Wall clock time and date at job start Mon Mar 30 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99390 * 2 1 4 4 H 1.48506 * 109.47162 * 265.34583 * 3 2 1 5 5 H 1.48497 * 109.47673 * 25.34719 * 3 2 1 6 6 H 1.48502 * 109.47239 * 145.34924 * 3 2 1 7 7 C 1.37868 * 120.00579 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99814 * 5.88776 * 7 2 1 9 9 C 1.50700 * 120.00405 * 185.88862 * 7 2 1 10 10 C 1.53007 * 115.54910 * 91.56642 * 9 7 2 11 11 N 1.46903 * 109.47023 * 304.39332 * 10 9 7 12 12 C 1.46897 * 110.99831 * 185.52020 * 11 10 9 13 13 C 1.52996 * 109.47344 * 183.96469 * 12 11 10 14 14 C 1.52997 * 109.47517 * 184.25366 * 13 12 11 15 15 H 1.09001 * 110.69959 * 305.70190 * 14 13 12 16 16 C 1.54253 * 110.79164 * 182.38712 * 14 13 12 17 17 C 1.52334 * 112.58716 * 217.20057 * 16 14 13 18 18 C 1.54254 * 112.58854 * 359.97438 * 17 16 14 19 19 S 1.83960 * 110.78735 * 69.01365 * 14 13 12 20 20 C 1.53001 * 117.49886 * 305.90046 * 9 7 2 21 21 C 1.52999 * 117.50345 * 237.24113 * 9 7 2 22 22 H 0.96994 * 120.00447 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46595 * 64.39206 * 10 9 7 24 24 H 1.08995 * 109.46945 * 184.38968 * 10 9 7 25 25 H 1.00895 * 111.00035 * 61.57093 * 11 10 9 26 26 H 1.09004 * 109.47462 * 303.96557 * 12 11 10 27 27 H 1.09008 * 109.46951 * 63.96419 * 12 11 10 28 28 H 1.09003 * 109.47203 * 304.25174 * 13 12 11 29 29 H 1.09000 * 109.46893 * 64.24920 * 13 12 11 30 30 H 1.09000 * 108.86747 * 338.01327 * 16 14 13 31 31 H 1.08995 * 108.87320 * 96.51659 * 16 14 13 32 32 H 1.09004 * 108.86807 * 120.81808 * 17 16 14 33 33 H 1.09006 * 108.86726 * 239.31649 * 17 16 14 34 34 H 1.09006 * 110.78451 * 142.80730 * 18 17 16 35 35 H 1.09003 * 110.78462 * 266.06927 * 18 17 16 36 36 H 1.09000 * 117.49831 * 0.02562 * 20 9 7 37 37 H 1.08998 * 117.49716 * 145.01338 * 20 9 7 38 38 H 1.08995 * 117.49683 * 214.98257 * 21 9 7 39 39 H 1.09005 * 117.49572 * 359.97264 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5949 1.9898 -1.3955 5 1 1.4007 2.6791 0.5993 6 1 3.4940 1.4708 0.7960 7 6 2.0046 -1.1939 0.0005 8 1 1.4690 -2.1268 -0.0950 9 6 3.5057 -1.1972 0.1344 10 6 4.0405 -1.3066 1.5638 11 7 3.4732 -0.2270 2.3828 12 6 4.0639 -0.2205 3.7277 13 6 3.3801 0.8503 4.5800 14 6 4.0655 0.9299 5.9456 15 1 4.0912 -0.0504 6.4215 16 6 3.3615 1.9603 6.8523 17 6 4.3399 2.7394 7.7220 18 6 5.8049 2.3146 7.4922 19 16 5.7622 1.6225 5.7851 20 6 4.3052 -0.3481 -0.8559 21 6 4.3125 -1.8741 -0.9754 22 1 -0.4850 0.8400 -0.0004 23 1 3.7556 -2.2705 1.9855 24 1 5.1270 -1.2216 1.5527 25 1 2.4679 -0.2989 2.4298 26 1 3.9242 -1.1974 4.1907 27 1 5.1294 -0.0018 3.6555 28 1 3.4547 1.8157 4.0793 29 1 2.3300 0.5913 4.7150 30 1 2.8102 2.6621 6.2265 31 1 2.6570 1.4375 7.4992 32 1 4.2413 3.8017 7.4987 33 1 4.0879 2.5754 8.7698 34 1 6.4702 3.1765 7.5448 35 1 6.1040 1.5524 8.2117 36 1 3.7454 0.2133 -1.6040 37 1 5.2122 0.1323 -0.4892 38 1 5.2244 -2.3971 -0.6873 39 1 3.7576 -2.3175 -1.8022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715820311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:04 Heat of formation + Delta-G solvation = 15.615723 kcal Electronic energy + Delta-G solvation = -17093.712916 eV Core-core repulsion = 14548.665397 eV Total energy + Delta-G solvation = -2545.047520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.53820 -36.72421 -34.82922 -31.98938 -31.80250 -27.93542 -25.86036 -24.98950 -23.32497 -21.56562 -21.25607 -20.35404 -18.74711 -16.95571 -16.24212 -15.63913 -15.33911 -14.77481 -14.56989 -14.23139 -13.86424 -13.59837 -13.16768 -12.97873 -12.44487 -12.20287 -12.00529 -11.75488 -11.55982 -11.54421 -11.03655 -10.87837 -10.78790 -10.68130 -10.45726 -10.16075 -9.84688 -9.78800 -9.36362 -8.94482 -8.48733 -8.37884 -7.74337 -7.35906 -6.00649 -4.06835 1.79087 2.25294 3.51238 3.61282 3.91100 4.24605 4.49503 4.58077 4.67820 4.84596 4.92570 4.98879 5.14476 5.28507 5.30974 5.40215 5.44242 5.47422 5.68498 5.75992 5.77807 5.89859 5.90751 5.94360 6.17853 6.24057 6.37594 6.38807 6.47481 6.59869 6.60282 6.84134 7.15297 7.22007 7.83077 7.93454 8.25494 8.57940 8.99379 9.63952 11.09054 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.005434 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.791357 B = 5151.069726 C = 5573.929450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.082 3.918 3 Si 0.870 3.130 4 H -0.295 1.295 5 H -0.307 1.307 6 H -0.207 1.207 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.009 3.991 10 C 0.103 3.897 11 N -0.676 5.676 12 C 0.059 3.941 13 C -0.104 4.104 14 C -0.026 4.026 15 H 0.093 0.907 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.073 4.073 19 S -0.290 6.290 20 C -0.197 4.197 21 C -0.187 4.187 22 H 0.263 0.737 23 H 0.022 0.978 24 H 0.046 0.954 25 H 0.354 0.646 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 3.975 15.590 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.223 1.223 5 H -0.236 1.236 6 H -0.128 1.128 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.026 4.026 11 N -0.309 5.309 12 C -0.071 4.071 13 C -0.143 4.143 14 C -0.155 4.155 15 H 0.112 0.888 16 C -0.165 4.165 17 C -0.163 4.163 18 C -0.222 4.222 19 S -0.063 6.063 20 C -0.234 4.234 21 C -0.225 4.225 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.175 0.825 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.214 4.555 14.457 18.278 hybrid contribution -0.931 0.120 1.158 1.491 sum 9.283 4.675 15.614 18.757 Atomic orbital electron populations 1.69941 1.06753 1.27241 1.50045 1.24994 0.94474 0.99463 0.93098 0.87060 0.83194 0.81723 0.78200 1.22277 1.23554 1.12835 1.20246 0.87119 0.94422 1.51552 0.91030 1.19386 0.94115 0.98914 0.86808 1.21444 0.96252 0.90875 0.94020 1.60594 1.11865 1.48333 1.10117 1.21948 0.99325 0.95888 0.89951 1.21572 0.99200 1.01745 0.91784 1.23930 0.91796 1.00502 0.99288 0.88847 1.22129 0.98812 0.97761 0.97814 1.21984 0.92436 1.01382 1.00455 1.24156 0.99363 1.03161 0.95497 1.88319 1.24397 1.73623 1.20008 1.22906 1.02078 0.93056 1.05355 1.22869 1.01399 0.94573 1.03647 0.92784 0.96027 0.93548 0.82525 0.96140 0.91408 0.89802 0.90547 0.90201 0.90792 0.90730 0.91066 0.88131 0.89638 0.89878 0.90853 0.91264 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.08 2.34 4.95 -17.82 -0.09 2.25 16 3 Si 0.87 22.05 23.22 -169.99 -3.95 18.10 16 4 H -0.30 -7.64 6.87 56.52 0.39 -7.25 16 5 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.21 -4.98 5.41 56.52 0.31 -4.68 16 7 C -0.50 -13.76 8.80 -34.44 -0.30 -14.06 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 9 C 0.01 0.21 1.41 -155.66 -0.22 -0.01 16 10 C 0.10 2.16 5.61 -3.82 -0.02 2.14 16 11 N -0.68 -13.72 3.88 -113.78 -0.44 -14.16 16 12 C 0.06 0.97 5.62 -3.83 -0.02 0.95 16 13 C -0.10 -1.49 4.81 -26.73 -0.13 -1.62 16 14 C -0.03 -0.31 3.30 -26.08 -0.09 -0.39 16 15 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 16 C -0.13 -1.21 5.93 -26.42 -0.16 -1.37 16 17 C -0.12 -1.01 6.30 -26.41 -0.17 -1.18 16 18 C -0.07 -0.66 7.47 37.81 0.28 -0.38 16 19 S -0.29 -3.75 21.86 -107.50 -2.35 -6.10 16 20 C -0.20 -4.40 7.20 -26.69 -0.19 -4.59 16 21 C -0.19 -3.93 9.96 -26.70 -0.27 -4.20 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.35 7.79 7.14 -39.29 -0.28 7.51 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 1.15 7.31 -51.92 -0.38 0.77 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.81 7.78 -51.93 -0.40 0.41 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.98 6.14 -51.93 -0.32 1.66 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -30.10 312.33 -9.59 -39.69 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.97 Total: 6.75 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.37 Total: -22.45 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.33 Total: -40.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -3.95 Total: 18.10 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.35 Total: -6.10 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.10 -9.59 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715820311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.310 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds