Wall clock time and date at job start Mon Mar 30 2020 06:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47254 * 239.99732 * 3 2 1 5 5 H 1.48501 * 109.47470 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47294 * 120.00079 * 3 2 1 7 7 C 1.37874 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99666 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47010 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.50698 * 108.77937 * 288.79156 * 12 11 10 14 14 O 1.20827 * 119.99860 * 263.39314 * 13 12 11 15 15 O 1.34227 * 120.00188 * 83.39858 * 13 12 11 16 16 C 1.50440 * 108.81308 * 170.48828 * 12 11 10 17 17 C 1.54303 * 108.49944 * 332.86772 * 16 12 11 18 18 C 1.45875 * 112.18841 * 281.46198 * 17 16 12 19 19 C 1.54308 * 112.18512 * 61.11417 * 18 17 16 20 20 C 1.50440 * 108.50633 * 281.47188 * 19 18 17 21 21 N 1.47993 * 112.83230 * 93.72310 * 20 19 18 22 22 H 0.97008 * 120.00072 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47640 * 59.99677 * 9 7 2 24 24 H 1.09003 * 109.47358 * 299.99534 * 9 7 2 25 25 H 1.08997 * 109.46835 * 60.00131 * 10 9 7 26 26 H 1.08996 * 109.46823 * 299.99409 * 10 9 7 27 27 H 1.09006 * 109.47175 * 59.99618 * 11 10 9 28 28 H 1.09005 * 109.47005 * 300.00274 * 11 10 9 29 29 H 0.96706 * 116.99902 * 179.97438 * 15 13 12 30 30 H 1.09003 * 109.62716 * 92.57127 * 16 12 11 31 31 H 1.08996 * 109.63143 * 213.15978 * 16 12 11 32 32 H 1.09000 * 108.93811 * 42.15763 * 17 16 12 33 33 H 1.09002 * 108.93960 * 160.75917 * 17 16 12 34 34 H 1.08997 * 108.94342 * 181.81962 * 18 17 16 35 35 H 1.09007 * 108.93561 * 300.42793 * 18 17 16 36 36 H 1.09010 * 109.62966 * 41.17268 * 19 18 17 37 37 H 1.09001 * 109.63159 * 161.75985 * 19 18 17 38 38 H 1.09002 * 108.81014 * 332.85959 * 20 19 18 39 39 H 1.09002 * 108.81281 * 214.59454 * 20 19 18 40 40 H 1.00899 * 111.00923 * 191.34754 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4744 -6.1500 0.0005 13 6 3.1380 -6.2202 -1.3506 14 8 2.7204 -6.9826 -2.1899 15 8 4.1930 -5.4360 -1.6218 16 6 1.7223 -7.4314 0.2365 17 6 0.4460 -7.1088 1.0415 18 6 0.7237 -6.9168 2.4607 19 6 1.6867 -5.7376 2.7117 20 6 3.0889 -6.1945 2.4144 21 7 3.5089 -5.8940 1.0276 22 1 -0.4851 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8532 -5.0451 -0.8886 28 1 0.8538 -5.0445 0.8914 29 1 4.5854 -5.5168 -2.5020 30 1 1.4491 -7.8770 -0.7200 31 1 2.3464 -8.1237 0.8014 32 1 -0.0033 -6.1993 0.6428 33 1 -0.2614 -7.9302 0.9274 34 1 -0.2142 -6.7249 2.9819 35 1 1.1686 -7.8281 2.8605 36 1 1.4260 -4.9061 2.0567 37 1 1.6169 -5.4230 3.7530 38 1 3.1490 -7.2711 2.5744 39 1 3.7732 -5.7003 3.1040 40 1 4.3699 -6.3683 0.7996 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722759296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:50 Heat of formation + Delta-G solvation = -101.254112 kcal Electronic energy + Delta-G solvation = -20468.163160 eV Core-core repulsion = 17475.294913 eV Total energy + Delta-G solvation = -2992.868247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.26723 -40.07749 -37.17933 -36.00681 -34.64689 -33.98733 -32.95479 -29.39498 -27.07258 -26.55086 -25.08917 -23.25010 -22.13440 -21.20799 -19.73631 -19.10496 -18.49337 -18.27338 -16.96432 -16.52050 -16.44076 -15.94625 -15.70859 -15.25975 -14.80924 -14.36611 -14.26968 -14.12467 -13.76872 -13.40964 -13.16108 -13.10110 -12.75067 -12.64820 -12.56824 -12.38084 -12.25789 -11.83683 -11.76080 -11.47228 -11.42197 -11.21797 -11.11547 -10.94099 -10.52250 -10.43735 -9.21920 -8.15050 -6.25053 1.09611 1.41184 1.44473 1.52277 2.09270 2.44403 2.98831 3.17592 3.63735 3.74037 3.94673 4.12547 4.16143 4.27400 4.33884 4.47651 4.57875 4.72190 4.74476 4.80664 4.82227 5.02771 5.11495 5.14078 5.19958 5.25203 5.27885 5.34554 5.40487 5.42086 5.54995 5.60153 5.71554 5.90245 6.01403 6.04870 6.34588 6.47242 6.92082 7.01025 7.43525 8.96509 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.006195 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.023165 B = 4518.492538 C = 5037.508994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.080 4.080 11 C -0.127 4.127 12 C 0.149 3.851 13 C 0.489 3.511 14 O -0.547 6.547 15 O -0.494 6.494 16 C -0.135 4.135 17 C -0.134 4.134 18 C -0.115 4.115 19 C -0.160 4.160 20 C 0.074 3.926 21 N -0.683 5.683 22 H 0.262 0.738 23 H -0.021 1.021 24 H -0.008 1.008 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.421 0.579 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -16.352 4.228 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.118 4.118 11 C -0.164 4.164 12 C 0.057 3.943 13 C 0.332 3.668 14 O -0.437 6.437 15 O -0.306 6.306 16 C -0.174 4.174 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.197 4.197 20 C -0.054 4.054 21 N -0.319 5.319 22 H 0.071 0.929 23 H -0.003 1.003 24 H 0.010 0.990 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.281 0.719 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.740 -15.782 4.451 17.373 hybrid contribution 0.346 0.114 -1.006 1.070 sum 6.086 -15.668 3.445 17.158 Atomic orbital electron populations 1.70100 1.07740 1.27614 1.52110 1.25965 0.95747 1.03225 0.94959 0.85555 0.78322 0.78330 0.79174 1.19408 1.20863 1.19038 1.21680 0.93452 0.92476 1.49869 0.92445 1.19047 0.94491 0.93644 0.94099 1.21292 0.97178 0.91878 1.01434 1.22570 0.97198 0.93411 1.03218 1.20376 0.91909 0.96833 0.85158 1.23739 0.77281 0.75134 0.90599 1.90660 1.63767 1.39523 1.49776 1.84667 1.43741 1.60374 1.41779 1.21985 0.97864 0.95439 1.02140 1.20797 0.97042 1.03022 0.96277 1.20569 1.00145 0.98497 0.96022 1.22041 0.95010 0.99693 1.02985 1.21619 0.96908 0.99187 0.87650 1.60057 1.05046 1.65570 1.01188 0.92929 1.00293 0.98968 0.91212 0.94194 0.93832 0.86407 0.71880 0.90349 0.89834 0.91362 0.90506 0.91332 0.90785 0.90128 0.90202 0.93393 0.90087 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.08 -3.41 4.29 30.60 0.13 -3.28 16 11 C -0.13 -4.39 2.34 30.59 0.07 -4.31 16 12 C 0.15 4.12 0.65 1.74 0.00 4.12 16 13 C 0.49 14.44 6.44 71.24 0.46 14.90 16 14 O -0.55 -18.26 16.10 21.96 0.35 -17.91 16 15 O -0.49 -12.80 11.74 -51.39 -0.60 -13.40 16 16 C -0.14 -3.19 4.96 30.21 0.15 -3.04 16 17 C -0.13 -2.98 5.17 28.85 0.15 -2.83 16 18 C -0.12 -2.26 5.24 28.85 0.15 -2.11 16 19 C -0.16 -3.72 5.58 30.21 0.17 -3.55 16 20 C 0.07 1.54 6.01 85.26 0.51 2.05 16 21 N -0.68 -16.79 4.78 -477.47 -2.28 -19.07 16 22 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 23 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.07 2.95 7.10 -2.39 -0.02 2.93 16 26 H 0.04 1.74 6.61 -2.39 -0.02 1.72 16 27 H 0.04 1.61 8.05 -2.38 -0.02 1.60 16 28 H 0.12 3.90 2.67 -2.38 -0.01 3.89 16 29 H 0.42 7.06 9.10 -74.05 -0.67 6.39 16 30 H 0.08 2.07 6.53 -2.39 -0.02 2.05 16 31 H 0.08 1.66 7.08 -2.39 -0.02 1.65 16 32 H 0.07 1.81 4.95 -2.39 -0.01 1.79 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.20 7.52 -2.38 -0.02 1.18 16 36 H 0.08 2.45 3.74 -2.38 -0.01 2.44 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 0.81 6.59 -2.39 -0.02 0.79 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.35 7.46 8.39 -89.69 -0.75 6.70 16 Total: -1.00 -70.33 300.22 2.06 -68.27 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.36 Total: 20.10 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 2.64 Total: -27.46 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.00 Total: -76.86 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.25 Total: -31.30 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.33 2.06 -68.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722759296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.980 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds