Wall clock time and date at job start Mon Mar 30 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47489 * 270.00077 * 3 2 1 5 5 H 1.48502 * 109.46955 * 30.00566 * 3 2 1 6 6 H 1.48500 * 109.47001 * 149.99943 * 3 2 1 7 7 C 1.37885 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99832 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99582 * 179.97438 * 7 2 1 10 10 C 1.53009 * 109.46725 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46698 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46846 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46394 * 64.97670 * 13 12 11 15 15 O 1.20826 * 119.99922 * 95.01979 * 14 13 12 16 16 O 1.34230 * 119.99933 * 275.02343 * 14 13 12 17 17 C 1.53030 * 109.45614 * 184.94836 * 13 12 11 18 18 C 1.53203 * 109.30370 * 179.19015 * 17 13 12 19 19 C 1.53123 * 109.11533 * 302.37368 * 18 17 13 20 20 C 1.53039 * 109.31189 * 57.63615 * 19 18 17 21 21 N 1.46846 * 109.46303 * 304.99918 * 13 12 11 22 22 H 0.96993 * 120.00303 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47081 * 60.00517 * 9 7 2 24 24 H 1.08998 * 109.47330 * 299.99671 * 9 7 2 25 25 H 1.08992 * 109.47166 * 60.00264 * 10 9 7 26 26 H 1.08998 * 109.46740 * 299.99778 * 10 9 7 27 27 H 1.08993 * 109.47221 * 59.99439 * 11 10 9 28 28 H 1.09005 * 109.46817 * 299.99639 * 11 10 9 29 29 H 1.08992 * 109.47306 * 59.99987 * 12 11 10 30 30 H 1.09000 * 109.47489 * 299.99063 * 12 11 10 31 31 H 0.96700 * 116.99616 * 179.97438 * 16 14 13 32 32 H 1.08997 * 109.50569 * 299.13684 * 17 13 12 33 33 H 1.09007 * 109.50504 * 59.20862 * 17 13 12 34 34 H 1.08994 * 109.57907 * 182.46159 * 18 17 13 35 35 H 1.08997 * 109.51203 * 62.24423 * 18 17 13 36 36 H 1.09002 * 109.50371 * 297.67165 * 19 18 17 37 37 H 1.09003 * 109.50070 * 177.59325 * 19 18 17 38 38 H 1.09000 * 109.46148 * 60.81334 * 20 19 18 39 39 H 1.09002 * 109.46208 * 180.79044 * 20 19 18 40 40 H 1.00895 * 110.99739 * 302.34845 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 6 5.5515 -2.6367 -0.0022 12 6 6.0614 -4.0792 -0.0040 13 6 7.5914 -4.0792 -0.0046 14 6 8.0941 -3.4796 1.2834 15 8 8.3821 -4.1972 2.2119 16 8 8.2219 -2.1484 1.3991 17 6 8.1011 -5.5166 -0.1309 18 6 9.6330 -5.5108 -0.1515 19 6 10.1156 -4.6359 -1.3118 20 6 9.5476 -3.2239 -1.1512 21 7 8.0803 -3.2838 -1.1381 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 3.6579 -3.1499 -0.8924 26 1 3.6585 -3.1510 0.8875 27 1 5.9148 -2.1235 0.8881 28 1 5.9149 -2.1221 -0.8919 29 1 5.6981 -4.5918 -0.8946 30 1 5.6982 -4.5941 0.8853 31 1 8.5478 -1.8106 2.2446 32 1 7.7510 -6.1028 0.7187 33 1 7.7260 -5.9559 -1.0553 34 1 10.0003 -6.5283 -0.2852 35 1 10.0082 -5.1078 0.7892 36 1 9.7728 -5.0610 -2.2552 37 1 11.2047 -4.5928 -1.3065 38 1 9.9020 -2.7943 -0.2142 39 1 9.8782 -2.6026 -1.9836 40 1 7.7252 -3.6428 -2.0116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722719764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:11 Heat of formation + Delta-G solvation = -119.457426 kcal Electronic energy + Delta-G solvation = -19759.396368 eV Core-core repulsion = 16765.738766 eV Total energy + Delta-G solvation = -2993.657602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16151 -38.36961 -36.14734 -35.38879 -33.16687 -31.91896 -31.58303 -28.86169 -25.84007 -24.49292 -23.69232 -22.22055 -20.65746 -19.92359 -19.81088 -18.08295 -16.86215 -16.56573 -15.91752 -15.54030 -15.01893 -14.61377 -14.23355 -14.16780 -13.81685 -13.60860 -12.96683 -12.77607 -12.43636 -12.36906 -12.14446 -11.92998 -11.71522 -11.45343 -11.32948 -11.13286 -10.98298 -10.80047 -10.60313 -10.48261 -10.32984 -9.80388 -9.58223 -9.37693 -9.06692 -8.55262 -8.46338 -5.97447 -3.94525 2.15829 2.98519 3.36837 3.43623 3.49522 3.84622 4.34226 4.52504 4.54516 4.60266 4.72345 4.97294 5.09031 5.19332 5.33437 5.37083 5.43281 5.47430 5.58260 5.59271 5.68886 5.76865 5.80204 5.96391 5.99102 6.15971 6.27625 6.46442 6.54823 6.67568 6.80308 6.95030 7.06558 7.10975 7.44475 7.56968 7.88930 7.92397 8.62533 9.08232 9.66058 11.16285 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.004477 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.818455 B = 6252.672399 C = 6357.325077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.104 4.104 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.128 3.872 14 C 0.502 3.498 15 O -0.523 6.523 16 O -0.493 6.493 17 C -0.139 4.139 18 C -0.127 4.127 19 C -0.162 4.162 20 C 0.051 3.949 21 N -0.658 5.658 22 H 0.262 0.738 23 H 0.013 0.987 24 H 0.011 0.989 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.951 -9.216 -2.045 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.152 4.152 12 C -0.146 4.146 13 C 0.036 3.964 14 C 0.344 3.656 15 O -0.411 6.411 16 O -0.302 6.302 17 C -0.178 4.178 18 C -0.164 4.164 19 C -0.201 4.201 20 C -0.078 4.078 21 N -0.290 5.290 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 21.649 -8.822 -1.839 23.450 hybrid contribution 0.779 0.162 0.303 0.852 sum 22.428 -8.661 -1.536 24.091 Atomic orbital electron populations 1.69925 1.06331 1.26769 1.51653 1.25051 0.94716 0.99211 0.94674 0.86760 0.80401 0.83547 0.78495 1.20320 1.21552 1.18918 1.21221 0.89831 0.94333 1.50282 0.91205 1.19554 0.96732 0.92618 0.96155 1.21480 0.92401 0.99646 1.00634 1.21659 0.96866 0.93634 1.03072 1.21765 0.89037 1.00519 1.03299 1.20907 0.97486 0.90851 0.87193 1.23157 0.72686 0.80296 0.89454 1.90694 1.47092 1.62173 1.41179 1.84736 1.78486 1.24108 1.42896 1.22194 0.96339 0.95572 1.03693 1.21667 0.95308 1.00393 0.99042 1.22337 1.01380 0.97527 0.98846 1.22140 0.87315 0.95230 1.03121 1.60563 1.08467 1.54692 1.05235 0.92869 0.96825 0.97044 0.93040 0.93337 0.92341 0.90655 0.90233 0.91026 0.74128 0.89970 0.90286 0.91472 0.91422 0.91628 0.91385 0.90951 0.89901 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.08 5.15 -26.72 -0.14 -2.22 16 11 C -0.11 -1.85 4.72 -26.73 -0.13 -1.98 16 12 C -0.11 -1.40 4.37 -26.73 -0.12 -1.51 16 13 C 0.13 1.47 0.60 -132.76 -0.08 1.39 16 14 C 0.50 6.56 4.56 36.01 0.16 6.72 16 15 O -0.52 -7.88 15.80 -18.75 -0.30 -8.18 16 16 O -0.49 -5.84 11.13 -39.26 -0.44 -6.28 16 17 C -0.14 -1.37 4.52 -26.61 -0.12 -1.49 16 18 C -0.13 -1.16 5.73 -26.56 -0.15 -1.31 16 19 C -0.16 -1.26 6.07 -26.65 -0.16 -1.42 16 20 C 0.05 0.46 6.25 -3.83 -0.02 0.44 16 21 N -0.66 -6.82 5.10 -101.16 -0.52 -7.34 16 22 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.00 6.53 -51.93 -0.34 0.66 16 28 H 0.07 1.22 7.47 -51.93 -0.39 0.83 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.40 3.11 9.10 45.56 0.41 3.53 16 32 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.73 6.46 -51.93 -0.34 0.39 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.35 3.17 8.79 -39.29 -0.35 2.82 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -33.69 312.49 -7.63 -41.32 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.90 Total: 1.52 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.30 Total: -15.56 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.26 Total: -35.18 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.73 Total: -14.46 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.69 -7.63 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722719764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.138 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds