Wall clock time and date at job start Mon Mar 30 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52997 * 109.46848 * 66.04509 * 3 2 1 5 5 C 1.50706 * 109.47203 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99617 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99728 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47167 * 90.00414 * 9 7 5 11 11 H 1.48504 * 109.47273 * 210.00001 * 9 7 5 12 12 H 1.48501 * 109.47513 * 330.00244 * 9 7 5 13 13 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 14 14 C 1.53005 * 109.46590 * 293.95038 * 13 2 1 15 15 C 1.53871 * 113.59768 * 274.18650 * 14 13 2 16 16 C 1.53497 * 86.87318 * 220.38198 * 15 14 13 17 17 C 1.52592 * 120.61238 * 149.62383 * 16 15 14 18 18 S 1.81497 * 89.77132 * 93.86589 * 17 16 15 19 19 C 1.52591 * 120.50068 * 260.60703 * 16 15 14 20 20 C 1.53327 * 87.60224 * 25.09301 * 16 15 14 21 21 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 22 22 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 24 24 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 25 25 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 26 26 H 1.08998 * 109.47584 * 300.00097 * 4 3 2 27 27 H 1.09005 * 109.46901 * 60.00396 * 4 3 2 28 28 H 0.97010 * 119.99768 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47196 * 53.94614 * 13 2 1 30 30 H 1.09000 * 109.47010 * 173.95423 * 13 2 1 31 31 H 1.08997 * 112.83954 * 45.33305 * 14 13 2 32 32 H 1.08998 * 113.63912 * 334.86906 * 15 14 13 33 33 H 1.09004 * 113.63730 * 105.84770 * 15 14 13 34 34 H 1.09004 * 113.16653 * 209.08650 * 17 16 15 35 35 H 1.08996 * 113.16692 * 338.63646 * 17 16 15 36 36 H 1.09002 * 113.16443 * 21.27045 * 19 16 15 37 37 H 1.09003 * 113.16963 * 150.76403 * 19 16 15 38 38 H 1.09005 * 113.64191 * 220.39904 * 20 16 15 39 39 H 1.09001 * 113.72276 * 89.42887 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1719 3.4642 1.3186 6 1 2.7199 3.8323 0.4638 7 6 1.9660 4.2816 2.4096 8 7 1.2983 3.8335 3.4502 9 14 2.6354 6.0255 2.4096 10 1 1.6185 6.9461 1.8408 11 1 2.9500 6.4350 3.8020 12 1 3.8699 6.0819 1.5862 13 6 1.9955 -0.7659 -1.1376 14 6 1.6315 -2.2426 -0.9703 15 6 2.6370 -3.0316 -0.1135 16 6 2.4676 -4.1777 -1.1204 17 6 3.6166 -5.1417 -1.4011 18 16 2.9580 -6.2796 -0.1499 19 6 1.5442 -5.3519 -0.8091 20 6 2.0644 -3.1219 -2.1566 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.0797 1.3445 -0.1082 25 1 1.5611 1.9274 -0.8309 26 1 0.5471 2.0844 1.4265 27 1 2.0658 1.5015 2.1492 28 1 1.1530 4.4088 4.2177 29 1 1.5611 -0.3872 -2.0628 30 1 3.0798 -0.6610 -1.1756 31 1 0.5936 -2.3914 -0.6729 32 1 3.6381 -2.6004 -0.1064 33 1 2.2694 -3.2680 0.8850 34 1 3.5938 -5.5539 -2.4099 35 1 4.5926 -4.7337 -1.1383 36 1 0.7942 -5.1189 -0.0532 37 1 1.1110 -5.8050 -1.7008 38 1 1.2377 -3.4306 -2.7964 39 1 2.9054 -2.7150 -2.7181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718277815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:32 Heat of formation + Delta-G solvation = 19.126694 kcal Electronic energy + Delta-G solvation = -16791.273400 eV Core-core repulsion = 14246.378127 eV Total energy + Delta-G solvation = -2544.895273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92951 -38.34761 -35.25708 -33.79409 -31.48135 -28.29372 -27.35031 -27.26665 -26.63853 -24.67081 -21.76034 -21.11439 -19.29609 -18.56296 -17.45595 -16.70344 -16.48938 -16.39965 -15.95764 -15.73984 -15.50402 -14.47377 -14.43626 -14.20982 -13.96559 -13.68166 -13.19814 -13.05930 -12.98154 -12.81681 -12.58014 -12.54973 -12.40087 -11.96344 -11.76381 -11.63874 -11.45400 -11.27557 -11.22167 -10.97268 -10.62141 -10.52677 -9.07485 -8.81093 -8.18800 -6.30173 0.92529 0.99063 1.40738 1.42384 1.53503 2.41213 3.09479 3.14561 3.26746 3.47206 3.78153 3.93996 4.01431 4.18944 4.37139 4.42653 4.51499 4.52687 4.58543 4.66521 4.67952 4.72448 4.79712 4.90024 4.92747 4.94904 5.01207 5.09526 5.16098 5.23347 5.38889 5.47788 5.60108 5.69551 5.81808 6.13661 6.37415 6.41092 6.87704 7.38980 8.93291 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043479 B = 0.003417 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.841725 B = 8191.593107 C = 8307.619240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.554 5.554 3 C 0.080 3.920 4 C 0.035 3.965 5 C -0.545 4.545 6 H 0.060 0.940 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.066 3.934 14 C -0.102 4.102 15 C -0.098 4.098 16 C -0.087 4.087 17 C -0.048 4.048 18 S -0.378 6.378 19 C -0.040 4.040 20 C -0.094 4.094 21 H 0.023 0.977 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.019 0.981 26 H -0.006 1.006 27 H -0.010 1.010 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -16.990 -14.374 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.279 5.279 3 C -0.048 4.048 4 C -0.002 4.002 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.186 1.186 13 C -0.062 4.062 14 C -0.120 4.120 15 C -0.135 4.135 16 C -0.088 4.088 17 C -0.196 4.196 18 S -0.152 6.152 19 C -0.187 4.187 20 C -0.135 4.135 21 H 0.042 0.958 22 H 0.105 0.895 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.483 -18.251 -12.808 22.346 hybrid contribution -0.358 2.014 -0.631 2.141 sum 1.124 -16.237 -13.439 21.107 Atomic orbital electron populations 1.22358 0.87682 1.02001 0.99838 1.61979 1.08160 1.13927 1.43788 1.21963 0.98606 0.87082 0.97146 1.18926 0.94970 0.93626 0.92697 1.21653 1.35296 0.99056 1.02320 0.92167 1.25972 0.95461 1.03282 0.95047 1.70117 1.42072 1.38203 1.06826 0.85434 0.79047 0.79000 0.77470 1.19744 1.20801 1.18626 1.22173 0.99833 0.93328 0.90826 1.22494 0.99703 0.92150 0.97675 1.22753 1.00023 0.93732 0.97023 1.22474 0.93435 0.93021 0.99894 1.24329 1.02583 0.93608 0.99045 1.89349 1.13748 1.58324 1.53756 1.24148 0.97363 0.93687 1.03548 1.22858 1.02316 0.93262 0.95030 0.95843 0.89529 0.93720 0.92022 0.96299 0.98793 0.99185 0.92806 0.94511 0.90967 0.89006 0.89681 0.92574 0.85563 0.88485 0.88786 0.85352 0.89006 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.15 127.69 1.17 2.12 16 2 N -0.55 -19.33 4.76 -922.46 -4.39 -23.73 16 3 C 0.08 3.36 4.90 86.30 0.42 3.79 16 4 C 0.04 1.91 4.90 29.85 0.15 2.05 16 5 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.00 0.01 5.46 84.65 0.46 0.48 16 8 N -0.93 -57.56 13.29 21.44 0.28 -57.27 16 9 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 13 C 0.07 1.67 4.78 86.30 0.41 2.08 16 14 C -0.10 -1.97 3.69 -10.20 -0.04 -2.01 16 15 C -0.10 -2.03 7.35 31.06 0.23 -1.80 16 16 C -0.09 -1.30 0.93 -52.18 -0.05 -1.35 16 17 C -0.05 -0.70 7.69 71.85 0.55 -0.15 16 18 S -0.38 -8.06 24.79 -56.49 -1.40 -9.46 16 19 C -0.04 -0.60 7.69 71.85 0.55 -0.05 16 20 C -0.09 -1.19 7.36 31.00 0.23 -0.97 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.09 2.25 6.16 -2.39 -0.01 2.24 16 23 H 0.04 1.72 6.47 -2.39 -0.02 1.70 16 24 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 25 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 26 H -0.01 -0.36 6.55 -2.39 -0.02 -0.38 16 27 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 28 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 29 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.07 1.81 7.66 -2.39 -0.02 1.80 16 31 H 0.09 1.83 6.23 -2.39 -0.01 1.81 16 32 H 0.08 1.84 7.92 -2.39 -0.02 1.83 16 33 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -67.16 321.15 1.84 -65.33 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.00 Total: 5.59 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.32 Total: -26.97 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -4.11 Total: -81.00 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.40 Total: -9.46 kcal Total: -67.16 1.84 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718277815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.453 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds