Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47390 * 2 1 4 4 H 1.09000 * 109.47018 * 174.08406 * 3 2 1 5 5 C 1.50700 * 109.47129 * 54.08961 * 3 2 1 6 6 H 1.07994 * 120.00057 * 240.00442 * 5 3 2 7 7 C 1.37882 * 120.00042 * 59.99541 * 5 3 2 8 8 N 1.31512 * 119.99861 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47286 * 120.00223 * 9 7 5 12 12 H 1.48497 * 109.47284 * 240.00473 * 9 7 5 13 13 N 1.46897 * 109.47143 * 294.08811 * 3 2 1 14 14 C 1.46898 * 111.00131 * 275.74078 * 13 3 2 15 15 C 1.52999 * 109.47088 * 176.24260 * 14 13 3 16 16 C 1.53871 * 113.59401 * 274.19353 * 15 14 13 17 17 C 1.53499 * 86.86941 * 220.38196 * 16 15 14 18 18 C 1.52595 * 120.61695 * 149.61545 * 17 16 15 19 19 S 1.81506 * 89.77081 * 93.86650 * 18 17 16 20 20 C 1.52594 * 120.50102 * 260.60462 * 17 16 15 21 21 C 1.53322 * 87.60551 * 25.08872 * 17 16 15 22 22 H 1.08991 * 109.47015 * 58.55575 * 1 2 3 23 23 H 1.09004 * 109.47151 * 178.55606 * 1 2 3 24 24 H 1.08996 * 109.47017 * 298.55260 * 1 2 3 25 25 H 1.09004 * 109.46880 * 239.99822 * 2 1 3 26 26 H 1.09000 * 109.47279 * 120.00306 * 2 1 3 27 27 H 0.97003 * 120.00091 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00037 * 39.69843 * 13 3 2 29 29 H 1.09000 * 109.47070 * 56.24010 * 14 13 3 30 30 H 1.08996 * 109.47108 * 296.24396 * 14 13 3 31 31 H 1.09000 * 112.83821 * 45.33267 * 15 14 13 32 32 H 1.09002 * 113.64275 * 334.85797 * 16 15 14 33 33 H 1.09002 * 113.63997 * 105.84686 * 16 15 14 34 34 H 1.08996 * 113.17340 * 209.08886 * 18 17 16 35 35 H 1.09002 * 113.16485 * 338.64606 * 18 17 16 36 36 H 1.08999 * 113.16820 * 21.26059 * 20 17 16 37 37 H 1.08994 * 113.17374 * 150.75855 * 20 17 16 38 38 H 1.09004 * 113.64411 * 220.40446 * 21 17 16 39 39 H 1.08999 * 113.64068 * 89.42416 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4219 2.1938 1.1508 6 1 0.8150 3.0669 0.9618 7 6 1.6309 1.7665 2.4449 8 7 2.3702 0.7035 2.6751 9 14 0.8652 2.6983 3.8714 10 1 0.0854 3.8492 3.3492 11 1 -0.0363 1.7924 4.6275 12 1 1.9374 3.1940 4.7713 13 7 1.6704 2.0925 -1.2643 14 6 2.6516 1.7945 -2.3161 15 6 2.1854 2.4090 -3.6375 16 6 1.2233 1.5073 -4.4305 17 6 1.9790 1.9520 -5.6904 18 6 2.1020 1.0200 -6.8924 19 16 0.6306 1.7868 -7.6282 20 6 1.4129 3.0501 -6.5860 21 6 3.1889 2.2268 -4.7896 22 1 -0.3633 0.5361 -0.8767 23 1 -0.3634 -1.0274 -0.0259 24 1 -0.3633 0.4912 0.9026 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.5176 0.4031 3.5855 28 1 0.7407 1.8243 -1.5506 29 1 2.7449 0.7145 -2.4306 30 1 3.6185 2.2155 -2.0408 31 1 1.8308 3.4336 -3.5257 32 1 1.3338 0.4463 -4.2063 33 1 0.1863 1.8419 -4.4009 34 1 3.0087 1.1873 -7.4737 35 1 1.9565 -0.0298 -6.6377 36 1 0.6935 3.6909 -6.0762 37 1 2.1834 3.6193 -7.1059 38 1 3.7281 3.1382 -5.0478 39 1 3.8456 1.3658 -4.6651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717872236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = 31.650923 kcal Electronic energy + Delta-G solvation = -17200.395976 eV Core-core repulsion = 14656.043795 eV Total energy + Delta-G solvation = -2544.352181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95492 -36.44113 -33.56326 -31.83493 -30.19148 -26.78368 -26.58274 -25.83440 -24.54845 -23.13551 -20.47187 -19.24879 -18.45009 -16.61040 -16.18732 -15.51786 -15.27412 -14.80448 -14.56489 -14.11508 -13.40629 -13.25038 -13.09500 -12.79037 -12.35438 -12.24224 -12.06387 -11.87399 -11.63481 -11.16759 -10.92782 -10.81227 -10.56008 -10.48791 -10.42754 -10.28546 -9.93759 -9.89639 -9.61312 -9.45320 -8.92338 -8.32805 -7.93124 -7.16226 -5.95607 -3.96766 1.65387 1.78117 3.32516 3.40840 3.45822 4.02326 4.21815 4.46113 4.66466 4.76855 4.82092 5.08539 5.22092 5.24840 5.36367 5.41444 5.46409 5.68613 5.75102 5.76626 5.87653 5.99753 6.19755 6.25162 6.36187 6.38049 6.47259 6.60384 6.64841 6.91989 7.30622 7.33155 7.52900 7.72684 7.92243 8.32079 8.59730 8.67495 9.09564 9.67050 11.11581 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043684 B = 0.004031 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.808853 B = 6943.932309 C = 6999.238754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.144 4.144 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.070 3.930 15 C -0.103 4.103 16 C -0.104 4.104 17 C -0.093 4.093 18 C -0.067 4.067 19 S -0.306 6.306 20 C -0.055 4.055 21 C -0.112 4.112 22 H 0.030 0.970 23 H 0.021 0.979 24 H 0.065 0.935 25 H 0.010 0.990 26 H 0.091 0.909 27 H 0.258 0.742 28 H 0.326 0.674 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 1.016 -16.296 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.184 4.184 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.060 4.060 15 C -0.121 4.121 16 C -0.141 4.141 17 C -0.094 4.094 18 C -0.215 4.215 19 S -0.079 6.079 20 C -0.203 4.203 21 C -0.153 4.153 22 H 0.049 0.951 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.028 0.972 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.074 1.273 -16.894 16.942 hybrid contribution 0.285 -0.414 1.179 1.281 sum 0.210 0.859 -15.716 15.740 Atomic orbital electron populations 1.21560 0.97701 0.97930 1.01259 1.22092 0.95006 1.01232 1.00076 1.19193 0.95969 0.88597 0.85616 0.95063 1.21119 1.30254 1.11417 0.89781 0.92032 1.24914 0.95612 0.95182 0.98710 1.69896 1.39400 1.24242 1.20145 0.86538 0.79022 0.79937 0.82518 1.19758 1.21278 1.21219 1.60862 1.04042 1.63082 1.03506 1.21858 0.97160 0.96514 0.90477 1.22558 0.95851 1.00282 0.93436 1.22887 0.99007 1.00403 0.91802 1.22580 0.99987 0.93625 0.93221 1.24280 0.96488 1.03569 0.97152 1.88943 1.35118 1.16900 1.66934 1.24073 1.00970 0.98802 0.96443 1.22899 0.95286 1.02162 0.94944 0.95130 0.95991 0.91584 0.97158 0.89084 0.93239 0.85634 0.96282 0.91843 0.88465 0.89444 0.90726 0.87926 0.88687 0.88401 0.87738 0.90977 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.39 37.16 0.35 -2.34 16 2 C -0.14 -3.34 5.50 -26.73 -0.15 -3.48 16 3 C 0.21 5.20 2.33 -68.87 -0.16 5.04 16 4 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 5 C -0.49 -13.05 7.35 -34.44 -0.25 -13.30 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.52 5.22 -17.82 -0.09 1.43 16 8 N -0.90 -25.17 11.39 55.43 0.63 -24.54 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.68 -13.89 6.25 -107.96 -0.68 -14.57 16 14 C 0.07 1.16 5.31 -3.83 -0.02 1.14 16 15 C -0.10 -1.30 3.86 -89.71 -0.35 -1.65 16 16 C -0.10 -1.21 7.35 -26.02 -0.19 -1.41 16 17 C -0.09 -0.91 0.93 -154.50 -0.14 -1.06 16 18 C -0.07 -0.63 7.69 36.95 0.28 -0.34 16 19 S -0.31 -3.52 24.79 -107.50 -2.66 -6.18 16 20 C -0.05 -0.52 7.69 36.95 0.28 -0.24 16 21 C -0.11 -1.13 7.35 -26.11 -0.19 -1.32 16 22 H 0.03 0.58 6.42 -51.93 -0.33 0.25 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 1.54 7.05 -51.93 -0.37 1.17 16 25 H 0.01 0.21 7.24 -51.93 -0.38 -0.17 16 26 H 0.09 2.37 6.25 -51.93 -0.32 2.05 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.33 6.36 6.56 -39.29 -0.26 6.10 16 29 H 0.02 0.32 6.97 -51.93 -0.36 -0.04 16 30 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -27.69 317.01 -10.19 -37.88 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.61 Total: 3.97 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.63 Total: -17.53 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.04 Total: -39.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.66 Total: -6.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.69 -10.19 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717872236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.532 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds