Wall clock time and date at job start Mon Mar 30 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99390 * 2 1 4 4 H 1.48506 * 109.47162 * 265.34583 * 3 2 1 5 5 H 1.48497 * 109.47673 * 25.34719 * 3 2 1 6 6 H 1.48502 * 109.47239 * 145.34924 * 3 2 1 7 7 C 1.37868 * 120.00579 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99814 * 5.88776 * 7 2 1 9 9 C 1.50700 * 120.00405 * 185.88862 * 7 2 1 10 10 C 1.53007 * 115.54910 * 91.56642 * 9 7 2 11 11 N 1.46903 * 109.47023 * 304.39332 * 10 9 7 12 12 C 1.46897 * 110.99831 * 185.52020 * 11 10 9 13 13 C 1.52996 * 109.47344 * 183.96469 * 12 11 10 14 14 C 1.52997 * 109.47517 * 184.25366 * 13 12 11 15 15 H 1.09001 * 110.69959 * 305.70190 * 14 13 12 16 16 C 1.54253 * 110.79164 * 182.38712 * 14 13 12 17 17 C 1.52334 * 112.58716 * 217.20057 * 16 14 13 18 18 C 1.54254 * 112.58854 * 359.97438 * 17 16 14 19 19 S 1.83960 * 110.78735 * 69.01365 * 14 13 12 20 20 C 1.53001 * 117.49886 * 305.90046 * 9 7 2 21 21 C 1.52999 * 117.50345 * 237.24113 * 9 7 2 22 22 H 0.96994 * 120.00447 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46595 * 64.39206 * 10 9 7 24 24 H 1.08995 * 109.46945 * 184.38968 * 10 9 7 25 25 H 1.00895 * 111.00035 * 61.57093 * 11 10 9 26 26 H 1.09004 * 109.47462 * 303.96557 * 12 11 10 27 27 H 1.09008 * 109.46951 * 63.96419 * 12 11 10 28 28 H 1.09003 * 109.47203 * 304.25174 * 13 12 11 29 29 H 1.09000 * 109.46893 * 64.24920 * 13 12 11 30 30 H 1.09000 * 108.86747 * 338.01327 * 16 14 13 31 31 H 1.08995 * 108.87320 * 96.51659 * 16 14 13 32 32 H 1.09004 * 108.86807 * 120.81808 * 17 16 14 33 33 H 1.09006 * 108.86726 * 239.31649 * 17 16 14 34 34 H 1.09006 * 110.78451 * 142.80730 * 18 17 16 35 35 H 1.09003 * 110.78462 * 266.06927 * 18 17 16 36 36 H 1.09000 * 117.49831 * 0.02562 * 20 9 7 37 37 H 1.08998 * 117.49716 * 145.01338 * 20 9 7 38 38 H 1.08995 * 117.49683 * 214.98257 * 21 9 7 39 39 H 1.09005 * 117.49572 * 359.97264 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5949 1.9898 -1.3955 5 1 1.4007 2.6791 0.5993 6 1 3.4940 1.4708 0.7960 7 6 2.0046 -1.1939 0.0005 8 1 1.4690 -2.1268 -0.0950 9 6 3.5057 -1.1972 0.1344 10 6 4.0405 -1.3066 1.5638 11 7 3.4732 -0.2270 2.3828 12 6 4.0639 -0.2205 3.7277 13 6 3.3801 0.8503 4.5800 14 6 4.0655 0.9299 5.9456 15 1 4.0912 -0.0504 6.4215 16 6 3.3615 1.9603 6.8523 17 6 4.3399 2.7394 7.7220 18 6 5.8049 2.3146 7.4922 19 16 5.7622 1.6225 5.7851 20 6 4.3052 -0.3481 -0.8559 21 6 4.3125 -1.8741 -0.9754 22 1 -0.4850 0.8400 -0.0004 23 1 3.7556 -2.2705 1.9855 24 1 5.1270 -1.2216 1.5527 25 1 2.4679 -0.2989 2.4298 26 1 3.9242 -1.1974 4.1907 27 1 5.1294 -0.0018 3.6555 28 1 3.4547 1.8157 4.0793 29 1 2.3300 0.5913 4.7150 30 1 2.8102 2.6621 6.2265 31 1 2.6570 1.4375 7.4992 32 1 4.2413 3.8017 7.4987 33 1 4.0879 2.5754 8.7698 34 1 6.4702 3.1765 7.5448 35 1 6.1040 1.5524 8.2117 36 1 3.7454 0.2133 -1.6040 37 1 5.2122 0.1323 -0.4892 38 1 5.2244 -2.3971 -0.6873 39 1 3.7576 -2.3175 -1.8022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715820311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:04 Heat of formation + Delta-G solvation = -2.093030 kcal Electronic energy + Delta-G solvation = -17094.480826 eV Core-core repulsion = 14548.665397 eV Total energy + Delta-G solvation = -2545.815429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.18405 -37.78131 -36.08378 -34.18577 -32.93987 -29.04459 -27.68832 -26.37466 -24.58905 -23.24257 -22.55899 -21.13317 -20.66656 -18.27339 -17.86844 -16.84267 -16.73332 -16.24984 -15.89662 -15.50132 -15.23398 -14.94347 -14.54640 -14.45854 -13.87522 -13.72656 -13.35149 -12.98723 -12.83407 -12.69055 -12.50485 -12.40347 -12.05271 -11.98559 -11.90508 -11.66378 -11.38097 -11.29327 -10.92284 -10.70688 -10.54498 -10.22986 -8.97651 -8.71801 -8.23839 -6.32022 0.93594 1.43092 1.45610 1.53515 1.86106 2.54863 3.07127 3.14239 3.43126 3.61357 3.89504 4.03056 4.05112 4.08614 4.20210 4.31128 4.39481 4.42429 4.46977 4.59021 4.65522 4.68658 4.77929 4.82081 4.85863 4.89848 5.05698 5.07852 5.10020 5.11376 5.17154 5.28283 5.39045 5.50103 5.78804 6.30965 6.38374 6.57745 6.78492 7.41620 8.89613 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.005434 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.791357 B = 5151.069726 C = 5573.929450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.041 3.959 3 Si 0.929 3.071 4 H -0.301 1.301 5 H -0.316 1.316 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.029 0.971 9 C -0.017 4.017 10 C 0.111 3.889 11 N -0.689 5.689 12 C 0.064 3.936 13 C -0.099 4.099 14 C -0.013 4.013 15 H 0.103 0.897 16 C -0.126 4.126 17 C -0.121 4.121 18 C -0.055 4.055 19 S -0.363 6.363 20 C -0.194 4.194 21 C -0.169 4.169 22 H 0.263 0.737 23 H 0.020 0.980 24 H 0.067 0.933 25 H 0.340 0.660 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.129 4.545 17.474 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.158 4.158 3 Si 0.757 3.243 4 H -0.229 1.229 5 H -0.245 1.245 6 H -0.107 1.107 7 C -0.529 4.529 8 H 0.047 0.953 9 C -0.018 4.018 10 C -0.018 4.018 11 N -0.321 5.321 12 C -0.066 4.066 13 C -0.138 4.138 14 C -0.142 4.142 15 H 0.121 0.879 16 C -0.165 4.165 17 C -0.160 4.160 18 C -0.203 4.203 19 S -0.137 6.137 20 C -0.231 4.231 21 C -0.206 4.206 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.159 0.841 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.252 5.110 16.348 21.059 hybrid contribution -1.575 -0.146 0.575 1.683 sum 10.677 4.964 16.923 20.616 Atomic orbital electron populations 1.70059 1.08421 1.27899 1.52394 1.25633 0.94816 1.02344 0.92966 0.86178 0.82618 0.77804 0.77748 1.22934 1.24511 1.10662 1.20387 0.89732 0.92545 1.50256 0.95319 1.19388 0.91768 1.01568 0.89097 1.21337 0.97175 0.91094 0.92224 1.60582 1.10997 1.48188 1.12343 1.21960 0.99054 0.97055 0.88486 1.21485 0.99460 0.99949 0.92885 1.23856 0.90577 1.01637 0.98095 0.87920 1.22157 0.99272 0.97295 0.97779 1.21983 0.91396 1.01194 1.01459 1.24273 1.00286 1.03617 0.92088 1.88534 1.25964 1.74643 1.24551 1.22890 1.02226 0.93886 1.04144 1.22926 1.01873 0.94014 1.01831 0.92850 0.96185 0.91468 0.84061 0.95232 0.91603 0.91587 0.90330 0.91112 0.89026 0.90469 0.88607 0.87002 0.88146 0.91746 0.88588 0.87702 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.44 0.30 -58.79 16 2 C 0.04 2.35 4.95 84.65 0.42 2.77 16 3 Si 0.93 46.24 23.22 68.60 1.59 47.83 16 4 H -0.30 -15.19 6.87 99.48 0.68 -14.51 16 5 H -0.32 -16.09 7.11 99.48 0.71 -15.38 16 6 H -0.19 -8.54 5.41 99.48 0.54 -8.01 16 7 C -0.49 -27.77 8.80 25.60 0.23 -27.54 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C -0.02 -0.78 1.41 -52.93 -0.07 -0.86 16 10 C 0.11 4.43 5.61 86.30 0.48 4.91 16 11 N -0.69 -27.17 3.88 -513.88 -1.99 -29.17 16 12 C 0.06 2.01 5.62 86.30 0.49 2.50 16 13 C -0.10 -2.73 4.81 30.59 0.15 -2.58 16 14 C -0.01 -0.28 3.30 31.02 0.10 -0.18 16 15 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 16 C -0.13 -2.10 5.93 30.80 0.18 -1.92 16 17 C -0.12 -1.59 6.30 30.80 0.19 -1.40 16 18 C -0.05 -0.82 7.47 72.41 0.54 -0.28 16 19 S -0.36 -8.86 21.86 -56.49 -1.23 -10.10 16 20 C -0.19 -8.24 7.20 30.62 0.22 -8.02 16 21 C -0.17 -6.70 9.96 30.62 0.30 -6.40 16 22 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 2.41 8.08 -2.39 -0.02 2.39 16 25 H 0.34 14.95 7.14 -89.70 -0.64 14.31 16 26 H 0.03 0.88 8.14 -2.38 -0.02 0.87 16 27 H 0.07 2.14 7.31 -2.38 -0.02 2.12 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 1.32 7.78 -2.39 -0.02 1.30 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 2.98 6.14 -2.39 -0.01 2.96 16 37 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -65.92 312.33 2.07 -63.86 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.17 Total: 25.37 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.23 Total: -39.00 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -1.69 Total: -87.95 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.59 Total: 47.83 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.23 Total: -10.10 kcal Total: -65.92 2.07 -63.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715820311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.762 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds