Wall clock time and date at job start Mon Mar 30 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47423 * 269.99617 * 3 2 1 5 5 H 1.48496 * 109.47157 * 30.00121 * 3 2 1 6 6 H 1.48505 * 109.47143 * 149.99665 * 3 2 1 7 7 C 1.37882 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99940 * 173.37064 * 7 2 1 9 9 C 1.50693 * 119.99506 * 353.36597 * 7 2 1 10 10 C 1.53002 * 115.54916 * 85.27573 * 9 7 2 11 11 N 1.46894 * 109.47392 * 39.56904 * 10 9 7 12 12 C 1.46902 * 111.00180 * 174.70908 * 11 10 9 13 13 C 1.52997 * 109.46800 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46750 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.30430 * 52.82791 * 14 13 12 16 16 C 1.53712 * 110.34136 * 175.00022 * 14 13 12 17 17 C 1.52937 * 112.49240 * 116.04534 * 16 14 13 18 18 C 1.55156 * 108.96147 * 30.10176 * 17 16 14 19 19 S 1.83394 * 110.34050 * 290.54414 * 14 13 12 20 20 C 1.53000 * 117.52062 * 230.97395 * 9 7 2 21 21 C 1.52998 * 60.00101 * 107.48603 * 20 9 7 22 22 H 0.97001 * 120.00306 * 5.06838 * 1 2 3 23 23 H 1.09004 * 109.47069 * 279.56772 * 10 9 7 24 24 H 1.09006 * 109.47120 * 159.57523 * 10 9 7 25 25 H 1.00893 * 110.99941 * 298.67189 * 11 10 9 26 26 H 1.09002 * 109.47170 * 300.00278 * 12 11 10 27 27 H 1.08990 * 109.46901 * 60.00331 * 12 11 10 28 28 H 1.09002 * 109.47259 * 299.99946 * 13 12 11 29 29 H 1.08996 * 109.47741 * 60.00497 * 13 12 11 30 30 H 1.08999 * 108.88782 * 236.83816 * 16 14 13 31 31 H 1.08995 * 108.88820 * 355.25345 * 16 14 13 32 32 H 1.08997 * 109.60731 * 150.03034 * 17 16 14 33 33 H 1.08998 * 109.60673 * 270.17216 * 17 16 14 34 34 H 1.08997 * 111.13248 * 76.46933 * 18 17 16 35 35 H 1.08998 * 111.13380 * 200.60526 * 18 17 16 36 36 H 1.08998 * 117.50151 * 214.97667 * 20 9 7 37 37 H 1.09001 * 117.49451 * 359.97438 * 20 9 7 38 38 H 1.09003 * 117.49715 * 252.51603 * 21 20 9 39 39 H 1.08993 * 117.49892 * 107.49256 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0791 -1.1971 -0.1085 9 6 1.2586 -2.4948 0.1497 10 6 0.6962 -3.0862 -1.1445 11 7 1.6659 -2.8966 -2.2315 12 6 1.2153 -3.5622 -3.4611 13 6 2.2491 -3.3435 -4.5676 14 6 1.7794 -4.0362 -5.8484 15 1 0.7674 -3.7195 -6.1004 16 6 2.7406 -3.7257 -7.0071 17 6 3.4506 -4.9756 -7.5293 18 6 2.5238 -6.2034 -7.3269 19 16 1.8494 -5.8581 -5.6502 20 6 1.7516 -3.4732 1.2177 21 6 0.4483 -2.7007 1.4310 22 1 -0.4850 0.8367 -0.0742 23 1 -0.2370 -2.5833 -1.3983 24 1 0.5091 -4.1511 -1.0061 25 1 1.8399 -1.9162 -2.3939 26 1 1.1026 -4.6304 -3.2756 27 1 0.2575 -3.1441 -3.7704 28 1 2.3622 -2.2754 -4.7531 29 1 3.2068 -3.7619 -4.2581 30 1 2.1758 -3.2741 -7.8226 31 1 3.4895 -3.0125 -6.6628 32 1 3.6711 -4.8548 -8.5898 33 1 4.3801 -5.1247 -6.9799 34 1 1.7297 -6.2236 -8.0733 35 1 3.0940 -7.1323 -7.3382 36 1 1.6753 -4.5381 0.9983 37 1 2.6160 -3.1763 1.8116 38 1 0.4551 -1.8954 2.1656 39 1 -0.4854 -3.2574 1.3520 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715820304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:02 Heat of formation + Delta-G solvation = 5.536481 kcal Electronic energy + Delta-G solvation = -16807.579037 eV Core-core repulsion = 14262.094449 eV Total energy + Delta-G solvation = -2545.484588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.27077 -36.57440 -34.63838 -31.88550 -31.62634 -27.76112 -25.61920 -24.89780 -23.17105 -21.24270 -20.91749 -20.41804 -18.95569 -16.88311 -15.94673 -15.50798 -15.18480 -14.56966 -14.48953 -14.07524 -13.93592 -13.39812 -13.21537 -12.76747 -12.51701 -11.85403 -11.78843 -11.63392 -11.45775 -11.19540 -10.97344 -10.92137 -10.84251 -10.60910 -10.56488 -10.40035 -10.05437 -9.74591 -9.34318 -8.74121 -8.39198 -8.00527 -7.69012 -7.30410 -5.98349 -4.02600 1.80999 2.32735 3.29413 3.37754 3.42178 4.32359 4.42881 4.54301 4.68152 4.79306 5.02547 5.15303 5.29409 5.33923 5.39050 5.44242 5.53467 5.60638 5.67691 5.81928 5.88876 5.93113 6.04590 6.23498 6.43008 6.48189 6.51253 6.66982 6.84450 6.88979 7.03431 7.20526 7.50796 7.58606 7.92958 8.15450 8.47806 8.59825 9.00537 9.61139 11.09755 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.004663 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.564981 B = 6003.902075 C = 6708.221862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.108 3.892 11 N -0.674 5.674 12 C 0.058 3.942 13 C -0.100 4.100 14 C -0.032 4.032 15 H 0.093 0.907 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.078 4.078 19 S -0.286 6.286 20 C -0.207 4.207 21 C -0.163 4.163 22 H 0.258 0.742 23 H 0.027 0.973 24 H 0.036 0.964 25 H 0.351 0.649 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -7.864 -14.837 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.050 3.950 10 C -0.021 4.021 11 N -0.306 5.306 12 C -0.072 4.072 13 C -0.139 4.139 14 C -0.161 4.161 15 H 0.112 0.888 16 C -0.167 4.167 17 C -0.162 4.162 18 C -0.226 4.226 19 S -0.060 6.060 20 C -0.245 4.245 21 C -0.202 4.202 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.172 0.828 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.620 -8.984 -13.643 16.732 hybrid contribution -0.198 2.254 -1.214 2.567 sum 3.422 -6.731 -14.857 16.666 Atomic orbital electron populations 1.70002 1.05846 1.26470 1.49706 1.25010 0.94753 0.98738 0.95016 0.86679 0.80050 0.83769 0.78046 1.20794 1.21407 1.19823 1.20408 0.93154 0.88514 1.49845 0.92041 1.18786 0.97052 0.93601 0.85568 1.21344 0.92495 0.96399 0.91861 1.60376 1.46228 1.19879 1.04118 1.21916 0.94865 0.99622 0.90806 1.21654 1.00646 0.99902 0.91725 1.23764 1.02060 0.91950 0.98350 0.88822 1.22100 0.98783 0.98774 0.97021 1.22361 0.99364 0.92559 1.01937 1.24332 1.01019 1.01363 0.95859 1.88096 1.86789 1.09534 1.21552 1.22986 0.97983 0.95669 1.07818 1.22519 0.92237 1.01305 1.04095 0.93220 0.95529 0.94528 0.82845 0.91712 0.96552 0.90970 0.89920 0.91260 0.89925 0.90519 0.90378 0.89582 0.87959 0.91882 0.90775 0.90294 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 12.93 55.43 0.72 -24.06 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.89 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.48 -12.91 7.47 -34.44 -0.26 -13.17 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.05 1.27 1.76 -155.66 -0.27 1.00 16 10 C 0.11 2.51 5.80 -3.83 -0.02 2.49 16 11 N -0.67 -14.17 6.26 -113.78 -0.71 -14.88 16 12 C 0.06 1.01 5.56 -3.82 -0.02 0.99 16 13 C -0.10 -1.42 4.71 -26.73 -0.13 -1.55 16 14 C -0.03 -0.38 3.30 -26.36 -0.09 -0.47 16 15 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.13 -1.19 6.03 -26.39 -0.16 -1.35 16 17 C -0.12 -1.01 6.34 -25.62 -0.16 -1.17 16 18 C -0.08 -0.69 7.52 38.30 0.29 -0.41 16 19 S -0.29 -3.71 21.81 -107.50 -2.34 -6.06 16 20 C -0.21 -4.77 9.88 -26.73 -0.26 -5.04 16 21 C -0.16 -3.98 9.46 -26.73 -0.25 -4.23 16 22 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 25 H 0.35 7.81 7.71 -39.30 -0.30 7.50 16 26 H 0.06 1.17 7.42 -51.93 -0.39 0.79 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.76 7.62 -51.93 -0.40 0.36 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 37 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -28.21 325.82 -10.84 -39.05 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.96 Total: 6.39 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.43 Total: -21.19 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.00 Total: -38.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.34 Total: -6.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.21 -10.84 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715820304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.591 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds