Wall clock time and date at job start Mon Mar 30 2020 06:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99334 * 2 1 4 4 H 1.48499 * 109.47103 * 239.99844 * 3 2 1 5 5 H 1.48494 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46971 * 120.00248 * 3 2 1 7 7 C 1.37874 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47260 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47260 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47332 * 180.02562 * 12 11 10 14 14 C 1.42899 * 114.00148 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.48431 * 29.97237 * 14 13 12 16 16 C 1.52966 * 109.48056 * 149.99724 * 14 13 12 17 17 C 1.52961 * 109.81494 * 183.57651 * 16 14 13 18 18 C 1.53234 * 109.40125 * 296.40329 * 17 16 14 19 19 C 1.51267 * 108.54042 * 54.63035 * 18 17 16 20 20 N 1.27951 * 120.85152 * 128.63189 * 19 18 17 21 21 O 1.41602 * 120.00054 * 0.02562 * 20 19 18 22 22 C 1.51271 * 118.29712 * 308.64752 * 19 18 17 23 23 H 0.96999 * 120.00678 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47233 * 60.00190 * 9 7 2 25 25 H 1.09002 * 109.47594 * 300.00193 * 9 7 2 26 26 H 1.09003 * 109.47433 * 60.00382 * 10 9 7 27 27 H 1.09000 * 109.47524 * 300.00111 * 10 9 7 28 28 H 1.09002 * 109.47189 * 59.99665 * 11 10 9 29 29 H 1.08995 * 109.46994 * 299.99966 * 11 10 9 30 30 H 1.09002 * 109.47293 * 59.99729 * 12 11 10 31 31 H 1.09002 * 109.46805 * 300.00178 * 12 11 10 32 32 H 1.08999 * 109.41436 * 303.68213 * 16 14 13 33 33 H 1.09000 * 109.41061 * 63.47200 * 16 14 13 34 34 H 1.08999 * 109.48121 * 56.38116 * 17 16 14 35 35 H 1.08995 * 109.48005 * 176.42727 * 17 16 14 36 36 H 1.09003 * 109.62645 * 294.91070 * 18 17 16 37 37 H 1.09000 * 109.62207 * 174.34247 * 18 17 16 38 38 H 0.96703 * 113.99626 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.62579 * 291.63513 * 22 19 18 40 40 H 1.08996 * 109.78340 * 171.15333 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0005 13 8 1.7605 -7.3875 -0.0017 14 6 2.6006 -8.5435 -0.0007 15 1 3.5337 -8.3144 0.5141 16 6 1.8891 -9.6904 0.7192 17 6 2.8160 -10.9043 0.8031 18 6 3.1252 -11.4073 -0.6109 19 6 3.6781 -10.2557 -1.4209 20 7 4.7748 -10.3763 -2.0690 21 8 5.4870 -11.5996 -2.0341 22 6 2.9016 -8.9578 -1.4449 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8722 -3.6042 0.8895 27 1 2.8722 -3.6042 -0.8905 28 1 0.8542 -5.0446 -0.8914 29 1 0.8537 -5.0451 0.8885 30 1 3.1010 -6.0922 0.8899 31 1 3.1022 -6.0920 -0.8901 32 1 1.6163 -9.3727 1.7256 33 1 0.9879 -9.9601 0.1687 34 1 3.7441 -10.6194 1.2986 35 1 2.3280 -11.6957 1.3719 36 1 2.2112 -11.7766 -1.0761 37 1 3.8633 -12.2078 -0.5614 38 1 6.3028 -11.5947 -2.5534 39 1 1.9669 -9.1003 -1.9873 40 1 3.4932 -8.1828 -1.9322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712761246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:59 Heat of formation + Delta-G solvation = -100.145989 kcal Electronic energy + Delta-G solvation = -18359.271991 eV Core-core repulsion = 15366.451796 eV Total energy + Delta-G solvation = -2992.820195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38879 -38.55537 -36.96205 -36.14059 -34.32098 -33.51464 -31.50220 -30.11343 -28.27176 -26.58062 -23.90632 -23.19338 -22.39747 -21.65020 -20.24341 -18.42586 -18.25289 -17.41784 -16.92187 -16.81485 -16.46326 -15.81375 -15.56062 -15.22773 -14.97947 -14.53676 -14.39534 -13.92468 -13.77024 -13.61470 -13.56663 -13.14701 -12.87221 -12.65752 -12.40806 -12.27103 -12.12351 -11.96545 -11.84706 -11.54903 -11.43583 -11.31119 -11.07230 -10.82558 -10.69469 -10.53928 -10.32112 -8.18883 -6.30482 0.93530 1.40641 1.43989 1.51935 2.02071 2.41557 2.68588 3.13943 3.50877 3.78388 3.89421 3.94939 4.06139 4.12843 4.18926 4.24907 4.46496 4.47871 4.53292 4.61582 4.64886 4.71924 4.86751 4.88385 4.95845 5.06160 5.17819 5.21486 5.23969 5.27572 5.31575 5.35462 5.54833 5.77714 5.85800 5.87502 6.25716 6.29780 6.79586 6.87059 7.38863 8.92939 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.041215 B = 0.002875 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.201697 B = 9735.808722 C =10180.199131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.109 4.109 12 C 0.069 3.931 13 O -0.390 6.390 14 C 0.094 3.906 15 H 0.065 0.935 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.116 4.116 19 C 0.140 3.860 20 N -0.366 5.366 21 O -0.422 6.422 22 C -0.086 4.086 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.009 1.009 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.417 0.583 39 H 0.109 0.891 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -24.550 -0.390 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.147 4.147 12 C -0.007 4.007 13 O -0.310 6.310 14 C 0.035 3.965 15 H 0.083 0.917 16 C -0.155 4.155 17 C -0.140 4.140 18 C -0.156 4.156 19 C -0.053 4.053 20 N -0.109 5.109 21 O -0.332 6.332 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.268 0.732 39 H 0.127 0.873 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.559 -24.210 -0.613 25.370 hybrid contribution 0.558 0.636 -0.110 0.853 sum 8.118 -23.574 -0.723 24.943 Atomic orbital electron populations 1.70097 1.07871 1.27862 1.51681 1.26020 0.95788 1.03483 0.94733 0.85489 0.78261 0.77989 0.79238 1.19110 1.20849 1.19082 1.21721 0.93643 0.92465 1.50572 0.92023 1.19015 0.94510 0.93146 0.94798 1.21366 0.98055 0.92987 1.00937 1.21455 0.98285 0.92759 1.02187 1.22561 0.94371 0.82958 1.00807 1.87919 1.34399 1.13683 1.94972 1.22141 0.94213 0.86439 0.93731 0.91729 1.21638 0.99328 0.93036 1.01527 1.21446 0.99774 0.97663 0.95102 1.21339 1.02560 0.95510 0.96141 1.25400 0.90863 0.97549 0.91498 1.76030 1.08754 1.05614 1.20469 1.88373 1.41815 1.28261 1.74754 1.21149 1.00061 0.91966 0.99301 0.92755 0.99111 0.99081 0.92589 0.92666 0.92335 0.92295 0.92386 0.92593 0.90281 0.90014 0.91961 0.88354 0.88060 0.90285 0.73233 0.87304 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.92 5.15 30.60 0.16 -3.77 16 11 C -0.11 -3.76 5.58 30.60 0.17 -3.59 16 12 C 0.07 1.89 5.75 71.98 0.41 2.30 16 13 O -0.39 -10.09 9.99 -148.98 -1.49 -11.57 16 14 C 0.09 1.83 2.62 30.66 0.08 1.91 16 15 H 0.06 1.25 7.79 -2.39 -0.02 1.23 16 16 C -0.12 -1.78 5.46 30.57 0.17 -1.61 16 17 C -0.10 -1.24 5.94 30.66 0.18 -1.06 16 18 C -0.12 -1.70 5.95 30.11 0.18 -1.52 16 19 C 0.14 2.68 6.54 46.90 0.31 2.98 16 20 N -0.37 -8.07 12.06 -40.36 -0.49 -8.56 16 21 O -0.42 -7.80 13.54 -38.79 -0.53 -8.33 16 22 C -0.09 -1.63 5.78 30.11 0.17 -1.45 16 23 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 31 H 0.06 1.43 8.02 -2.39 -0.02 1.41 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.27 6.92 -2.39 -0.02 1.26 16 38 H 0.42 4.02 9.28 -74.06 -0.69 3.33 16 39 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 1.61 8.02 -2.39 -0.02 1.59 16 Total: -1.00 -69.35 329.92 2.80 -66.55 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.31 Total: 8.33 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 2.68 Total: -35.48 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.20 Total: -66.13 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -2.01 Total: -19.90 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.35 2.80 -66.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712761246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.596 kcal (2) G-P(sol) polarization free energy of solvation -69.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds