Wall clock time and date at job start Mon Mar 30 2020 06:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47481 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.45983 * 299.99750 * 13 12 11 15 15 O 1.20818 * 120.00126 * 264.99773 * 14 13 12 16 16 O 1.34236 * 119.99866 * 84.99834 * 14 13 12 17 17 C 1.53036 * 109.46765 * 180.02562 * 13 12 11 18 18 C 1.53112 * 109.27987 * 180.79878 * 17 13 12 19 19 C 1.53123 * 109.15923 * 57.66005 * 18 17 13 20 20 C 1.53039 * 109.27622 * 302.33996 * 19 18 17 21 21 N 1.46849 * 109.46293 * 59.97605 * 13 12 11 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 28 28 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 29 29 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 30 30 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 31 31 H 0.96695 * 116.99714 * 179.97438 * 16 14 13 32 32 H 1.08995 * 109.50279 * 300.74849 * 17 13 12 33 33 H 1.09008 * 109.50012 * 60.85891 * 17 13 12 34 34 H 1.09007 * 109.51991 * 177.55913 * 18 17 13 35 35 H 1.08995 * 109.52807 * 297.68613 * 18 17 13 36 36 H 1.08993 * 109.50543 * 62.28012 * 19 18 17 37 37 H 1.08997 * 109.50082 * 182.40065 * 19 18 17 38 38 H 1.08998 * 109.45907 * 179.19565 * 20 19 18 39 39 H 1.08994 * 109.46247 * 299.17706 * 20 19 18 40 40 H 1.00905 * 111.00014 * 305.85722 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1500 -0.0005 13 6 1.7098 -7.4750 -0.0005 14 6 0.8440 -7.5549 1.2304 15 8 1.2491 -8.1205 2.2182 16 8 -0.3773 -6.9978 1.2293 17 6 2.7044 -8.6381 -0.0005 18 6 1.9347 -9.9615 -0.0207 19 6 1.0262 -9.9958 -1.2528 20 6 0.0801 -8.7934 -1.2165 21 7 0.8647 -7.5522 -1.1990 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 0.8541 -5.0446 0.8903 28 1 0.8535 -5.0451 -0.8897 29 1 3.1007 -6.0923 -0.8910 30 1 3.1020 -6.0922 0.8889 31 1 -0.8958 -7.0751 2.0418 32 1 3.3401 -8.5733 -0.8835 33 1 3.3212 -8.5894 0.8970 34 1 2.6394 -10.7921 -0.0645 35 1 1.3294 -10.0447 0.8819 36 1 1.6354 -9.9523 -2.1555 37 1 0.4439 -10.9172 -1.2500 38 1 -0.5584 -8.8070 -2.0998 39 1 -0.5382 -8.8448 -0.3204 40 1 0.2647 -6.7441 -1.2710 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722719759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:09 Heat of formation + Delta-G solvation = -124.720455 kcal Electronic energy + Delta-G solvation = -19717.272627 eV Core-core repulsion = 16723.386804 eV Total energy + Delta-G solvation = -2993.885824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15052 -38.13540 -36.22077 -35.32784 -33.21609 -32.05612 -31.45257 -28.47312 -25.60404 -24.29690 -23.83815 -22.33457 -20.73343 -19.98300 -19.51137 -17.97603 -17.17401 -16.18352 -16.08932 -15.75816 -14.61708 -14.44748 -14.32093 -14.09238 -13.63528 -13.54764 -13.35473 -12.63028 -12.44460 -12.22461 -11.92981 -11.73162 -11.64748 -11.43667 -11.03542 -10.90540 -10.83201 -10.67579 -10.59339 -10.42574 -10.35107 -10.29406 -9.61797 -9.21914 -8.96689 -8.68778 -8.31801 -5.96903 -3.98847 2.16568 2.95324 3.32727 3.40107 3.44511 4.00387 4.44230 4.49399 4.60330 4.75612 4.89823 5.09446 5.15800 5.35371 5.38892 5.41146 5.48165 5.54384 5.68282 5.69023 5.79462 5.89266 5.93115 6.01949 6.14046 6.18388 6.30077 6.47524 6.52420 6.74613 6.82263 6.96609 7.19216 7.21599 7.72432 7.85524 7.87802 8.04271 8.47389 9.08913 9.65131 11.14487 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039605 B = 0.004055 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.810037 B = 6903.535078 C = 6954.036198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.123 4.123 12 C -0.110 4.110 13 C 0.135 3.865 14 C 0.459 3.541 15 O -0.519 6.519 16 O -0.513 6.513 17 C -0.098 4.098 18 C -0.129 4.129 19 C -0.120 4.120 20 C 0.051 3.949 21 N -0.665 5.665 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.405 0.595 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -19.942 -1.384 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.161 4.161 12 C -0.147 4.147 13 C 0.041 3.959 14 C 0.300 3.700 15 O -0.406 6.406 16 O -0.324 6.324 17 C -0.136 4.136 18 C -0.166 4.166 19 C -0.158 4.158 20 C -0.078 4.078 21 N -0.300 5.300 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.563 -20.195 -1.869 20.342 hybrid contribution -0.720 1.144 1.354 1.914 sum 0.842 -19.051 -0.515 19.077 Atomic orbital electron populations 1.69979 1.06041 1.26378 1.51203 1.25030 0.94837 0.99225 0.95434 0.86564 0.80157 0.83910 0.77543 1.19746 1.21018 1.21077 1.21334 0.93077 0.91208 1.50108 0.92700 1.19096 0.94031 0.91411 0.97095 1.21605 0.99029 0.93775 1.00227 1.21771 0.97726 0.94665 1.01910 1.21805 0.98524 0.90634 1.03768 1.21217 0.92392 0.99245 0.83033 1.24992 0.80456 0.73483 0.91098 1.90661 1.72854 1.41060 1.36022 1.84624 1.29268 1.72984 1.45566 1.21562 0.96655 0.91811 1.03562 1.21679 0.99032 0.97543 0.98367 1.21651 0.98077 0.97108 0.98976 1.22035 0.94858 0.89933 1.01012 1.60477 1.27426 1.05688 1.36365 0.93140 0.96588 0.96840 0.93226 0.93628 0.92361 0.91766 0.89201 0.90969 0.73603 0.89467 0.90324 0.91328 0.91917 0.90753 0.91680 0.90074 0.94982 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.36 16 11 C -0.12 -2.04 4.48 -26.73 -0.12 -2.15 16 12 C -0.11 -1.50 4.45 -26.73 -0.12 -1.62 16 13 C 0.13 1.67 0.69 -132.76 -0.09 1.58 16 14 C 0.46 6.26 4.40 36.01 0.16 6.41 16 15 O -0.52 -8.20 15.80 -18.74 -0.30 -8.50 16 16 O -0.51 -6.15 10.84 -39.27 -0.43 -6.58 16 17 C -0.10 -1.09 4.53 -26.65 -0.12 -1.21 16 18 C -0.13 -1.30 5.72 -26.61 -0.15 -1.45 16 19 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 20 C 0.05 0.51 6.24 -3.83 -0.02 0.49 16 21 N -0.66 -7.73 6.17 -101.17 -0.62 -8.35 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.01 6.40 -51.93 -0.33 0.67 16 28 H 0.06 1.04 6.52 -51.93 -0.34 0.70 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.41 3.36 9.10 45.56 0.41 3.78 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.90 7.84 -51.92 -0.41 0.50 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.74 6.58 -51.93 -0.34 0.39 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.35 6.46 -51.93 -0.34 0.01 16 40 H 0.36 4.42 6.49 -39.29 -0.26 4.17 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -32.35 313.26 -8.01 -40.37 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.79 Total: 2.84 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.32 Total: -14.87 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.11 Total: -34.83 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.72 Total: -15.07 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.35 -8.01 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722719759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.351 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds