Wall clock time and date at job start Mon Mar 30 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50701 * 109.47025 * 240.00501 * 2 1 3 5 5 H 1.07997 * 119.99932 * 245.59831 * 4 2 1 6 6 C 1.37879 * 120.00107 * 65.60532 * 4 2 1 7 7 N 1.31518 * 120.00013 * 196.44990 * 6 4 2 8 8 Si 1.86800 * 120.00136 * 16.45050 * 6 4 2 9 9 H 1.48498 * 109.47048 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47106 * 300.00236 * 8 6 4 11 11 H 1.48504 * 109.47002 * 60.00090 * 8 6 4 12 12 N 1.46894 * 109.47159 * 120.00515 * 2 1 3 13 13 C 1.46894 * 111.00267 * 176.04635 * 12 2 1 14 14 C 1.46905 * 111.00116 * 300.00223 * 12 2 1 15 15 C 1.52994 * 109.47232 * 169.99939 * 14 12 2 16 16 C 1.53872 * 113.59939 * 274.18788 * 15 14 12 17 17 C 1.53487 * 86.87409 * 220.38512 * 16 15 14 18 18 C 1.52588 * 120.61738 * 149.62014 * 17 16 15 19 19 S 1.81493 * 89.77477 * 93.86431 * 18 17 16 20 20 C 1.52598 * 120.50038 * 260.60332 * 17 16 15 21 21 C 1.53325 * 87.60399 * 25.08806 * 17 16 15 22 22 H 1.09004 * 109.47016 * 67.23019 * 1 2 3 23 23 H 1.09001 * 109.47341 * 187.22276 * 1 2 3 24 24 H 1.09000 * 109.47661 * 307.22918 * 1 2 3 25 25 H 0.97004 * 119.99471 * 354.87720 * 7 6 4 26 26 H 1.09004 * 109.47338 * 60.00157 * 13 12 2 27 27 H 1.09001 * 109.47582 * 179.97438 * 13 12 2 28 28 H 1.09000 * 109.47298 * 300.00024 * 13 12 2 29 29 H 1.08998 * 109.46727 * 290.00180 * 14 12 2 30 30 H 1.08997 * 109.46803 * 49.99492 * 14 12 2 31 31 H 1.09003 * 112.84151 * 45.33445 * 15 14 12 32 32 H 1.09007 * 113.63571 * 334.86889 * 16 15 14 33 33 H 1.09002 * 113.63825 * 105.83921 * 16 15 14 34 34 H 1.09007 * 113.16809 * 209.09330 * 18 17 16 35 35 H 1.09001 * 113.16217 * 338.63889 * 18 17 16 36 36 H 1.08999 * 113.16468 * 21.26338 * 20 17 16 37 37 H 1.09001 * 113.17032 * 150.75957 * 20 17 16 38 38 H 1.09005 * 113.64134 * 220.40505 * 21 17 16 39 39 H 1.09000 * 113.64036 * 89.42558 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5766 -1.6381 -1.1341 6 6 1.7971 -0.1756 -2.4795 7 7 1.9360 -0.9240 -3.5520 8 14 1.2812 1.6118 -2.6483 9 1 1.0914 1.9387 -4.0844 10 1 0.0064 1.8300 -1.9187 11 1 2.3353 2.4874 -2.0759 12 7 2.0196 -0.6926 1.1993 13 6 3.4850 -0.7946 1.1870 14 6 1.5486 -0.0266 2.4211 15 6 1.8626 -0.9046 3.6340 16 6 0.7835 -1.9623 3.9247 17 6 0.9883 -1.6409 5.4115 18 6 -0.1646 -1.7764 6.4019 19 16 0.3816 -3.4618 6.7960 20 6 1.8588 -2.5392 6.2854 21 6 1.4851 -0.2567 4.9776 22 1 -0.3633 0.3978 -0.9476 23 1 -0.3634 -1.0195 0.1292 24 1 -0.3634 0.6217 0.8182 25 1 2.2751 -1.8293 -3.4711 26 1 3.9186 0.2051 1.1592 27 1 3.8209 -1.3111 2.0862 28 1 3.8029 -1.3532 0.3066 29 1 2.0518 0.9344 2.5281 30 1 0.4722 0.1322 2.3563 31 1 2.8749 -1.3083 3.6134 32 1 -0.2045 -1.6928 3.5513 33 1 1.0792 -2.9751 3.6508 34 1 -0.0870 -1.0919 7.2467 35 1 -1.1447 -1.7436 5.9260 36 1 2.5638 -3.1416 5.7125 37 1 2.3372 -2.0054 7.1066 38 1 2.3435 0.0982 5.5481 39 1 0.6921 0.4868 4.8969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718278305.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:49 Heat of formation + Delta-G solvation = 28.698486 kcal Electronic energy + Delta-G solvation = -17414.119642 eV Core-core repulsion = 14869.639434 eV Total energy + Delta-G solvation = -2544.480208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95098 -38.56706 -35.03640 -33.62826 -31.65301 -28.64488 -27.32691 -26.65748 -26.19541 -25.31577 -21.77546 -20.77513 -19.51796 -19.28819 -17.45559 -16.98710 -16.29538 -16.13965 -15.80087 -15.53553 -15.38549 -14.57191 -14.35941 -14.05021 -13.97423 -13.69633 -13.37298 -13.18330 -13.06100 -12.64612 -12.54202 -12.35905 -12.20632 -11.93889 -11.71570 -11.64801 -11.47479 -11.20406 -11.10202 -10.86039 -10.65969 -10.37078 -8.90839 -8.81763 -8.70750 -6.29881 0.90953 0.98256 1.45601 1.52550 1.71685 2.50383 3.09889 3.17135 3.30598 3.47728 3.78319 3.95055 4.01446 4.24675 4.41918 4.45554 4.51095 4.56887 4.61218 4.68810 4.70466 4.76961 4.82918 4.86388 4.93276 4.94050 4.95549 5.00446 5.17783 5.20969 5.23735 5.39357 5.57163 5.62008 5.91199 6.08618 6.29480 6.68467 6.79771 7.47878 8.69035 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043241 B = 0.004411 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.384630 B = 6345.939306 C = 6409.305314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.187 3.813 3 H -0.012 1.012 4 C -0.585 4.585 5 H 0.022 0.978 6 C -0.024 4.024 7 N -0.943 5.943 8 Si 1.083 2.917 9 H -0.291 1.291 10 H -0.240 1.240 11 H -0.270 1.270 12 N -0.542 5.542 13 C 0.045 3.955 14 C 0.059 3.941 15 C -0.102 4.102 16 C -0.096 4.096 17 C -0.086 4.086 18 C -0.047 4.047 19 S -0.375 6.375 20 C -0.040 4.040 21 C -0.094 4.094 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.250 0.750 26 H 0.012 0.988 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.090 0.910 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 4.394 21.966 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.078 3.922 3 H 0.005 0.995 4 C -0.623 4.623 5 H 0.041 0.959 6 C -0.222 4.222 7 N -0.580 5.580 8 Si 0.905 3.095 9 H -0.217 1.217 10 H -0.164 1.164 11 H -0.195 1.195 12 N -0.266 5.266 13 C -0.104 4.104 14 C -0.068 4.068 15 C -0.121 4.121 16 C -0.133 4.133 17 C -0.088 4.088 18 C -0.195 4.195 19 S -0.149 6.149 20 C -0.188 4.188 21 C -0.135 4.135 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.147 0.853 38 H 0.109 0.891 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.137 3.701 21.347 21.891 hybrid contribution 1.456 -0.315 0.118 1.494 sum -1.681 3.386 21.465 21.795 Atomic orbital electron populations 1.22127 0.96647 1.00590 1.00262 1.19449 0.92942 0.91301 0.88473 0.99466 1.22190 1.38786 1.08493 0.92829 0.95947 1.27121 0.94887 1.08225 0.91921 1.70992 1.44593 1.09930 1.32499 0.83599 0.78800 0.70909 0.76235 1.21733 1.16385 1.19517 1.61907 1.09957 1.52687 1.02082 1.22136 0.88239 0.98919 1.01088 1.22254 1.00563 0.94858 0.89173 1.22479 0.99291 0.96814 0.93485 1.22723 0.99604 0.99008 0.91962 1.22464 0.93790 0.98202 0.94307 1.24324 1.02796 0.90809 1.01554 1.89305 1.14248 1.19906 1.91432 1.24147 0.96739 0.96558 1.01360 1.22858 1.02001 0.94210 0.94401 0.93583 0.93887 0.92327 0.94135 0.96971 0.90377 0.94277 0.95336 0.90437 0.89478 0.89649 0.92782 0.85492 0.88404 0.88967 0.85331 0.89099 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 8.42 71.98 0.61 -5.14 16 2 C 0.19 8.59 1.64 44.17 0.07 8.66 16 3 H -0.01 -0.56 6.82 -2.39 -0.02 -0.57 16 4 C -0.58 -33.13 8.06 25.60 0.21 -32.92 16 5 H 0.02 1.42 6.87 -2.91 -0.02 1.40 16 6 C -0.02 -1.40 5.30 84.65 0.45 -0.95 16 7 N -0.94 -59.67 13.70 21.45 0.29 -59.38 16 8 Si 1.08 49.60 26.26 68.60 1.80 51.40 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.24 -9.61 5.72 99.48 0.57 -9.04 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 N -0.54 -21.38 4.62 -901.50 -4.17 -25.55 16 13 C 0.04 1.69 9.07 127.69 1.16 2.85 16 14 C 0.06 1.72 4.59 86.30 0.40 2.12 16 15 C -0.10 -2.28 3.69 -10.21 -0.04 -2.31 16 16 C -0.10 -2.17 7.35 31.05 0.23 -1.94 16 17 C -0.09 -1.42 0.93 -52.18 -0.05 -1.47 16 18 C -0.05 -0.73 7.69 71.85 0.55 -0.18 16 19 S -0.38 -8.27 24.79 -56.49 -1.40 -9.67 16 20 C -0.04 -0.66 7.69 71.85 0.55 -0.11 16 21 C -0.09 -1.39 7.35 31.00 0.23 -1.16 16 22 H 0.05 1.99 4.79 -2.39 -0.01 1.98 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.06 1.97 6.59 -2.39 -0.02 1.96 16 25 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 26 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.08 2.41 6.16 -2.39 -0.01 2.39 16 28 H 0.04 1.74 6.34 -2.39 -0.02 1.73 16 29 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.08 2.19 5.72 -2.39 -0.01 2.18 16 31 H 0.09 2.03 6.23 -2.39 -0.01 2.01 16 32 H 0.09 2.00 7.92 -2.38 -0.02 1.98 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.13 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -67.11 308.62 1.73 -65.38 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.84 Total: 10.38 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 4.36 Total: -32.56 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -3.87 Total: -84.92 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.80 Total: 51.40 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.40 Total: -9.67 kcal Total: -67.11 1.73 -65.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718278305.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.081 kcal (2) G-P(sol) polarization free energy of solvation -67.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds