 6.418 22 C -0.089 4.089 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.401 0.599 39 H 0.102 0.898 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 -23.799 -0.663 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.016 4.016 13 O -0.296 6.296 14 C 0.037 3.963 15 H 0.081 0.919 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.051 4.051 20 N -0.081 5.081 21 O -0.324 6.324 22 C -0.128 4.128 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.249 0.751 39 H 0.120 0.880 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.371 -23.441 -0.881 24.308 hybrid contribution 0.937 0.458 -0.004 1.043 sum 7.308 -22.983 -0.885 24.133 Atomic orbital electron populations 1.69956 1.06049 1.26680 1.50847 1.25030 0.94849 0.99231 0.95381 0.86664 0.79581 0.83183 0.78593 1.20255 1.21291 1.20267 1.21241 0.92995 0.91183 1.50595 0.92779 1.19083 0.93981 0.91154 0.97324 1.21583 0.99199 0.93488 1.00310 1.21643 0.98070 0.92860 1.02815 1.22796 0.95476 0.83483 0.99806 1.87957 1.33535 1.13299 1.94796 1.21957 0.94203 0.86949 0.93171 0.91863 1.21635 0.99065 0.93425 1.01735 1.21481 1.00053 0.97735 0.95538 1.21315 1.02289 0.96463 0.95822 1.25243 0.91150 0.97067 0.91683 1.76109 1.07920 1.04594 1.19515 1.88406 1.40872 1.28948 1.74173 1.21197 0.99885 0.92086 0.99598 0.92956 0.96524 0.96542 0.93346 0.93331 0.91623 0.91648 0.93474 0.93498 0.90395 0.90521 0.91609 0.90444 0.89396 0.89738 0.75084 0.87968 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.12 -2.02 5.58 -26.73 -0.15 -2.17 16 12 C 0.06 0.87 5.75 37.16 0.21 1.08 16 13 O -0.38 -5.12 9.99 -35.23 -0.35 -5.47 16 14 C 0.10 1.02 2.62 -26.63 -0.07 0.95 16 15 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 16 C -0.12 -1.04 5.46 -26.77 -0.15 -1.18 16 17 C -0.11 -0.80 5.94 -26.63 -0.16 -0.96 16 18 C -0.12 -0.99 5.95 -27.48 -0.16 -1.15 16 19 C 0.14 1.45 6.54 -78.38 -0.51 0.94 16 20 N -0.34 -3.90 12.06 35.85 0.43 -3.47 16 21 O -0.42 -4.10 13.54 -11.47 -0.16 -4.25 16 22 C -0.09 -0.89 5.78 -27.48 -0.16 -1.05 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.05 0.63 8.02 -51.93 -0.42 0.22 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.76 6.92 -51.93 -0.36 0.40 16 38 H 0.40 2.14 9.28 45.56 0.42 2.57 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -32.46 329.92 -7.43 -39.89 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -6.21 Total: -2.70 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.83 Total: -19.25 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 1.17 Total: -30.01 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.51 Total: -9.72 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.46 -7.43 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712761246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.155 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds