Wall clock time and date at job start Mon Mar 30 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46899 * 110.99825 * 183.95539 * 12 2 1 14 14 C 1.46899 * 111.00167 * 60.00559 * 12 2 1 15 15 C 1.52996 * 109.47221 * 189.99851 * 14 12 2 16 16 C 1.53871 * 113.59743 * 274.18705 * 15 14 12 17 17 C 1.53496 * 86.87225 * 220.38273 * 16 15 14 18 18 C 1.52594 * 120.61549 * 149.61589 * 17 16 15 19 19 S 1.81495 * 89.77029 * 93.86578 * 18 17 16 20 20 C 1.52591 * 120.50164 * 260.60082 * 17 16 15 21 21 C 1.53330 * 87.60230 * 25.08988 * 17 16 15 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47534 * 60.00147 * 13 12 2 27 27 H 1.08998 * 109.47337 * 180.02562 * 13 12 2 28 28 H 1.09007 * 109.47493 * 300.00068 * 13 12 2 29 29 H 1.09005 * 109.46935 * 309.99882 * 14 12 2 30 30 H 1.09005 * 109.47207 * 69.99057 * 14 12 2 31 31 H 1.08998 * 112.83938 * 45.33485 * 15 14 12 32 32 H 1.09004 * 113.63766 * 334.86690 * 16 15 14 33 33 H 1.08998 * 113.64021 * 105.84144 * 16 15 14 34 34 H 1.08993 * 113.16860 * 209.09381 * 18 17 16 35 35 H 1.09000 * 113.16281 * 338.64305 * 18 17 16 36 36 H 1.09004 * 113.16081 * 21.27058 * 20 17 16 37 37 H 1.09000 * 113.16592 * 150.75698 * 20 17 16 38 38 H 1.09005 * 113.63781 * 220.39924 * 21 17 16 39 39 H 1.09000 * 113.63967 * 89.42516 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1871 14 6 1.5487 -0.0265 -2.4211 15 6 1.8626 -0.9044 -3.6341 16 6 3.2796 -0.6947 -4.1961 17 6 2.6500 -0.7968 -5.5923 18 6 3.2519 -0.0411 -6.7734 19 16 4.2184 -1.5130 -7.2132 20 6 2.7181 -2.1025 -6.3790 21 6 1.3314 -0.3345 -4.9609 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9040 -0.5274 4.4375 26 1 3.8029 -1.3533 -0.3068 27 1 3.8209 -1.3110 -2.0863 28 1 3.9187 0.2050 -1.1592 29 1 0.4722 0.1324 -2.3564 30 1 2.0519 0.9345 -2.5280 31 1 1.6067 -1.9520 -3.4757 32 1 3.6962 0.2881 -3.9754 33 1 3.9665 -1.5087 -3.9648 34 1 2.5152 0.2299 -7.5295 35 1 3.8709 0.8037 -6.4713 36 1 2.8925 -2.9743 -5.7485 37 1 1.8753 -2.2394 -7.0565 38 1 0.4560 -0.8599 -5.3430 39 1 1.2066 0.7483 -4.9528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718278302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:47 Heat of formation + Delta-G solvation = 37.495724 kcal Electronic energy + Delta-G solvation = -17432.597215 eV Core-core repulsion = 14888.498484 eV Total energy + Delta-G solvation = -2544.098732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01649 -38.55010 -34.98209 -33.62670 -31.74156 -28.93510 -27.31407 -26.83963 -26.36613 -25.16673 -21.91373 -20.90732 -19.26356 -18.79218 -17.43991 -17.16052 -16.64650 -16.18689 -15.84797 -15.52666 -15.22169 -14.76623 -14.31804 -14.21572 -13.97252 -13.72381 -13.35903 -13.10800 -12.91482 -12.83303 -12.63200 -12.42752 -12.23986 -12.05516 -11.94339 -11.49686 -11.40941 -11.32514 -11.08659 -10.79851 -10.70900 -10.60112 -8.93030 -8.80718 -8.26469 -6.29440 0.91988 0.99254 1.30986 1.35893 1.46018 2.33157 3.07250 3.17030 3.34411 3.44926 3.75402 3.91753 4.01283 4.35399 4.43823 4.48033 4.51243 4.55496 4.60612 4.68464 4.69700 4.72907 4.75223 4.86115 4.89243 4.93448 5.01067 5.03759 5.12138 5.22580 5.28071 5.38399 5.48606 5.62922 5.69124 6.07792 6.44113 6.76706 6.80512 7.35706 8.90017 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049702 B = 0.004370 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.224515 B = 6405.833043 C = 6675.186334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.182 3.818 3 H -0.014 1.014 4 C -0.507 4.507 5 H 0.041 0.959 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.263 1.263 10 H -0.300 1.300 11 H -0.252 1.252 12 N -0.538 5.538 13 C 0.041 3.959 14 C 0.057 3.943 15 C -0.098 4.098 16 C -0.107 4.107 17 C -0.085 4.085 18 C -0.048 4.048 19 S -0.373 6.373 20 C -0.040 4.040 21 C -0.095 4.095 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.265 0.735 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.008 0.992 29 H 0.080 0.920 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 3.546 -21.706 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.074 3.926 3 H 0.003 0.997 4 C -0.545 4.545 5 H 0.059 0.941 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.777 3.223 9 H -0.189 1.189 10 H -0.228 1.228 11 H -0.176 1.176 12 N -0.262 5.262 13 C -0.107 4.107 14 C -0.070 4.070 15 C -0.117 4.117 16 C -0.144 4.144 17 C -0.087 4.087 18 C -0.196 4.196 19 S -0.147 6.147 20 C -0.188 4.188 21 C -0.135 4.135 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.027 0.973 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.081 2.611 -22.191 22.441 hybrid contribution -0.475 1.386 1.336 1.982 sum -2.555 3.996 -20.856 21.388 Atomic orbital electron populations 1.22103 0.96682 1.01462 0.99563 1.19532 0.92854 0.91439 0.88811 0.99654 1.21287 1.30739 1.12308 0.90189 0.94092 1.25793 0.97483 0.99980 0.95394 1.70041 1.47936 1.42594 0.98533 0.85839 0.79399 0.79996 0.77033 1.18937 1.22842 1.17605 1.61897 1.10165 1.52299 1.01804 1.22265 0.87981 0.98845 1.01639 1.22272 1.00761 0.94725 0.89264 1.22434 0.96336 1.00131 0.92833 1.22965 0.96706 1.02233 0.92487 1.22442 0.99370 0.93469 0.93389 1.24319 0.98573 0.97320 0.99371 1.89295 1.31076 1.12851 1.81439 1.24146 0.94672 1.00850 0.99159 1.22849 0.95402 1.02142 0.93150 0.91377 0.92625 0.94961 0.92623 0.94070 0.89827 0.97342 0.90128 0.95539 0.89146 0.89632 0.91710 0.85654 0.88449 0.88775 0.85466 0.89054 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.47 71.98 0.61 -5.12 16 2 C 0.18 8.38 1.65 44.17 0.07 8.45 16 3 H -0.01 -0.67 7.20 -2.39 -0.02 -0.68 16 4 C -0.51 -28.85 8.51 25.60 0.22 -28.64 16 5 H 0.04 2.61 6.64 -2.91 -0.02 2.59 16 6 C 0.01 0.60 5.45 84.65 0.46 1.06 16 7 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.95 44.77 24.37 68.60 1.67 46.44 16 9 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 11 H -0.25 -11.03 6.53 99.48 0.65 -10.39 16 12 N -0.54 -20.97 4.62 -901.46 -4.17 -25.14 16 13 C 0.04 1.56 8.77 127.69 1.12 2.68 16 14 C 0.06 1.64 4.69 86.30 0.40 2.05 16 15 C -0.10 -2.14 3.50 -10.21 -0.04 -2.17 16 16 C -0.11 -2.19 5.51 31.05 0.17 -2.02 16 17 C -0.09 -1.33 0.93 -52.18 -0.05 -1.38 16 18 C -0.05 -0.71 7.69 71.85 0.55 -0.16 16 19 S -0.37 -7.87 24.79 -56.49 -1.40 -9.27 16 20 C -0.04 -0.64 7.69 71.85 0.55 -0.09 16 21 C -0.10 -1.37 7.35 31.00 0.23 -1.14 16 22 H 0.07 2.23 6.20 -2.39 -0.01 2.22 16 23 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.03 1.36 3.27 -2.39 -0.01 1.35 16 25 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.04 1.85 6.23 -2.39 -0.01 1.84 16 27 H 0.08 2.64 4.99 -2.39 -0.01 2.63 16 28 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.08 2.20 5.83 -2.38 -0.01 2.19 16 30 H 0.03 0.75 7.86 -2.38 -0.02 0.73 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 1.80 7.92 -2.39 -0.02 1.78 16 33 H 0.06 1.49 7.23 -2.39 -0.02 1.47 16 34 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.10 1.27 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -66.65 303.36 1.65 -65.00 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.94 Total: 8.75 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 4.31 Total: -26.46 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.87 Total: -84.46 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.40 Total: -9.27 kcal Total: -66.65 1.65 -65.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718278302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.501 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds