Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47390 * 2 1 4 4 H 1.09000 * 109.47018 * 174.08406 * 3 2 1 5 5 C 1.50700 * 109.47129 * 54.08961 * 3 2 1 6 6 H 1.07994 * 120.00057 * 240.00442 * 5 3 2 7 7 C 1.37882 * 120.00042 * 59.99541 * 5 3 2 8 8 N 1.31512 * 119.99861 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47286 * 120.00223 * 9 7 5 12 12 H 1.48497 * 109.47284 * 240.00473 * 9 7 5 13 13 N 1.46897 * 109.47143 * 294.08811 * 3 2 1 14 14 C 1.46898 * 111.00131 * 275.74078 * 13 3 2 15 15 C 1.52999 * 109.47088 * 176.24260 * 14 13 3 16 16 C 1.53871 * 113.59401 * 274.19353 * 15 14 13 17 17 C 1.53499 * 86.86941 * 220.38196 * 16 15 14 18 18 C 1.52595 * 120.61695 * 149.61545 * 17 16 15 19 19 S 1.81506 * 89.77081 * 93.86650 * 18 17 16 20 20 C 1.52594 * 120.50102 * 260.60462 * 17 16 15 21 21 C 1.53322 * 87.60551 * 25.08872 * 17 16 15 22 22 H 1.08991 * 109.47015 * 58.55575 * 1 2 3 23 23 H 1.09004 * 109.47151 * 178.55606 * 1 2 3 24 24 H 1.08996 * 109.47017 * 298.55260 * 1 2 3 25 25 H 1.09004 * 109.46880 * 239.99822 * 2 1 3 26 26 H 1.09000 * 109.47279 * 120.00306 * 2 1 3 27 27 H 0.97003 * 120.00091 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00037 * 39.69843 * 13 3 2 29 29 H 1.09000 * 109.47070 * 56.24010 * 14 13 3 30 30 H 1.08996 * 109.47108 * 296.24396 * 14 13 3 31 31 H 1.09000 * 112.83821 * 45.33267 * 15 14 13 32 32 H 1.09002 * 113.64275 * 334.85797 * 16 15 14 33 33 H 1.09002 * 113.63997 * 105.84686 * 16 15 14 34 34 H 1.08996 * 113.17340 * 209.08886 * 18 17 16 35 35 H 1.09002 * 113.16485 * 338.64606 * 18 17 16 36 36 H 1.08999 * 113.16820 * 21.26059 * 20 17 16 37 37 H 1.08994 * 113.17374 * 150.75855 * 20 17 16 38 38 H 1.09004 * 113.64411 * 220.40446 * 21 17 16 39 39 H 1.08999 * 113.64068 * 89.42416 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4219 2.1938 1.1508 6 1 0.8150 3.0669 0.9618 7 6 1.6309 1.7665 2.4449 8 7 2.3702 0.7035 2.6751 9 14 0.8652 2.6983 3.8714 10 1 0.0854 3.8492 3.3492 11 1 -0.0363 1.7924 4.6275 12 1 1.9374 3.1940 4.7713 13 7 1.6704 2.0925 -1.2643 14 6 2.6516 1.7945 -2.3161 15 6 2.1854 2.4090 -3.6375 16 6 1.2233 1.5073 -4.4305 17 6 1.9790 1.9520 -5.6904 18 6 2.1020 1.0200 -6.8924 19 16 0.6306 1.7868 -7.6282 20 6 1.4129 3.0501 -6.5860 21 6 3.1889 2.2268 -4.7896 22 1 -0.3633 0.5361 -0.8767 23 1 -0.3634 -1.0274 -0.0259 24 1 -0.3633 0.4912 0.9026 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.5176 0.4031 3.5855 28 1 0.7407 1.8243 -1.5506 29 1 2.7449 0.7145 -2.4306 30 1 3.6185 2.2155 -2.0408 31 1 1.8308 3.4336 -3.5257 32 1 1.3338 0.4463 -4.2063 33 1 0.1863 1.8419 -4.4009 34 1 3.0087 1.1873 -7.4737 35 1 1.9565 -0.0298 -6.6377 36 1 0.6935 3.6909 -6.0762 37 1 2.1834 3.6193 -7.1059 38 1 3.7281 3.1382 -5.0478 39 1 3.8456 1.3658 -4.6651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717872236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = 16.660824 kcal Electronic energy + Delta-G solvation = -17201.045996 eV Core-core repulsion = 14656.043795 eV Total energy + Delta-G solvation = -2545.002201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88085 -38.15564 -34.95464 -33.50659 -31.77569 -28.57986 -27.32230 -26.73805 -26.14950 -24.92522 -21.63412 -21.10073 -19.30466 -18.11966 -17.43300 -16.78389 -16.73884 -16.05550 -15.81007 -15.44217 -14.98012 -14.70622 -14.28670 -13.98670 -13.94554 -13.52754 -13.18972 -13.06558 -13.05243 -12.79421 -12.47873 -12.40866 -12.07997 -11.90792 -11.78653 -11.50483 -11.34134 -11.30720 -11.15615 -10.88209 -10.58352 -10.41216 -8.84231 -8.80943 -8.03199 -6.11167 0.90460 0.98233 1.42652 1.45797 1.56671 2.47700 3.20885 3.25878 3.40148 3.71766 3.75300 3.94140 4.07060 4.39553 4.44136 4.51179 4.52541 4.59856 4.67699 4.69381 4.71481 4.79102 4.90141 4.95321 4.98664 4.99809 5.14618 5.20613 5.32667 5.42969 5.47412 5.61222 5.71118 5.77523 5.90012 6.36559 6.75260 6.94516 7.04872 7.57041 9.02366 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043684 B = 0.004031 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.808853 B = 6943.932309 C = 6999.238754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C 0.219 3.781 4 H -0.004 1.004 5 C -0.498 4.498 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.688 5.688 14 C 0.073 3.927 15 C -0.102 4.102 16 C -0.105 4.105 17 C -0.083 4.083 18 C -0.050 4.050 19 S -0.367 6.367 20 C -0.041 4.041 21 C -0.098 4.098 22 H 0.049 0.951 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.258 0.742 28 H 0.331 0.669 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 1.463 -17.494 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.111 3.889 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.120 4.120 16 C -0.143 4.143 17 C -0.085 4.085 18 C -0.198 4.198 19 S -0.141 6.141 20 C -0.188 4.188 21 C -0.139 4.139 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.047 1.726 -18.111 18.193 hybrid contribution 0.308 -0.555 1.537 1.663 sum 0.261 1.171 -16.574 16.617 Atomic orbital electron populations 1.21446 0.96039 0.99228 1.00862 1.21932 0.96404 1.00130 0.99216 1.18939 0.93539 0.89442 0.87013 0.98639 1.21344 1.30094 1.11272 0.90991 0.93025 1.25585 0.96050 0.95916 1.00957 1.70022 1.40366 1.25346 1.20506 0.85633 0.78227 0.78865 0.79671 1.19351 1.20877 1.21069 1.60730 1.05130 1.62779 1.03269 1.21896 0.95865 0.96684 0.91253 1.22468 0.97640 0.99853 0.92067 1.22856 0.98612 0.99940 0.92842 1.22408 0.99226 0.94022 0.92812 1.24328 0.95824 1.03372 0.96297 1.89245 1.37277 1.19655 1.67909 1.24143 1.01047 0.98159 0.95482 1.22849 0.94936 1.03304 0.92807 0.93205 0.93975 0.94068 0.95557 0.92286 0.93301 0.85016 0.96427 0.93015 0.88886 0.89783 0.91381 0.85734 0.88481 0.88492 0.85523 0.89225 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.39 71.98 0.68 -4.22 16 2 C -0.14 -6.34 5.50 30.59 0.17 -6.17 16 3 C 0.22 10.80 2.33 44.17 0.10 10.90 16 4 H 0.00 -0.24 7.86 -2.39 -0.02 -0.26 16 5 C -0.50 -27.00 7.35 25.60 0.19 -26.81 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.70 5.22 84.66 0.44 1.14 16 8 N -0.92 -52.58 11.39 21.45 0.24 -52.33 16 9 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.69 -27.77 6.25 -495.48 -3.10 -30.86 16 14 C 0.07 2.35 5.31 86.30 0.46 2.81 16 15 C -0.10 -2.40 3.86 -10.21 -0.04 -2.44 16 16 C -0.11 -2.27 7.35 31.06 0.23 -2.04 16 17 C -0.08 -1.41 0.93 -52.18 -0.05 -1.46 16 18 C -0.05 -0.81 7.69 71.85 0.55 -0.25 16 19 S -0.37 -7.89 24.79 -56.49 -1.40 -9.29 16 20 C -0.04 -0.66 7.69 71.85 0.55 -0.11 16 21 C -0.10 -1.68 7.35 31.00 0.23 -1.45 16 22 H 0.05 1.84 6.42 -2.39 -0.02 1.82 16 23 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.04 1.89 7.05 -2.39 -0.02 1.88 16 25 H 0.03 1.10 7.24 -2.38 -0.02 1.08 16 26 H 0.06 3.13 6.25 -2.39 -0.01 3.11 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.33 12.64 6.56 -89.69 -0.59 12.05 16 29 H 0.02 0.58 6.97 -2.39 -0.02 0.56 16 30 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 1.89 7.92 -2.39 -0.02 1.87 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -59.97 317.01 1.71 -58.26 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.43 Total: 18.57 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.51 Total: -30.10 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.85 Total: -83.20 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.40 Total: -9.29 kcal Total: -59.97 1.71 -58.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717872236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.922 kcal (2) G-P(sol) polarization free energy of solvation -59.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds