Wall clock time and date at job start Mon Mar 30 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46899 * 110.99825 * 183.95539 * 12 2 1 14 14 C 1.46899 * 111.00167 * 60.00559 * 12 2 1 15 15 C 1.52996 * 109.47221 * 189.99851 * 14 12 2 16 16 C 1.53871 * 113.59743 * 274.18705 * 15 14 12 17 17 C 1.53496 * 86.87225 * 220.38273 * 16 15 14 18 18 C 1.52594 * 120.61549 * 149.61589 * 17 16 15 19 19 S 1.81495 * 89.77029 * 93.86578 * 18 17 16 20 20 C 1.52591 * 120.50164 * 260.60082 * 17 16 15 21 21 C 1.53330 * 87.60230 * 25.08988 * 17 16 15 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47534 * 60.00147 * 13 12 2 27 27 H 1.08998 * 109.47337 * 180.02562 * 13 12 2 28 28 H 1.09007 * 109.47493 * 300.00068 * 13 12 2 29 29 H 1.09005 * 109.46935 * 309.99882 * 14 12 2 30 30 H 1.09005 * 109.47207 * 69.99057 * 14 12 2 31 31 H 1.08998 * 112.83938 * 45.33485 * 15 14 12 32 32 H 1.09004 * 113.63766 * 334.86690 * 16 15 14 33 33 H 1.08998 * 113.64021 * 105.84144 * 16 15 14 34 34 H 1.08993 * 113.16860 * 209.09381 * 18 17 16 35 35 H 1.09000 * 113.16281 * 338.64305 * 18 17 16 36 36 H 1.09004 * 113.16081 * 21.27058 * 20 17 16 37 37 H 1.09000 * 113.16592 * 150.75698 * 20 17 16 38 38 H 1.09005 * 113.63781 * 220.39924 * 21 17 16 39 39 H 1.09000 * 113.63967 * 89.42516 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1871 14 6 1.5487 -0.0265 -2.4211 15 6 1.8626 -0.9044 -3.6341 16 6 3.2796 -0.6947 -4.1961 17 6 2.6500 -0.7968 -5.5923 18 6 3.2519 -0.0411 -6.7734 19 16 4.2184 -1.5130 -7.2132 20 6 2.7181 -2.1025 -6.3790 21 6 1.3314 -0.3345 -4.9609 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9040 -0.5274 4.4375 26 1 3.8029 -1.3533 -0.3068 27 1 3.8209 -1.3110 -2.0863 28 1 3.9187 0.2050 -1.1592 29 1 0.4722 0.1324 -2.3564 30 1 2.0519 0.9345 -2.5280 31 1 1.6067 -1.9520 -3.4757 32 1 3.6962 0.2881 -3.9754 33 1 3.9665 -1.5087 -3.9648 34 1 2.5152 0.2299 -7.5295 35 1 3.8709 0.8037 -6.4713 36 1 2.8925 -2.9743 -5.7485 37 1 1.8753 -2.2394 -7.0565 38 1 0.4560 -0.8599 -5.3430 39 1 1.2066 0.7483 -4.9528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718278302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:48 Heat of formation + Delta-G solvation = 56.382059 kcal Electronic energy + Delta-G solvation = -17431.778242 eV Core-core repulsion = 14888.498484 eV Total energy + Delta-G solvation = -2543.279759 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10440 -37.01161 -33.41306 -32.11550 -30.02633 -27.51166 -26.60467 -25.84318 -24.60309 -23.67154 -20.55801 -19.38999 -18.41944 -16.77761 -16.60819 -15.67618 -15.50947 -15.05928 -14.49014 -14.17206 -13.85212 -13.29748 -13.12263 -12.75207 -12.54094 -12.34489 -12.23604 -12.05302 -11.72206 -11.42449 -11.09451 -11.08965 -10.72444 -10.53773 -10.48350 -10.33347 -10.13454 -10.01063 -9.70492 -9.44495 -8.98028 -8.56070 -7.94649 -7.32457 -6.06542 -4.04899 1.63648 1.76205 3.26052 3.35635 3.38114 3.99082 4.18919 4.39658 4.61217 4.64924 4.76191 5.01012 5.06277 5.21693 5.24656 5.31051 5.39389 5.52718 5.68639 5.69925 5.80727 5.90842 6.02535 6.06816 6.15791 6.24778 6.32700 6.42813 6.53242 6.58937 6.62238 6.81168 6.94813 7.29531 7.61044 7.97619 8.12412 8.67185 9.00361 9.55681 11.06303 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049702 B = 0.004370 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.224515 B = 6405.833043 C = 6675.186334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H -0.004 1.004 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.526 5.526 13 C 0.033 3.967 14 C 0.057 3.943 15 C -0.097 4.097 16 C -0.101 4.101 17 C -0.094 4.094 18 C -0.067 4.067 19 S -0.304 6.304 20 C -0.055 4.055 21 C -0.114 4.114 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.264 0.736 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.009 0.991 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 1.885 -19.296 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 H 0.013 0.987 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.250 5.250 13 C -0.115 4.115 14 C -0.072 4.072 15 C -0.115 4.115 16 C -0.138 4.138 17 C -0.096 4.096 18 C -0.215 4.215 19 S -0.077 6.077 20 C -0.203 4.203 21 C -0.154 4.154 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.011 0.952 -19.743 19.766 hybrid contribution -1.208 1.990 0.619 2.409 sum -1.219 2.942 -19.124 19.388 Atomic orbital electron populations 1.22212 0.98659 1.01304 0.98121 1.19683 0.91373 0.92562 0.89073 0.98698 1.21004 1.31819 1.13534 0.87934 0.89912 1.24928 0.95854 0.96590 0.95838 1.69880 1.45794 1.40320 0.97865 0.86879 0.80786 0.83867 0.76758 1.20547 1.22540 1.19526 1.61949 1.09964 1.51820 1.01225 1.22366 0.88025 0.99198 1.01943 1.22146 1.00591 0.94155 0.90263 1.22495 0.95164 1.01031 0.92855 1.22978 0.97331 1.02762 0.90774 1.22616 0.99628 0.93100 0.94219 1.24270 0.99008 0.98729 0.99514 1.88954 1.28575 1.09388 1.80799 1.24070 0.95622 1.01162 0.99456 1.22909 0.95127 1.01328 0.96039 0.95219 0.92052 0.94151 0.92654 0.90351 0.92807 0.97203 0.90787 0.95961 0.88284 0.89514 0.90443 0.87968 0.88731 0.88355 0.87751 0.90937 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.47 37.16 0.31 -2.83 16 2 C 0.18 4.23 1.65 -68.86 -0.11 4.12 16 3 H 0.00 -0.11 7.20 -51.93 -0.37 -0.48 16 4 C -0.50 -13.98 8.51 -34.44 -0.29 -14.27 16 5 H 0.08 2.49 6.64 -52.49 -0.35 2.14 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 8 Si 0.89 21.86 24.37 -169.99 -4.14 17.71 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.53 -10.47 4.62 -236.28 -1.09 -11.56 16 13 C 0.03 0.62 8.77 60.06 0.53 1.15 16 14 C 0.06 0.90 4.69 -3.83 -0.02 0.88 16 15 C -0.10 -1.19 3.50 -89.72 -0.31 -1.50 16 16 C -0.10 -1.15 5.51 -26.02 -0.14 -1.29 16 17 C -0.09 -0.89 0.93 -154.50 -0.14 -1.03 16 18 C -0.07 -0.60 7.69 36.95 0.28 -0.32 16 19 S -0.30 -3.42 24.79 -107.50 -2.66 -6.09 16 20 C -0.05 -0.51 7.69 36.95 0.28 -0.22 16 21 C -0.11 -1.07 7.35 -26.11 -0.19 -1.26 16 22 H 0.03 0.54 6.20 -51.93 -0.32 0.22 16 23 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 24 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.08 1.68 6.23 -51.93 -0.32 1.35 16 27 H 0.05 0.85 4.99 -51.93 -0.26 0.59 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 1.16 5.83 -51.93 -0.30 0.86 16 30 H 0.02 0.35 7.86 -51.93 -0.41 -0.06 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.08 0.93 7.23 -51.93 -0.38 0.56 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 303.36 15.07 4.57 4.57 Total: -1.00 -29.74 303.36 -8.74 -38.48 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.28 Total: -1.85 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.71 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.32 Total: -38.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.71 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.66 Total: -6.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.74 -8.74 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718278302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.865 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds