Wall clock time and date at job start Mon Mar 30 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52997 * 109.46848 * 66.04509 * 3 2 1 5 5 C 1.50706 * 109.47203 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99617 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99728 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47167 * 90.00414 * 9 7 5 11 11 H 1.48504 * 109.47273 * 210.00001 * 9 7 5 12 12 H 1.48501 * 109.47513 * 330.00244 * 9 7 5 13 13 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 14 14 C 1.53005 * 109.46590 * 293.95038 * 13 2 1 15 15 C 1.53871 * 113.59768 * 274.18650 * 14 13 2 16 16 C 1.53497 * 86.87318 * 220.38198 * 15 14 13 17 17 C 1.52592 * 120.61238 * 149.62383 * 16 15 14 18 18 S 1.81497 * 89.77132 * 93.86589 * 17 16 15 19 19 C 1.52591 * 120.50068 * 260.60703 * 16 15 14 20 20 C 1.53327 * 87.60224 * 25.09301 * 16 15 14 21 21 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 22 22 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 24 24 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 25 25 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 26 26 H 1.08998 * 109.47584 * 300.00097 * 4 3 2 27 27 H 1.09005 * 109.46901 * 60.00396 * 4 3 2 28 28 H 0.97010 * 119.99768 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47196 * 53.94614 * 13 2 1 30 30 H 1.09000 * 109.47010 * 173.95423 * 13 2 1 31 31 H 1.08997 * 112.83954 * 45.33305 * 14 13 2 32 32 H 1.08998 * 113.63912 * 334.86906 * 15 14 13 33 33 H 1.09004 * 113.63730 * 105.84770 * 15 14 13 34 34 H 1.09004 * 113.16653 * 209.08650 * 17 16 15 35 35 H 1.08996 * 113.16692 * 338.63646 * 17 16 15 36 36 H 1.09002 * 113.16443 * 21.27045 * 19 16 15 37 37 H 1.09003 * 113.16963 * 150.76403 * 19 16 15 38 38 H 1.09005 * 113.64191 * 220.39904 * 20 16 15 39 39 H 1.09001 * 113.72276 * 89.42887 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1719 3.4642 1.3186 6 1 2.7199 3.8323 0.4638 7 6 1.9660 4.2816 2.4096 8 7 1.2983 3.8335 3.4502 9 14 2.6354 6.0255 2.4096 10 1 1.6185 6.9461 1.8408 11 1 2.9500 6.4350 3.8020 12 1 3.8699 6.0819 1.5862 13 6 1.9955 -0.7659 -1.1376 14 6 1.6315 -2.2426 -0.9703 15 6 2.6370 -3.0316 -0.1135 16 6 2.4676 -4.1777 -1.1204 17 6 3.6166 -5.1417 -1.4011 18 16 2.9580 -6.2796 -0.1499 19 6 1.5442 -5.3519 -0.8091 20 6 2.0644 -3.1219 -2.1566 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.0797 1.3445 -0.1082 25 1 1.5611 1.9274 -0.8309 26 1 0.5471 2.0844 1.4265 27 1 2.0658 1.5015 2.1492 28 1 1.1530 4.4088 4.2177 29 1 1.5611 -0.3872 -2.0628 30 1 3.0798 -0.6610 -1.1756 31 1 0.5936 -2.3914 -0.6729 32 1 3.6381 -2.6004 -0.1064 33 1 2.2694 -3.2680 0.8850 34 1 3.5938 -5.5539 -2.4099 35 1 4.5926 -4.7337 -1.1383 36 1 0.7942 -5.1189 -0.0532 37 1 1.1110 -5.8050 -1.7008 38 1 1.2377 -3.4306 -2.7964 39 1 2.9054 -2.7150 -2.7181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718277815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:32 Heat of formation + Delta-G solvation = 36.639706 kcal Electronic energy + Delta-G solvation = -16790.513979 eV Core-core repulsion = 14246.378127 eV Total energy + Delta-G solvation = -2544.135851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10252 -36.95764 -33.44752 -32.54123 -29.64440 -27.08841 -26.63423 -25.87905 -25.52855 -22.99468 -20.28697 -19.82098 -18.52704 -16.68757 -16.45441 -15.57592 -15.41337 -14.86587 -14.74479 -14.42939 -14.27192 -13.32411 -13.19927 -12.96187 -12.61927 -12.32014 -12.18548 -11.88797 -11.66544 -11.28078 -11.14641 -10.99912 -10.86151 -10.77447 -10.57609 -10.39438 -10.32915 -9.91226 -9.80702 -9.29695 -9.09914 -8.31639 -7.96071 -7.67272 -5.98102 -4.00445 1.61526 1.73759 3.32645 3.38982 3.42153 3.94310 4.14238 4.36591 4.50948 4.58187 4.71691 4.92915 5.02600 5.15730 5.19577 5.35149 5.37750 5.38830 5.57134 5.64052 5.67002 5.70629 5.84758 5.94098 5.98237 6.11547 6.20732 6.30043 6.43959 6.48642 6.56783 6.99575 7.53237 7.60741 7.82144 7.92652 8.10712 8.45519 9.06998 9.63102 11.13252 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043479 B = 0.003417 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.841725 B = 8191.593107 C = 8307.619240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.065 3.935 14 C -0.102 4.102 15 C -0.089 4.089 16 C -0.096 4.096 17 C -0.067 4.067 18 S -0.301 6.301 19 C -0.057 4.057 20 C -0.114 4.114 21 H 0.016 0.984 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.024 0.976 28 H 0.260 0.740 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -16.998 -11.930 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.097 4.097 17 C -0.216 4.216 18 S -0.074 6.074 19 C -0.205 4.205 20 C -0.154 4.154 21 H 0.035 0.965 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.160 -18.242 -10.343 21.002 hybrid contribution -0.238 2.055 -1.419 2.509 sum 0.922 -16.186 -11.762 20.030 Atomic orbital electron populations 1.22402 0.88331 1.00450 1.01115 1.62072 1.07416 1.15814 1.41101 1.22342 0.98434 0.85284 1.00310 1.19092 0.96882 0.93982 0.91009 1.21204 1.35122 0.97870 1.01905 0.92858 1.24989 0.95330 0.98432 0.95568 1.69973 1.40852 1.36337 1.06059 0.86607 0.79319 0.84919 0.77215 1.20745 1.21198 1.19896 1.22077 0.99853 0.92321 0.92136 1.22520 0.99893 0.93825 0.95823 1.22748 1.00303 0.92181 0.97398 1.22642 0.93104 0.93327 1.00629 1.24266 1.02844 0.95317 0.99141 1.88990 1.10080 1.56683 1.51634 1.24071 0.98611 0.94789 1.03032 1.22922 1.01348 0.95213 0.95955 0.96548 0.92516 0.90511 0.92264 0.96386 0.96500 0.95728 0.93017 0.95536 0.91100 0.88929 0.89152 0.90490 0.87997 0.88569 0.88440 0.87833 0.91130 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.15 60.06 0.55 0.96 16 2 N -0.54 -9.51 4.76 -242.92 -1.16 -10.67 16 3 C 0.06 1.32 4.90 -3.82 -0.02 1.31 16 4 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 5 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.06 0.88 4.78 -3.82 -0.02 0.86 16 14 C -0.10 -1.11 3.69 -89.71 -0.33 -1.44 16 15 C -0.09 -0.97 7.35 -26.02 -0.19 -1.16 16 16 C -0.10 -0.84 0.93 -154.50 -0.14 -0.99 16 17 C -0.07 -0.58 7.69 36.95 0.28 -0.29 16 18 S -0.30 -3.31 24.79 -107.50 -2.66 -5.97 16 19 C -0.06 -0.49 7.69 36.95 0.28 -0.21 16 20 C -0.11 -0.95 7.36 -26.11 -0.19 -1.14 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.06 0.78 6.16 -51.93 -0.32 0.46 16 23 H 0.08 1.43 6.47 -51.93 -0.34 1.09 16 24 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 25 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 26 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.96 7.66 -51.93 -0.40 0.56 16 31 H 0.09 1.04 6.23 -51.93 -0.32 0.72 16 32 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -30.28 321.15 -10.32 -40.59 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.73 Total: -4.14 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.33 Total: -15.09 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.42 Total: -36.89 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.66 Total: -5.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.28 -10.32 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718277815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.235 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds