Wall clock time and date at job start Mon Mar 30 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47254 * 239.99732 * 3 2 1 5 5 H 1.48501 * 109.47470 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47294 * 120.00079 * 3 2 1 7 7 C 1.37874 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99666 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47010 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.50698 * 108.77937 * 288.79156 * 12 11 10 14 14 O 1.20827 * 119.99860 * 263.39314 * 13 12 11 15 15 O 1.34227 * 120.00188 * 83.39858 * 13 12 11 16 16 C 1.50440 * 108.81308 * 170.48828 * 12 11 10 17 17 C 1.54303 * 108.49944 * 332.86772 * 16 12 11 18 18 C 1.45875 * 112.18841 * 281.46198 * 17 16 12 19 19 C 1.54308 * 112.18512 * 61.11417 * 18 17 16 20 20 C 1.50440 * 108.50633 * 281.47188 * 19 18 17 21 21 N 1.47993 * 112.83230 * 93.72310 * 20 19 18 22 22 H 0.97008 * 120.00072 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47640 * 59.99677 * 9 7 2 24 24 H 1.09003 * 109.47358 * 299.99534 * 9 7 2 25 25 H 1.08997 * 109.46835 * 60.00131 * 10 9 7 26 26 H 1.08996 * 109.46823 * 299.99409 * 10 9 7 27 27 H 1.09006 * 109.47175 * 59.99618 * 11 10 9 28 28 H 1.09005 * 109.47005 * 300.00274 * 11 10 9 29 29 H 0.96706 * 116.99902 * 179.97438 * 15 13 12 30 30 H 1.09003 * 109.62716 * 92.57127 * 16 12 11 31 31 H 1.08996 * 109.63143 * 213.15978 * 16 12 11 32 32 H 1.09000 * 108.93811 * 42.15763 * 17 16 12 33 33 H 1.09002 * 108.93960 * 160.75917 * 17 16 12 34 34 H 1.08997 * 108.94342 * 181.81962 * 18 17 16 35 35 H 1.09007 * 108.93561 * 300.42793 * 18 17 16 36 36 H 1.09010 * 109.62966 * 41.17268 * 19 18 17 37 37 H 1.09001 * 109.63159 * 161.75985 * 19 18 17 38 38 H 1.09002 * 108.81014 * 332.85959 * 20 19 18 39 39 H 1.09002 * 108.81281 * 214.59454 * 20 19 18 40 40 H 1.00899 * 111.00923 * 191.34754 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4744 -6.1500 0.0005 13 6 3.1380 -6.2202 -1.3506 14 8 2.7204 -6.9826 -2.1899 15 8 4.1930 -5.4360 -1.6218 16 6 1.7223 -7.4314 0.2365 17 6 0.4460 -7.1088 1.0415 18 6 0.7237 -6.9168 2.4607 19 6 1.6867 -5.7376 2.7117 20 6 3.0889 -6.1945 2.4144 21 7 3.5089 -5.8940 1.0276 22 1 -0.4851 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8532 -5.0451 -0.8886 28 1 0.8538 -5.0445 0.8914 29 1 4.5854 -5.5168 -2.5020 30 1 1.4491 -7.8770 -0.7200 31 1 2.3464 -8.1237 0.8014 32 1 -0.0033 -6.1993 0.6428 33 1 -0.2614 -7.9302 0.9274 34 1 -0.2142 -6.7249 2.9819 35 1 1.1686 -7.8281 2.8605 36 1 1.4260 -4.9061 2.0567 37 1 1.6169 -5.4230 3.7530 38 1 3.1490 -7.2711 2.5744 39 1 3.7732 -5.7003 3.1040 40 1 4.3699 -6.3683 0.7996 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722759296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:51 Heat of formation + Delta-G solvation = -79.105700 kcal Electronic energy + Delta-G solvation = -20467.202733 eV Core-core repulsion = 17475.294913 eV Total energy + Delta-G solvation = -2991.907820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12440 -38.96857 -36.01529 -34.26050 -33.39172 -32.64244 -31.33018 -27.70746 -25.91259 -25.34694 -23.30556 -22.19091 -20.49384 -20.02121 -18.56326 -17.94420 -17.31141 -16.17499 -15.72584 -15.39934 -14.90442 -14.65762 -14.35867 -13.86781 -13.59362 -13.33598 -13.03894 -12.49037 -12.30448 -12.18179 -11.69394 -11.56670 -11.43679 -11.29721 -10.90511 -10.81280 -10.70938 -10.50351 -10.46061 -10.38725 -10.12898 -9.68373 -9.24524 -9.08260 -8.94704 -8.27123 -8.17088 -5.90732 -3.91575 2.28923 3.15519 3.39157 3.42946 3.46142 4.01191 4.53495 4.69513 4.74735 4.90052 5.12998 5.18992 5.32004 5.37240 5.44958 5.59623 5.64915 5.74138 5.81009 5.93130 6.01490 6.07876 6.11049 6.17844 6.23494 6.32920 6.48524 6.60836 6.72116 6.95640 7.06277 7.17171 7.35254 7.44231 7.82281 7.97775 8.06906 8.12541 8.56528 9.16112 9.71749 11.20743 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.006195 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.023165 B = 4518.492538 C = 5037.508994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.102 4.102 11 C -0.134 4.134 12 C 0.141 3.859 13 C 0.490 3.510 14 O -0.525 6.525 15 O -0.492 6.492 16 C -0.142 4.142 17 C -0.136 4.136 18 C -0.119 4.119 19 C -0.158 4.158 20 C 0.074 3.926 21 N -0.673 5.673 22 H 0.259 0.741 23 H 0.009 0.991 24 H 0.012 0.988 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.402 0.598 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.981 -15.664 3.291 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.139 4.139 11 C -0.171 4.171 12 C 0.050 3.950 13 C 0.332 3.668 14 O -0.414 6.414 15 O -0.301 6.301 16 C -0.181 4.181 17 C -0.173 4.173 18 C -0.156 4.156 19 C -0.195 4.195 20 C -0.054 4.054 21 N -0.306 5.306 22 H 0.069 0.931 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.259 0.741 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.362 -15.086 3.520 16.094 hybrid contribution 0.772 -0.121 -0.701 1.050 sum 5.134 -15.207 2.818 16.296 Atomic orbital electron populations 1.69963 1.06015 1.26455 1.51443 1.25025 0.94813 0.99126 0.95630 0.86698 0.79583 0.83360 0.78575 1.20358 1.21444 1.20284 1.21253 0.93068 0.91084 1.49699 0.92704 1.19132 0.94133 0.91908 0.96607 1.21601 0.98523 0.91782 1.02041 1.22662 0.96871 0.94194 1.03333 1.20536 0.92207 0.97417 0.84890 1.23575 0.77217 0.75446 0.90543 1.90669 1.63069 1.38538 1.49112 1.84713 1.44243 1.60991 1.40154 1.22038 0.97513 0.96223 1.02292 1.20820 0.97174 1.03426 0.95861 1.20597 1.00025 0.98356 0.96662 1.22069 0.93987 1.00220 1.03232 1.21559 0.97415 0.97758 0.88625 1.60125 1.04921 1.64857 1.00745 0.93146 0.97285 0.96989 0.91238 0.93314 0.92212 0.87435 0.74054 0.89197 0.91757 0.89219 0.92136 0.91899 0.92796 0.86826 0.91093 0.95629 0.90702 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.12 4.29 -26.73 -0.11 -2.23 16 11 C -0.13 -2.27 2.34 -26.73 -0.06 -2.33 16 12 C 0.14 2.01 0.65 -133.42 -0.09 1.93 16 13 C 0.49 7.40 6.44 36.00 0.23 7.64 16 14 O -0.53 -8.90 16.10 -18.75 -0.30 -9.20 16 15 O -0.49 -6.61 11.74 -39.25 -0.46 -7.07 16 16 C -0.14 -1.79 4.96 -27.33 -0.14 -1.92 16 17 C -0.14 -1.61 5.17 -29.42 -0.15 -1.76 16 18 C -0.12 -1.31 5.24 -29.42 -0.15 -1.46 16 19 C -0.16 -1.96 5.58 -27.32 -0.15 -2.11 16 20 C 0.07 0.87 6.01 -4.50 -0.03 0.84 16 21 N -0.67 -8.84 4.78 -102.27 -0.49 -9.33 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 1.46 7.10 -51.93 -0.37 1.09 16 26 H 0.05 1.05 6.61 -51.93 -0.34 0.71 16 27 H 0.06 1.06 8.05 -51.93 -0.42 0.65 16 28 H 0.11 1.74 2.67 -51.93 -0.14 1.60 16 29 H 0.40 3.61 9.10 45.56 0.41 4.02 16 30 H 0.09 1.24 6.53 -51.93 -0.34 0.90 16 31 H 0.06 0.74 7.08 -51.93 -0.37 0.37 16 32 H 0.09 1.19 4.95 -51.93 -0.26 0.93 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.54 7.52 -51.92 -0.39 0.15 16 36 H 0.11 1.74 3.74 -51.92 -0.19 1.54 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.26 6.59 -51.93 -0.34 -0.08 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.34 4.00 8.39 -39.29 -0.33 3.67 16 LS Contribution 300.22 15.07 4.52 4.52 Total: -1.00 -32.58 300.22 -7.37 -39.95 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.15 Total: 5.42 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.20 Total: -14.66 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.25 Total: -36.00 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.76 Total: -16.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.58 -7.37 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722759296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.154 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds