Wall clock time and date at job start Mon Mar 30 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47202 * 2 1 4 4 C 1.50703 * 109.47406 * 240.00496 * 2 1 3 5 5 H 1.08000 * 119.99785 * 245.41751 * 4 2 1 6 6 C 1.37872 * 119.99949 * 65.13896 * 4 2 1 7 7 N 1.31515 * 120.00333 * 355.40780 * 6 4 2 8 8 Si 1.86806 * 119.99966 * 175.40707 * 6 4 2 9 9 H 1.48499 * 109.46949 * 95.00236 * 8 6 4 10 10 H 1.48496 * 109.46980 * 214.99870 * 8 6 4 11 11 H 1.48496 * 109.47115 * 335.00048 * 8 6 4 12 12 N 1.46899 * 109.47176 * 120.00093 * 2 1 3 13 13 C 1.46897 * 111.00105 * 275.00067 * 12 2 1 14 14 C 1.53384 * 109.47116 * 180.02562 * 13 12 2 15 15 C 1.50400 * 110.36534 * 166.46485 * 14 13 12 16 16 C 1.53403 * 116.00589 * 99.48182 * 15 14 13 17 17 H 1.09870 * 113.85421 * 181.48166 * 16 15 14 18 18 C 1.54662 * 107.36199 * 307.75785 * 16 15 14 19 19 C 1.52442 * 111.45757 * 82.26903 * 18 16 15 20 20 C 1.54659 * 111.45950 * 0.02562 * 19 18 16 21 21 H 1.09872 * 113.31884 * 151.13221 * 20 19 18 22 22 C 1.50412 * 110.36234 * 303.54024 * 14 13 12 23 23 S 1.84324 * 102.22031 * 28.69276 * 20 19 18 24 24 H 1.09000 * 109.47173 * 174.95050 * 1 2 3 25 25 H 1.08994 * 109.47518 * 294.95368 * 1 2 3 26 26 H 1.09006 * 109.47461 * 54.95679 * 1 2 3 27 27 H 0.96998 * 120.00275 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00024 * 151.05014 * 12 2 1 29 29 H 1.09000 * 109.47498 * 299.99981 * 13 12 2 30 30 H 1.09003 * 109.46882 * 60.00010 * 13 12 2 31 31 H 1.12713 * 103.55554 * 54.99894 * 14 13 12 32 32 H 1.10413 * 108.87472 * 222.10236 * 15 14 13 33 33 H 1.10418 * 108.92833 * 336.75525 * 15 14 13 34 34 H 1.09437 * 108.66398 * 201.71900 * 18 16 15 35 35 H 1.08595 * 109.97955 * 320.12450 * 18 16 15 36 36 H 1.08603 * 109.90043 * 237.81689 * 19 18 16 37 37 H 1.09440 * 108.45486 * 119.59108 * 19 18 16 38 38 H 1.10408 * 108.92812 * 23.24686 * 22 14 13 39 39 H 1.10413 * 108.87369 * 137.89928 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5792 -1.6366 -1.1339 6 6 1.7889 -0.1806 -2.4799 7 7 1.0420 0.8947 -2.6042 8 14 2.5200 -0.9903 -3.9964 9 1 1.5263 -1.9222 -4.5876 10 1 2.8741 0.0527 -4.9923 11 1 3.7405 -1.7451 -3.6147 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5975 -0.5349 3.5772 15 6 2.9825 0.4315 4.6634 16 6 1.9496 0.6359 5.7790 17 1 2.2558 1.3674 6.5395 18 6 0.6027 0.9833 5.1028 19 6 -0.1267 -0.2712 4.6358 20 6 0.6785 -1.5498 4.9658 21 1 0.0454 -2.4336 5.1249 22 6 1.7267 -1.7284 3.8595 23 16 1.6189 -1.0419 6.4676 24 1 -0.3633 -1.0237 -0.0905 25 1 -0.3634 0.4335 0.9317 26 1 -0.3634 0.5901 -0.8414 27 1 0.8704 1.2672 -3.4832 28 1 2.9173 -1.1204 1.0287 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6162 2.5525 31 1 3.5752 -0.9732 3.2274 32 1 3.9295 0.0956 5.1211 33 1 3.2051 1.4124 4.2078 34 1 -0.0305 1.5017 5.8294 35 1 0.7707 1.6482 4.2609 36 1 -0.3122 -0.2147 3.5672 37 1 -1.0914 -0.3228 5.1499 38 1 1.2086 -2.0216 2.9297 39 1 2.3704 -2.5858 4.1231 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716038976.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:44 Heat of formation + Delta-G solvation = -28.244937 kcal Electronic energy + Delta-G solvation = -17765.563444 eV Core-core repulsion = 15218.613984 eV Total energy + Delta-G solvation = -2546.949461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17658 -37.36099 -34.79350 -33.19322 -32.86847 -30.25250 -27.56858 -26.87585 -25.51212 -23.74836 -21.73756 -20.82748 -20.44300 -18.56935 -17.64989 -16.97507 -16.73705 -15.83726 -15.40293 -15.11701 -14.96965 -14.56011 -14.38551 -14.01974 -13.80166 -13.52997 -13.49552 -12.99828 -12.93009 -12.77013 -12.59520 -12.37163 -12.23826 -12.06197 -11.68070 -11.53026 -11.41106 -11.16919 -10.87015 -10.84852 -10.56704 -10.56491 -9.00442 -8.59320 -8.14178 -6.26635 1.04863 1.36091 1.41762 1.42964 1.53408 2.41554 3.16064 3.47546 3.56253 3.68948 3.79905 3.96388 4.04726 4.16917 4.22715 4.24252 4.43416 4.65997 4.74988 4.81828 4.85129 4.90108 4.95782 5.00841 5.07081 5.11837 5.21412 5.22842 5.26311 5.28284 5.30414 5.48754 5.59916 5.70798 5.87767 6.21966 6.48441 6.81721 7.02640 7.44250 8.92514 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043506 B = 0.004842 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.439745 B = 5781.206243 C = 5892.124300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.217 3.783 3 H -0.032 1.032 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.064 3.936 14 C -0.063 4.063 15 C -0.100 4.100 16 C -0.011 4.011 17 H 0.140 0.860 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.012 4.012 21 H 0.128 0.872 22 C -0.095 4.095 23 S -0.357 6.357 24 H 0.027 0.973 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 -0.548 15.700 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 H -0.015 1.015 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.065 4.065 14 C -0.082 4.082 15 C -0.139 4.139 16 C -0.139 4.139 17 H 0.157 0.843 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.140 4.140 21 H 0.146 0.854 22 C -0.134 4.134 23 S -0.129 6.129 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.227 -1.261 16.811 16.859 hybrid contribution 0.754 0.827 -2.398 2.647 sum 0.980 -0.434 14.412 14.452 Atomic orbital electron populations 1.21478 0.97696 0.99006 0.98212 1.18874 0.92626 0.90667 0.86986 1.01451 1.21598 1.35432 1.08629 0.91861 0.92296 1.25718 0.95289 0.95628 1.01945 1.70050 1.38267 1.23225 1.24226 0.85521 0.78882 0.78067 0.79008 1.20310 1.20981 1.19166 1.60625 1.31957 1.33276 1.05251 1.22335 0.99978 0.93281 0.90920 1.20326 0.98805 0.95105 0.93998 1.21503 0.98012 0.99706 0.94692 1.24363 0.98012 0.93214 0.98300 0.84261 1.22134 0.94694 0.98063 1.00969 1.22140 0.99448 0.92192 1.02230 1.24337 0.97039 1.01117 0.91473 0.85424 1.21398 0.96711 0.96751 0.98523 1.88125 1.73229 1.20811 1.30780 0.95359 0.95568 0.93563 0.92926 0.85346 0.97321 0.91522 0.93156 0.91129 0.90572 0.90062 0.90712 0.91129 0.90551 0.90018 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.11 9.20 71.98 0.66 -4.45 16 2 C 0.22 10.78 2.55 44.17 0.11 10.89 16 3 H -0.03 -1.79 7.80 -2.39 -0.02 -1.80 16 4 C -0.54 -29.06 8.50 25.60 0.22 -28.84 16 5 H 0.06 3.13 7.68 -2.91 -0.02 3.11 16 6 C 0.01 0.74 5.36 84.65 0.45 1.19 16 7 N -0.92 -52.64 11.58 21.45 0.25 -52.39 16 8 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 N -0.68 -27.26 5.11 -494.77 -2.53 -29.78 16 13 C 0.06 2.12 4.39 86.43 0.38 2.50 16 14 C -0.06 -1.67 1.73 -12.34 -0.02 -1.70 16 15 C -0.10 -2.20 4.51 29.89 0.13 -2.06 16 16 C -0.01 -0.22 4.58 31.30 0.14 -0.08 16 17 H 0.14 2.24 8.21 -1.92 -0.02 2.22 16 18 C -0.12 -2.43 5.11 30.98 0.16 -2.27 16 19 C -0.12 -2.72 5.11 30.97 0.16 -2.56 16 20 C -0.01 -0.27 4.58 31.31 0.14 -0.13 16 21 H 0.13 2.70 8.21 -1.92 -0.02 2.69 16 22 C -0.09 -2.49 4.42 29.91 0.13 -2.36 16 23 S -0.36 -8.61 22.15 -56.49 -1.25 -9.86 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.10 7.35 -2.39 -0.02 1.09 16 26 H 0.05 2.47 6.45 -2.38 -0.02 2.45 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.33 13.17 8.12 -89.69 -0.73 12.44 16 29 H 0.01 0.30 7.68 -2.39 -0.02 0.28 16 30 H 0.07 2.21 4.10 -2.39 -0.01 2.20 16 31 H 0.05 1.39 8.06 -0.34 0.00 1.39 16 32 H 0.07 1.49 8.26 -1.63 -0.01 1.48 16 33 H 0.08 1.60 7.59 -1.63 -0.01 1.59 16 34 H 0.08 1.42 8.18 -2.15 -0.02 1.40 16 35 H 0.07 1.61 6.67 -2.60 -0.02 1.59 16 36 H 0.07 1.85 6.44 -2.60 -0.02 1.83 16 37 H 0.08 1.53 8.18 -2.15 -0.02 1.51 16 38 H 0.08 2.50 6.90 -1.63 -0.01 2.49 16 39 H 0.06 1.49 8.26 -1.63 -0.01 1.48 16 Total: -1.00 -58.33 300.34 1.52 -56.81 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.35 Total: 19.95 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 2.67 Total: -29.86 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.28 Total: -82.18 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.25 Total: -9.86 kcal Total: -58.33 1.52 -56.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716038976.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.565 kcal (2) G-P(sol) polarization free energy of solvation -58.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds