Wall clock time and date at job start Mon Mar 30 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50701 * 109.47025 * 240.00501 * 2 1 3 5 5 H 1.07997 * 119.99932 * 245.59831 * 4 2 1 6 6 C 1.37879 * 120.00107 * 65.60532 * 4 2 1 7 7 N 1.31518 * 120.00013 * 196.44990 * 6 4 2 8 8 Si 1.86800 * 120.00136 * 16.45050 * 6 4 2 9 9 H 1.48498 * 109.47048 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47106 * 300.00236 * 8 6 4 11 11 H 1.48504 * 109.47002 * 60.00090 * 8 6 4 12 12 N 1.46894 * 109.47159 * 120.00515 * 2 1 3 13 13 C 1.46894 * 111.00267 * 176.04635 * 12 2 1 14 14 C 1.46905 * 111.00116 * 300.00223 * 12 2 1 15 15 C 1.52994 * 109.47232 * 169.99939 * 14 12 2 16 16 C 1.53872 * 113.59939 * 274.18788 * 15 14 12 17 17 C 1.53487 * 86.87409 * 220.38512 * 16 15 14 18 18 C 1.52588 * 120.61738 * 149.62014 * 17 16 15 19 19 S 1.81493 * 89.77477 * 93.86431 * 18 17 16 20 20 C 1.52598 * 120.50038 * 260.60332 * 17 16 15 21 21 C 1.53325 * 87.60399 * 25.08806 * 17 16 15 22 22 H 1.09004 * 109.47016 * 67.23019 * 1 2 3 23 23 H 1.09001 * 109.47341 * 187.22276 * 1 2 3 24 24 H 1.09000 * 109.47661 * 307.22918 * 1 2 3 25 25 H 0.97004 * 119.99471 * 354.87720 * 7 6 4 26 26 H 1.09004 * 109.47338 * 60.00157 * 13 12 2 27 27 H 1.09001 * 109.47582 * 179.97438 * 13 12 2 28 28 H 1.09000 * 109.47298 * 300.00024 * 13 12 2 29 29 H 1.08998 * 109.46727 * 290.00180 * 14 12 2 30 30 H 1.08997 * 109.46803 * 49.99492 * 14 12 2 31 31 H 1.09003 * 112.84151 * 45.33445 * 15 14 12 32 32 H 1.09007 * 113.63571 * 334.86889 * 16 15 14 33 33 H 1.09002 * 113.63825 * 105.83921 * 16 15 14 34 34 H 1.09007 * 113.16809 * 209.09330 * 18 17 16 35 35 H 1.09001 * 113.16217 * 338.63889 * 18 17 16 36 36 H 1.08999 * 113.16468 * 21.26338 * 20 17 16 37 37 H 1.09001 * 113.17032 * 150.75957 * 20 17 16 38 38 H 1.09005 * 113.64134 * 220.40505 * 21 17 16 39 39 H 1.09000 * 113.64036 * 89.42558 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5766 -1.6381 -1.1341 6 6 1.7971 -0.1756 -2.4795 7 7 1.9360 -0.9240 -3.5520 8 14 1.2812 1.6118 -2.6483 9 1 1.0914 1.9387 -4.0844 10 1 0.0064 1.8300 -1.9187 11 1 2.3353 2.4874 -2.0759 12 7 2.0196 -0.6926 1.1993 13 6 3.4850 -0.7946 1.1870 14 6 1.5486 -0.0266 2.4211 15 6 1.8626 -0.9046 3.6340 16 6 0.7835 -1.9623 3.9247 17 6 0.9883 -1.6409 5.4115 18 6 -0.1646 -1.7764 6.4019 19 16 0.3816 -3.4618 6.7960 20 6 1.8588 -2.5392 6.2854 21 6 1.4851 -0.2567 4.9776 22 1 -0.3633 0.3978 -0.9476 23 1 -0.3634 -1.0195 0.1292 24 1 -0.3634 0.6217 0.8182 25 1 2.2751 -1.8293 -3.4711 26 1 3.9186 0.2051 1.1592 27 1 3.8209 -1.3111 2.0862 28 1 3.8029 -1.3532 0.3066 29 1 2.0518 0.9344 2.5281 30 1 0.4722 0.1322 2.3563 31 1 2.8749 -1.3083 3.6134 32 1 -0.2045 -1.6928 3.5513 33 1 1.0792 -2.9751 3.6508 34 1 -0.0870 -1.0919 7.2467 35 1 -1.1447 -1.7436 5.9260 36 1 2.5638 -3.1416 5.7125 37 1 2.3372 -2.0054 7.1066 38 1 2.3435 0.0982 5.5481 39 1 0.6921 0.4868 4.8969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718278305.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:49 Heat of formation + Delta-G solvation = 47.090011 kcal Electronic energy + Delta-G solvation = -17413.322126 eV Core-core repulsion = 14869.639434 eV Total energy + Delta-G solvation = -2543.682692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01607 -37.00273 -33.38765 -32.18054 -29.89371 -27.21371 -26.58589 -25.78598 -24.27128 -23.81235 -20.39200 -19.17941 -18.43098 -17.42939 -16.61259 -15.60964 -15.28926 -14.92493 -14.55102 -14.18128 -13.70219 -13.26343 -13.04025 -12.99777 -12.45794 -12.23495 -12.12686 -11.78774 -11.76847 -11.35594 -11.05389 -10.94319 -10.72493 -10.59104 -10.37048 -10.20044 -10.09589 -9.94237 -9.81477 -9.60413 -8.78932 -8.24444 -7.92205 -7.30152 -6.43420 -4.02173 1.65671 1.78264 3.37205 3.41219 3.59330 4.01814 4.22334 4.48912 4.60488 4.68874 4.78942 5.07020 5.09333 5.24477 5.27683 5.33253 5.41832 5.47887 5.70095 5.75128 5.80601 5.90500 6.05293 6.11041 6.22006 6.26469 6.34773 6.44864 6.55590 6.61655 6.68621 6.87891 6.96485 7.35990 7.79329 8.04922 8.35245 8.47860 9.00630 9.65509 10.97621 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043241 B = 0.004411 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.384630 B = 6345.939306 C = 6409.305314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.187 3.813 3 H -0.012 1.012 4 C -0.587 4.587 5 H 0.064 0.936 6 C 0.029 3.971 7 N -0.909 5.909 8 Si 1.045 2.955 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.526 5.526 13 C 0.039 3.961 14 C 0.058 3.942 15 C -0.100 4.100 16 C -0.088 4.088 17 C -0.096 4.096 18 C -0.067 4.067 19 S -0.303 6.303 20 C -0.056 4.056 21 C -0.114 4.114 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.020 0.980 25 H 0.267 0.733 26 H 0.010 0.990 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 1.819 19.233 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 H 0.005 0.995 4 C -0.626 4.626 5 H 0.082 0.918 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.874 3.126 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.250 5.250 13 C -0.110 4.110 14 C -0.071 4.071 15 C -0.119 4.119 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.215 4.215 19 S -0.076 6.076 20 C -0.204 4.204 21 C -0.155 4.155 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.489 1.142 18.572 18.773 hybrid contribution 1.192 0.590 0.930 1.623 sum -1.297 1.732 19.502 19.622 Atomic orbital electron populations 1.22261 0.98291 1.00398 0.99323 1.19577 0.91771 0.91921 0.88757 0.99459 1.21982 1.40094 1.09987 0.90507 0.91829 1.25677 0.95075 1.04740 0.92143 1.70854 1.41844 1.10361 1.31275 0.84050 0.76994 0.75614 0.75957 1.21162 1.20091 1.21315 1.61992 1.09532 1.52070 1.01438 1.22218 0.88473 0.99039 1.01221 1.22147 1.00509 0.94199 0.90206 1.22511 0.99504 0.96698 0.93192 1.22727 0.99920 1.00215 0.89642 1.22652 0.93287 0.98034 0.95750 1.24268 1.03052 0.92972 1.01198 1.88949 1.10918 1.16634 1.91107 1.24069 0.97993 0.97362 1.00979 1.22923 1.00976 0.94565 0.97007 0.92527 0.92870 0.96142 0.92254 0.97165 0.93609 0.90564 0.96057 0.90816 0.89099 0.89253 0.90671 0.88023 0.88609 0.88493 0.87862 0.91216 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.42 37.16 0.31 -2.86 16 2 C 0.19 4.41 1.64 -68.87 -0.11 4.30 16 3 H -0.01 -0.29 6.82 -51.93 -0.35 -0.64 16 4 C -0.59 -16.24 8.06 -34.44 -0.28 -16.52 16 5 H 0.06 1.91 6.87 -52.49 -0.36 1.55 16 6 C 0.03 0.81 5.30 -17.82 -0.09 0.72 16 7 N -0.91 -27.74 13.70 55.43 0.76 -26.98 16 8 Si 1.04 25.05 26.26 -169.99 -4.46 20.58 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.27 -6.07 5.72 56.52 0.32 -5.75 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.53 -10.67 4.62 -236.29 -1.09 -11.76 16 13 C 0.04 0.75 9.07 60.06 0.55 1.29 16 14 C 0.06 0.93 4.59 -3.82 -0.02 0.91 16 15 C -0.10 -1.27 3.69 -89.72 -0.33 -1.60 16 16 C -0.09 -1.08 7.35 -26.02 -0.19 -1.27 16 17 C -0.10 -0.95 0.93 -154.51 -0.14 -1.09 16 18 C -0.07 -0.63 7.69 36.95 0.28 -0.34 16 19 S -0.30 -3.54 24.79 -107.50 -2.66 -6.20 16 20 C -0.06 -0.54 7.69 36.95 0.28 -0.25 16 21 C -0.11 -1.11 7.35 -26.11 -0.19 -1.30 16 22 H 0.06 1.29 4.79 -51.93 -0.25 1.05 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.38 6.59 -51.93 -0.34 0.03 16 25 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.05 0.74 6.16 -51.93 -0.32 0.42 16 28 H 0.08 1.64 6.34 -51.93 -0.33 1.32 16 29 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.07 1.18 5.72 -51.93 -0.30 0.88 16 31 H 0.09 1.19 6.23 -51.93 -0.32 0.87 16 32 H 0.09 1.13 7.92 -51.93 -0.41 0.72 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -29.66 308.62 -9.19 -38.84 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.44 Total: -1.11 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 0.06 Total: -18.02 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.33 Total: -38.75 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.46 Total: 20.58 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.66 Total: -6.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.66 -9.19 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718278305.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.933 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds