Wall clock time and date at job start Mon Mar 30 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47423 * 269.99617 * 3 2 1 5 5 H 1.48496 * 109.47157 * 30.00121 * 3 2 1 6 6 H 1.48505 * 109.47143 * 149.99665 * 3 2 1 7 7 C 1.37882 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99940 * 173.37064 * 7 2 1 9 9 C 1.50693 * 119.99506 * 353.36597 * 7 2 1 10 10 C 1.53002 * 115.54916 * 85.27573 * 9 7 2 11 11 N 1.46894 * 109.47392 * 39.56904 * 10 9 7 12 12 C 1.46902 * 111.00180 * 174.70908 * 11 10 9 13 13 C 1.52997 * 109.46800 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46750 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.30430 * 52.82791 * 14 13 12 16 16 C 1.53712 * 110.34136 * 175.00022 * 14 13 12 17 17 C 1.52937 * 112.49240 * 116.04534 * 16 14 13 18 18 C 1.55156 * 108.96147 * 30.10176 * 17 16 14 19 19 S 1.83394 * 110.34050 * 290.54414 * 14 13 12 20 20 C 1.53000 * 117.52062 * 230.97395 * 9 7 2 21 21 C 1.52998 * 60.00101 * 107.48603 * 20 9 7 22 22 H 0.97001 * 120.00306 * 5.06838 * 1 2 3 23 23 H 1.09004 * 109.47069 * 279.56772 * 10 9 7 24 24 H 1.09006 * 109.47120 * 159.57523 * 10 9 7 25 25 H 1.00893 * 110.99941 * 298.67189 * 11 10 9 26 26 H 1.09002 * 109.47170 * 300.00278 * 12 11 10 27 27 H 1.08990 * 109.46901 * 60.00331 * 12 11 10 28 28 H 1.09002 * 109.47259 * 299.99946 * 13 12 11 29 29 H 1.08996 * 109.47741 * 60.00497 * 13 12 11 30 30 H 1.08999 * 108.88782 * 236.83816 * 16 14 13 31 31 H 1.08995 * 108.88820 * 355.25345 * 16 14 13 32 32 H 1.08997 * 109.60731 * 150.03034 * 17 16 14 33 33 H 1.08998 * 109.60673 * 270.17216 * 17 16 14 34 34 H 1.08997 * 111.13248 * 76.46933 * 18 17 16 35 35 H 1.08998 * 111.13380 * 200.60526 * 18 17 16 36 36 H 1.08998 * 117.50151 * 214.97667 * 20 9 7 37 37 H 1.09001 * 117.49451 * 359.97438 * 20 9 7 38 38 H 1.09003 * 117.49715 * 252.51603 * 21 20 9 39 39 H 1.08993 * 117.49892 * 107.49256 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0791 -1.1971 -0.1085 9 6 1.2586 -2.4948 0.1497 10 6 0.6962 -3.0862 -1.1445 11 7 1.6659 -2.8966 -2.2315 12 6 1.2153 -3.5622 -3.4611 13 6 2.2491 -3.3435 -4.5676 14 6 1.7794 -4.0362 -5.8484 15 1 0.7674 -3.7195 -6.1004 16 6 2.7406 -3.7257 -7.0071 17 6 3.4506 -4.9756 -7.5293 18 6 2.5238 -6.2034 -7.3269 19 16 1.8494 -5.8581 -5.6502 20 6 1.7516 -3.4732 1.2177 21 6 0.4483 -2.7007 1.4310 22 1 -0.4850 0.8367 -0.0742 23 1 -0.2370 -2.5833 -1.3983 24 1 0.5091 -4.1511 -1.0061 25 1 1.8399 -1.9162 -2.3939 26 1 1.1026 -4.6304 -3.2756 27 1 0.2575 -3.1441 -3.7704 28 1 2.3622 -2.2754 -4.7531 29 1 3.2068 -3.7619 -4.2581 30 1 2.1758 -3.2741 -7.8226 31 1 3.4895 -3.0125 -6.6628 32 1 3.6711 -4.8548 -8.5898 33 1 4.3801 -5.1247 -6.9799 34 1 1.7297 -6.2236 -8.0733 35 1 3.0940 -7.1323 -7.3382 36 1 1.6753 -4.5381 0.9983 37 1 2.6160 -3.1763 1.8116 38 1 0.4551 -1.8954 2.1656 39 1 -0.4854 -3.2574 1.3520 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715820304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:02 Heat of formation + Delta-G solvation = -9.370296 kcal Electronic energy + Delta-G solvation = -16808.225444 eV Core-core repulsion = 14262.094449 eV Total energy + Delta-G solvation = -2546.130995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.90782 -37.77435 -36.00179 -33.95298 -32.83329 -28.92689 -27.50041 -26.23968 -24.47887 -22.89023 -22.55384 -21.22294 -20.89678 -17.89245 -17.83187 -16.70335 -16.59468 -16.29330 -15.72731 -15.69538 -15.13627 -14.72086 -14.62973 -14.17160 -13.76548 -13.32124 -13.19410 -12.89051 -12.83463 -12.74423 -12.63292 -12.32969 -12.29187 -12.01499 -11.93429 -11.90432 -11.43526 -11.22405 -10.75186 -10.68214 -10.39547 -9.92870 -9.05328 -8.69824 -8.05016 -6.14884 0.93638 1.42824 1.46491 1.48868 1.55538 2.45943 3.20859 3.28340 3.56178 3.67753 3.88304 3.99869 4.12288 4.14591 4.34376 4.36116 4.42591 4.52934 4.63676 4.69153 4.71450 4.75085 4.80461 4.91987 5.00446 5.03900 5.06793 5.10361 5.11969 5.22223 5.26078 5.32543 5.60824 5.64471 5.81877 6.37203 6.56181 6.73242 6.92471 7.51707 9.02689 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.004663 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.564981 B = 6003.902075 C = 6708.221862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.052 0.948 9 C 0.024 3.976 10 C 0.120 3.880 11 N -0.676 5.676 12 C 0.063 3.937 13 C -0.090 4.090 14 C -0.020 4.020 15 H 0.093 0.907 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.058 4.058 19 S -0.362 6.362 20 C -0.188 4.188 21 C -0.167 4.167 22 H 0.258 0.742 23 H 0.000 1.000 24 H 0.044 0.956 25 H 0.343 0.657 26 H 0.058 0.942 27 H 0.012 0.988 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.843 -7.965 -16.663 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.023 3.977 10 C -0.010 4.010 11 N -0.307 5.307 12 C -0.067 4.067 13 C -0.129 4.129 14 C -0.149 4.149 15 H 0.111 0.889 16 C -0.165 4.165 17 C -0.158 4.158 18 C -0.206 4.206 19 S -0.136 6.136 20 C -0.225 4.225 21 C -0.205 4.205 22 H 0.067 0.933 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.162 0.838 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.779 -9.101 -15.479 18.581 hybrid contribution -0.555 2.220 -0.659 2.381 sum 4.223 -6.881 -16.138 18.045 Atomic orbital electron populations 1.70114 1.07108 1.27082 1.50651 1.25629 0.95399 1.01611 0.94706 0.85718 0.78664 0.79912 0.78338 1.19752 1.21631 1.19670 1.20539 0.92796 0.89645 1.49719 0.92940 1.18989 0.97984 0.94086 0.86635 1.21147 0.91655 0.96220 0.91944 1.60371 1.45737 1.19376 1.05213 1.21940 0.95756 0.98615 0.90379 1.21538 0.99062 1.00561 0.91736 1.23699 1.02793 0.90339 0.98081 0.88853 1.22124 0.98501 0.99568 0.96350 1.22362 0.98625 0.91371 1.03484 1.24455 1.01334 1.02362 0.92428 1.88342 1.87580 1.11484 1.26228 1.22982 0.97049 0.96379 1.06055 1.22427 0.93400 1.01299 1.03393 0.93339 0.98178 0.93715 0.83766 0.92393 0.96981 0.90305 0.90748 0.89495 0.89674 0.87712 0.90816 0.88147 0.86734 0.89803 0.90683 0.92325 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.67 12.93 21.45 0.28 -51.40 16 2 C 0.03 1.41 5.39 84.66 0.46 1.87 16 3 Si 0.95 42.81 29.55 68.60 2.03 44.83 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.49 -26.34 7.47 25.60 0.19 -26.15 16 8 H 0.05 2.87 7.82 -2.91 -0.02 2.84 16 9 C 0.02 1.19 1.76 -52.93 -0.09 1.10 16 10 C 0.12 5.63 5.80 86.31 0.50 6.13 16 11 N -0.68 -28.59 6.26 -513.90 -3.22 -31.81 16 12 C 0.06 2.19 5.56 86.30 0.48 2.67 16 13 C -0.09 -2.49 4.71 30.59 0.14 -2.35 16 14 C -0.02 -0.46 3.30 30.84 0.10 -0.35 16 15 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.13 -2.02 6.03 30.81 0.19 -1.83 16 17 C -0.12 -1.57 6.34 31.31 0.20 -1.37 16 18 C -0.06 -0.89 7.52 72.72 0.55 -0.34 16 19 S -0.36 -9.14 21.81 -56.49 -1.23 -10.37 16 20 C -0.19 -8.47 9.88 30.59 0.30 -8.17 16 21 C -0.17 -8.16 9.46 30.59 0.29 -7.87 16 22 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 23 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 24 H 0.04 1.98 7.93 -2.38 -0.02 1.96 16 25 H 0.34 15.41 7.71 -89.70 -0.69 14.71 16 26 H 0.06 2.12 7.42 -2.39 -0.02 2.10 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.34 7.62 -2.39 -0.02 1.32 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 3.42 8.08 -2.39 -0.02 3.40 16 37 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -60.26 325.82 1.47 -58.80 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.31 Total: 26.62 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 3.30 Total: -36.67 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.94 Total: -83.20 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.23 Total: -10.37 kcal Total: -60.26 1.47 -58.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715820304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.426 kcal (2) G-P(sol) polarization free energy of solvation -60.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds