Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47489 * 270.00077 * 3 2 1 5 5 H 1.48502 * 109.46955 * 30.00566 * 3 2 1 6 6 H 1.48500 * 109.47001 * 149.99943 * 3 2 1 7 7 C 1.37885 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99832 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99582 * 179.97438 * 7 2 1 10 10 C 1.53009 * 109.46725 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46698 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46846 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46394 * 64.97670 * 13 12 11 15 15 O 1.20826 * 119.99922 * 95.01979 * 14 13 12 16 16 O 1.34230 * 119.99933 * 275.02343 * 14 13 12 17 17 C 1.53030 * 109.45614 * 184.94836 * 13 12 11 18 18 C 1.53203 * 109.30370 * 179.19015 * 17 13 12 19 19 C 1.53123 * 109.11533 * 302.37368 * 18 17 13 20 20 C 1.53039 * 109.31189 * 57.63615 * 19 18 17 21 21 N 1.46846 * 109.46303 * 304.99918 * 13 12 11 22 22 H 0.96993 * 120.00303 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47081 * 60.00517 * 9 7 2 24 24 H 1.08998 * 109.47330 * 299.99671 * 9 7 2 25 25 H 1.08992 * 109.47166 * 60.00264 * 10 9 7 26 26 H 1.08998 * 109.46740 * 299.99778 * 10 9 7 27 27 H 1.08993 * 109.47221 * 59.99439 * 11 10 9 28 28 H 1.09005 * 109.46817 * 299.99639 * 11 10 9 29 29 H 1.08992 * 109.47306 * 59.99987 * 12 11 10 30 30 H 1.09000 * 109.47489 * 299.99063 * 12 11 10 31 31 H 0.96700 * 116.99616 * 179.97438 * 16 14 13 32 32 H 1.08997 * 109.50569 * 299.13684 * 17 13 12 33 33 H 1.09007 * 109.50504 * 59.20862 * 17 13 12 34 34 H 1.08994 * 109.57907 * 182.46159 * 18 17 13 35 35 H 1.08997 * 109.51203 * 62.24423 * 18 17 13 36 36 H 1.09002 * 109.50371 * 297.67165 * 19 18 17 37 37 H 1.09003 * 109.50070 * 177.59325 * 19 18 17 38 38 H 1.09000 * 109.46148 * 60.81334 * 20 19 18 39 39 H 1.09002 * 109.46208 * 180.79044 * 20 19 18 40 40 H 1.00895 * 110.99739 * 302.34845 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 6 5.5515 -2.6367 -0.0022 12 6 6.0614 -4.0792 -0.0040 13 6 7.5914 -4.0792 -0.0046 14 6 8.0941 -3.4796 1.2834 15 8 8.3821 -4.1972 2.2119 16 8 8.2219 -2.1484 1.3991 17 6 8.1011 -5.5166 -0.1309 18 6 9.6330 -5.5108 -0.1515 19 6 10.1156 -4.6359 -1.3118 20 6 9.5476 -3.2239 -1.1512 21 7 8.0803 -3.2838 -1.1381 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 3.6579 -3.1499 -0.8924 26 1 3.6585 -3.1510 0.8875 27 1 5.9148 -2.1235 0.8881 28 1 5.9149 -2.1221 -0.8919 29 1 5.6981 -4.5918 -0.8946 30 1 5.6982 -4.5941 0.8853 31 1 8.5478 -1.8106 2.2446 32 1 7.7510 -6.1028 0.7187 33 1 7.7260 -5.9559 -1.0553 34 1 10.0003 -6.5283 -0.2852 35 1 10.0082 -5.1078 0.7892 36 1 9.7728 -5.0610 -2.2552 37 1 11.2047 -4.5928 -1.3065 38 1 9.9020 -2.7943 -0.2142 39 1 9.8782 -2.6026 -1.9836 40 1 7.7252 -3.6428 -2.0116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722719764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = -142.867533 kcal Electronic energy + Delta-G solvation = -19760.411506 eV Core-core repulsion = 16765.738766 eV Total energy + Delta-G solvation = -2994.672740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.08495 -39.24110 -37.15917 -36.80087 -34.90865 -33.27060 -32.59713 -30.33634 -27.16333 -25.71734 -24.49760 -23.52533 -21.86603 -21.42979 -20.70861 -19.06361 -18.80701 -17.77781 -16.84276 -16.48546 -16.27938 -15.93719 -15.71130 -15.01086 -14.81768 -14.76122 -14.48616 -14.08035 -13.84219 -13.55858 -13.21600 -13.12796 -12.86504 -12.76736 -12.57860 -12.24338 -12.13409 -12.03648 -11.77811 -11.69862 -11.49514 -11.43466 -11.29316 -11.20938 -10.98746 -10.73540 -9.31614 -8.27452 -6.31065 1.16824 1.37626 1.39540 1.52543 2.13233 2.38895 3.06718 3.08152 3.46477 3.77807 3.90385 4.06165 4.16993 4.20578 4.29638 4.38677 4.46651 4.61802 4.70619 4.76562 4.83950 4.89917 4.90907 4.99780 5.03452 5.08269 5.12090 5.25414 5.27838 5.32637 5.40730 5.58216 5.68157 5.71805 5.75076 5.92767 6.32385 6.43591 6.77373 7.03089 7.33860 8.89620 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.004477 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.818455 B = 6252.672399 C = 6357.325077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.030 0.970 9 C -0.011 4.011 10 C -0.098 4.098 11 C -0.101 4.101 12 C -0.104 4.104 13 C 0.132 3.868 14 C 0.500 3.500 15 O -0.550 6.550 16 O -0.497 6.497 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.154 4.154 20 C 0.052 3.948 21 N -0.665 5.665 22 H 0.266 0.734 23 H 0.012 0.988 24 H 0.020 0.980 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.416 0.584 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.208 -8.791 -3.209 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.136 4.136 11 C -0.138 4.138 12 C -0.142 4.142 13 C 0.040 3.960 14 C 0.343 3.657 15 O -0.440 6.440 16 O -0.308 6.308 17 C -0.176 4.176 18 C -0.163 4.163 19 C -0.193 4.193 20 C -0.078 4.078 21 N -0.299 5.299 22 H 0.074 0.926 23 H 0.031 0.969 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.276 0.724 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 23.924 -8.401 -3.006 25.533 hybrid contribution 0.011 -0.005 0.691 0.691 sum 23.935 -8.406 -2.315 25.473 Atomic orbital electron populations 1.70078 1.08340 1.28125 1.52977 1.26060 0.95627 1.03643 0.94135 0.85619 0.79371 0.78070 0.79364 1.18832 1.21016 1.17225 1.21598 0.92493 0.93008 1.50086 0.95191 1.19526 0.93454 0.95665 0.96215 1.21381 0.95303 0.96637 1.00261 1.21461 0.93588 0.95927 1.02830 1.21678 0.90242 0.98260 1.03982 1.20829 0.96242 0.91904 0.87070 1.23540 0.72059 0.80391 0.89713 1.90681 1.48365 1.62749 1.42217 1.84700 1.78293 1.23657 1.44198 1.22193 0.96911 0.94302 1.04158 1.21651 0.94717 1.01295 0.98641 1.22277 1.01927 0.96364 0.98723 1.22163 0.86459 0.96199 1.02935 1.60529 1.09477 1.54610 1.05247 0.92551 0.96940 0.96207 0.92888 0.94361 0.93256 0.90143 0.88271 0.91764 0.72364 0.91333 0.88176 0.90310 0.93670 0.90138 0.90412 0.92429 0.88498 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.00 0.09 5.47 84.66 0.46 0.56 16 3 Si 0.95 45.48 27.47 68.60 1.88 47.36 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 7 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.10 -3.86 5.15 30.60 0.16 -3.71 16 11 C -0.10 -3.08 4.72 30.59 0.14 -2.93 16 12 C -0.10 -2.49 4.37 30.59 0.13 -2.36 16 13 C 0.13 2.79 0.60 2.80 0.00 2.79 16 14 C 0.50 12.57 4.56 71.24 0.32 12.89 16 15 O -0.55 -16.43 15.80 21.97 0.35 -16.08 16 16 O -0.50 -11.19 11.13 -51.42 -0.57 -11.76 16 17 C -0.14 -2.43 4.52 30.67 0.14 -2.29 16 18 C -0.13 -2.06 5.73 30.70 0.18 -1.88 16 19 C -0.15 -1.95 6.07 30.65 0.19 -1.76 16 20 C 0.05 0.79 6.25 86.32 0.54 1.33 16 21 N -0.67 -12.06 5.10 -473.97 -2.42 -14.48 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 24 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.60 6.53 -2.39 -0.02 1.59 16 28 H 0.08 2.40 7.47 -2.38 -0.02 2.38 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.42 6.06 9.10 -74.06 -0.67 5.39 16 32 H 0.07 1.41 7.84 -2.39 -0.02 1.40 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.95 6.58 -2.39 -0.02 0.94 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 1.06 6.46 -2.39 -0.02 1.05 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.36 5.30 8.79 -89.70 -0.79 4.51 16 Total: -1.00 -73.12 312.49 1.69 -71.43 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.49 Total: 13.90 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 2.63 Total: -29.38 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -2.12 Total: -75.47 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.23 Total: -27.84 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -73.12 1.69 -71.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722719764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.434 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds