Wall clock time and date at job start Mon Mar 30 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47270 * 2 1 4 4 C 1.50702 * 109.46918 * 120.00295 * 2 1 3 5 5 H 1.08001 * 120.00261 * 116.67970 * 4 2 1 6 6 C 1.37876 * 119.99813 * 296.67774 * 4 2 1 7 7 N 1.31520 * 120.00182 * 352.66850 * 6 4 2 8 8 Si 1.86806 * 119.99959 * 172.67177 * 6 4 2 9 9 H 1.48498 * 109.47047 * 265.06455 * 8 6 4 10 10 H 1.48498 * 109.46995 * 25.06777 * 8 6 4 11 11 H 1.48505 * 109.46842 * 145.06852 * 8 6 4 12 12 N 1.46903 * 109.47128 * 240.00071 * 2 1 3 13 13 C 1.46899 * 110.99915 * 85.00167 * 12 2 1 14 14 C 1.53380 * 109.46685 * 179.97438 * 13 12 2 15 15 C 1.50401 * 110.36008 * 166.46486 * 14 13 12 16 16 C 1.53401 * 116.00747 * 99.48501 * 15 14 13 17 17 H 1.09874 * 113.85148 * 181.47954 * 16 15 14 18 18 C 1.54660 * 107.35664 * 307.75578 * 16 15 14 19 19 C 1.52435 * 111.46155 * 82.27474 * 18 16 15 20 20 C 1.54661 * 111.45782 * 359.97438 * 19 18 16 21 21 H 1.09878 * 113.31538 * 151.12919 * 20 19 18 22 22 C 1.50398 * 110.36526 * 303.53968 * 14 13 12 23 23 S 1.84331 * 105.70942 * 56.31218 * 16 15 14 24 24 H 1.09001 * 109.47445 * 297.70577 * 1 2 3 25 25 H 1.09007 * 109.46819 * 57.70488 * 1 2 3 26 26 H 1.09000 * 109.47341 * 177.70374 * 1 2 3 27 27 H 0.96997 * 120.00327 * 180.02562 * 7 6 4 28 28 H 1.00902 * 110.99590 * 321.04331 * 12 2 1 29 29 H 1.08994 * 109.46843 * 299.99575 * 13 12 2 30 30 H 1.09000 * 109.46743 * 60.00450 * 13 12 2 31 31 H 1.12715 * 103.55738 * 55.00128 * 14 13 12 32 32 H 1.10432 * 108.87252 * 222.10291 * 15 14 13 33 33 H 1.10410 * 108.93182 * 336.75042 * 15 14 13 34 34 H 1.09448 * 108.65815 * 201.72565 * 18 16 15 35 35 H 1.08601 * 109.97995 * 320.12121 * 18 16 15 36 36 H 1.08612 * 109.90154 * 237.81930 * 19 18 16 37 37 H 1.09441 * 108.46078 * 119.58933 * 19 18 16 38 38 H 1.10403 * 108.93251 * 23.24860 * 22 14 13 39 39 H 1.10424 * 108.87728 * 137.89994 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6082 -1.6188 1.1323 6 6 1.7566 -0.2008 2.4815 7 7 1.1824 0.9764 2.6002 8 14 2.1987 -1.1825 4.0082 9 1 1.0171 -1.9637 4.4537 10 1 3.3155 -2.1095 3.6943 11 1 2.6150 -0.2543 5.0901 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5975 -0.5348 -3.5772 15 6 2.3628 0.2721 -4.8245 16 6 3.5705 1.0536 -5.3573 17 1 3.3532 1.6503 -6.2539 18 6 4.1312 1.8921 -4.1849 19 6 5.0438 1.0605 -3.2909 20 6 5.1602 -0.3955 -3.7993 21 1 6.1181 -0.8698 -3.5448 22 6 3.9340 -1.1597 -3.2854 23 16 4.9005 -0.1968 -5.6137 24 1 -0.3634 0.4778 0.9098 25 1 -0.3633 0.5491 -0.8688 26 1 -0.3634 -1.0268 -0.0412 27 1 0.9887 1.3351 3.4804 28 1 1.4495 -1.4979 -1.4100 29 1 1.0871 0.6163 -2.5525 30 1 2.7590 1.0461 -2.1181 31 1 1.8895 -1.4072 -3.6659 32 1 2.0021 -0.4007 -5.6225 33 1 1.5383 0.9832 -4.6413 34 1 4.7126 2.7235 -4.5956 35 1 3.3145 2.3034 -3.5990 36 1 4.6697 1.0683 -2.2713 37 1 6.0399 1.5140 -3.2950 38 1 4.0365 -1.2933 -2.1943 39 1 3.9529 -2.1782 -3.7116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716038977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:46 Heat of formation + Delta-G solvation = -12.658480 kcal Electronic energy + Delta-G solvation = -17745.745730 eV Core-core repulsion = 15199.472148 eV Total energy + Delta-G solvation = -2546.273581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05063 -35.79573 -33.13626 -31.95246 -31.56231 -28.59029 -25.79941 -25.07720 -24.47416 -22.40514 -20.30972 -19.86383 -19.27586 -16.73642 -16.30171 -15.75977 -14.74097 -14.41976 -14.07432 -13.76739 -13.57479 -13.38701 -12.97178 -12.80066 -12.52640 -12.39965 -11.79968 -11.67736 -11.59611 -11.00684 -10.98852 -10.83500 -10.52319 -10.46988 -10.38022 -10.22807 -10.15822 -9.85915 -9.65467 -9.51914 -9.03108 -8.35193 -7.57849 -7.24147 -6.01487 -4.01985 2.03272 2.35463 3.31304 3.38540 3.42523 4.42949 4.47775 4.70933 4.74750 4.87613 4.99589 5.13161 5.20598 5.27792 5.31537 5.39688 5.55455 5.73237 5.84203 5.88941 5.97401 6.03668 6.09071 6.15498 6.25934 6.34066 6.39669 6.54187 6.63375 6.75719 6.76896 7.03981 7.34130 7.62069 7.87348 8.22122 8.51980 8.60686 9.05004 9.62524 11.07411 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.035191 B = 0.005149 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.463582 B = 5436.285302 C = 5670.827934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.211 3.789 3 H 0.037 0.963 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.893 3.107 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.682 5.682 13 C 0.059 3.941 14 C -0.075 4.075 15 C -0.099 4.099 16 C -0.021 4.021 17 H 0.117 0.883 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.014 4.014 21 H 0.118 0.882 22 C -0.101 4.101 23 S -0.335 6.335 24 H 0.075 0.925 25 H 0.007 0.993 26 H 0.028 0.972 27 H 0.259 0.741 28 H 0.323 0.677 29 H 0.016 0.984 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 0.492 -13.805 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.311 5.311 13 C -0.071 4.071 14 C -0.094 4.094 15 C -0.138 4.138 16 C -0.149 4.149 17 H 0.135 0.865 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.142 4.142 21 H 0.136 0.864 22 C -0.140 4.140 23 S -0.108 6.108 24 H 0.094 0.906 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.116 0.164 -14.517 15.393 hybrid contribution -1.400 0.159 1.612 2.141 sum 3.716 0.323 -12.906 13.434 Atomic orbital electron populations 1.22378 1.01136 0.98658 1.00182 1.19152 0.89143 0.94731 0.86611 0.94552 1.21138 1.32882 1.09768 0.89629 0.91970 1.24948 0.95612 0.94837 0.99005 1.69949 1.43734 1.16465 1.23463 0.86560 0.78591 0.79952 0.82762 1.20911 1.19832 1.21431 1.60792 1.57726 1.09045 1.03578 1.22302 0.97880 0.96042 0.90885 1.20392 0.97141 0.98176 0.93664 1.21541 0.96167 0.98797 0.97331 1.24243 0.95064 0.95512 1.00099 0.86528 1.22130 0.99717 0.98450 0.95481 1.22160 1.00129 0.92805 1.01077 1.24314 1.01716 0.98872 0.89303 0.86437 1.21472 0.90840 0.97459 1.04236 1.88007 1.50730 1.57263 1.14796 0.90615 0.97367 0.95261 0.93107 0.86096 0.96572 0.91418 0.92753 0.91938 0.91384 0.91650 0.90265 0.89193 0.91720 0.87794 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.00 37.16 0.33 -3.48 16 2 C 0.21 5.10 2.46 -68.86 -0.17 4.93 16 3 H 0.04 0.98 7.80 -51.93 -0.40 0.57 16 4 C -0.50 -13.34 8.79 -34.44 -0.30 -13.65 16 5 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 6 C 0.06 1.55 5.21 -17.82 -0.09 1.46 16 7 N -0.90 -25.46 11.91 55.43 0.66 -24.80 16 8 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.68 -13.44 5.04 -107.74 -0.54 -13.99 16 13 C 0.06 0.97 4.39 -3.63 -0.02 0.95 16 14 C -0.07 -1.02 1.73 -93.02 -0.16 -1.18 16 15 C -0.10 -1.18 4.51 -27.82 -0.13 -1.31 16 16 C -0.02 -0.24 4.58 -25.65 -0.12 -0.36 16 17 H 0.12 1.15 8.21 -51.43 -0.42 0.73 16 18 C -0.12 -1.37 5.11 -26.15 -0.13 -1.50 16 19 C -0.12 -1.53 5.11 -26.15 -0.13 -1.67 16 20 C -0.01 -0.18 4.58 -25.68 -0.12 -0.30 16 21 H 0.12 1.39 8.22 -51.43 -0.42 0.97 16 22 C -0.10 -1.40 4.42 -27.85 -0.12 -1.52 16 23 S -0.34 -4.45 22.15 -107.50 -2.38 -6.83 16 24 H 0.07 1.96 6.58 -51.93 -0.34 1.62 16 25 H 0.01 0.16 7.51 -51.92 -0.39 -0.23 16 26 H 0.03 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.32 6.14 8.31 -39.29 -0.33 5.81 16 29 H 0.02 0.27 7.10 -51.93 -0.37 -0.09 16 30 H 0.07 1.16 4.78 -51.93 -0.25 0.91 16 31 H 0.05 0.76 8.06 -49.75 -0.40 0.36 16 32 H 0.06 0.73 8.26 -51.11 -0.42 0.30 16 33 H 0.07 0.77 7.59 -51.12 -0.39 0.39 16 34 H 0.06 0.68 8.18 -51.68 -0.42 0.26 16 35 H 0.08 0.94 6.67 -52.15 -0.35 0.59 16 36 H 0.09 1.28 6.44 -52.15 -0.34 0.94 16 37 H 0.06 0.74 8.18 -51.68 -0.42 0.32 16 38 H 0.10 1.66 6.90 -51.13 -0.35 1.31 16 39 H 0.06 0.76 8.26 -51.11 -0.42 0.34 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -27.64 301.15 -10.31 -37.96 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.41 Total: 4.55 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.16 Total: -17.62 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.12 Total: -38.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.38 Total: -6.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.64 -10.31 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716038977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.297 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds